JP2019530878A - 重篤患者における死亡率の予後診断に使用するためのバイオマーカー - Google Patents

重篤患者における死亡率の予後診断に使用するためのバイオマーカー Download PDF

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JP2019530878A
JP2019530878A JP2019519961A JP2019519961A JP2019530878A JP 2019530878 A JP2019530878 A JP 2019530878A JP 2019519961 A JP2019519961 A JP 2019519961A JP 2019519961 A JP2019519961 A JP 2019519961A JP 2019530878 A JP2019530878 A JP 2019530878A
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patient
polynucleotide
biomarker
sepsis
mortality
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JP2019530878A5 (https=
Inventor
カトリ パーベシュ
カトリ パーベシュ
イー.スウィニー ティモシー
イー.スウィニー ティモシー
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Leland Stanford Junior University
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Leland Stanford Junior University
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    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6883Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • A61P31/04Antibacterial agents
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P37/00Drugs for immunological or allergic disorders
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    • CCHEMISTRY; METALLURGY
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    • C40B40/04Libraries containing only organic compounds
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    • C40B40/08Libraries containing RNA or DNA which encodes proteins, e.g. gene libraries
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    • G01N33/00Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48Biological material, e.g. blood, urine; Haemocytometers
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    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/68Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids
    • G01N33/6893Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids related to diseases not provided for elsewhere
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G16B25/10Gene or protein expression profiling; Expression-ratio estimation or normalisation
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G16B25/20Polymerase chain reaction [PCR]; Primer or probe design; Probe optimisation
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    • C12Q2537/00Reactions characterised by the reaction format or use of a specific feature
    • C12Q2537/10Reactions characterised by the reaction format or use of a specific feature the purpose or use of
    • C12Q2537/165Mathematical modelling, e.g. logarithm, ratio
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    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/118Prognosis of disease development
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    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/158Expression markers
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2800/00Detection or diagnosis of diseases
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    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2800/00Detection or diagnosis of diseases
    • G01N2800/26Infectious diseases, e.g. generalised sepsis

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JP2019519961A 2016-06-26 2017-04-25 重篤患者における死亡率の予後診断に使用するためのバイオマーカー Pending JP2019530878A (ja)

Priority Applications (1)

Application Number Priority Date Filing Date Title
JP2022110659A JP2022153436A (ja) 2016-06-26 2022-07-08 重篤患者における死亡率の予後診断に使用するためのバイオマーカー

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US201662354789P 2016-06-26 2016-06-26
US62/354,789 2016-06-26
PCT/US2017/029468 WO2018004806A1 (en) 2016-06-26 2017-04-25 Biomarkers for use in prognosis of mortality in critically ill patients

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JP2022110659A Division JP2022153436A (ja) 2016-06-26 2022-07-08 重篤患者における死亡率の予後診断に使用するためのバイオマーカー

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JP2019530878A true JP2019530878A (ja) 2019-10-24
JP2019530878A5 JP2019530878A5 (https=) 2020-06-11

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JP2019519961A Pending JP2019530878A (ja) 2016-06-26 2017-04-25 重篤患者における死亡率の予後診断に使用するためのバイオマーカー
JP2022110659A Pending JP2022153436A (ja) 2016-06-26 2022-07-08 重篤患者における死亡率の予後診断に使用するためのバイオマーカー

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US (4) US10344332B2 (https=)
EP (1) EP3475473A4 (https=)
JP (2) JP2019530878A (https=)
CN (2) CN109451744B (https=)
AU (2) AU2017289600A1 (https=)
CA (1) CA3024724A1 (https=)
WO (1) WO2018004806A1 (https=)

Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2023525489A (ja) * 2020-04-29 2023-06-16 インフラマティックス インコーポレイテッド ウイルス感染症を有する対象の死亡率リスクの決定

Families Citing this family (8)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2018004806A1 (en) * 2016-06-26 2018-01-04 The Board Of Trustees Of The Leland Stanford Junior University Biomarkers for use in prognosis of mortality in critically ill patients
WO2018140256A1 (en) * 2017-01-17 2018-08-02 Duke University Gene expression signatures useful to predict or diagnose sepsis and methods of using the same
AU2019227186B2 (en) 2018-02-27 2025-07-10 The Board Of Trustees Of The Leland Stanford Junior University Classifier for identification of robust sepsis subtypes
AU2020244763A1 (en) * 2019-03-22 2021-09-30 Inflammatix, Inc. Systems and methods for deriving and optimizing classifiers from multiple datasets
JP2022530323A (ja) 2019-04-28 2022-06-29 ビスビュー メディカル,インコーポレイテッド デジタル検出能力および無線接続性を有する分子診断デバイス
EP4052042A1 (en) * 2019-10-28 2022-09-07 F. Hoffmann-La Roche AG Sepsis management
EP4217067A4 (en) * 2020-09-25 2025-02-12 The Board Of Trustees Of The Leland Stanford Junior University Method for determining a virally-infected subject's risk of developing severe symptoms
CN114606308A (zh) * 2022-01-26 2022-06-10 江门市中心医院 脓毒症ards的预后与治疗标志物

Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20050196817A1 (en) * 2004-01-20 2005-09-08 Molecular Staging Inc. Biomarkers for sepsis
US20090203534A1 (en) * 2005-10-21 2009-08-13 Hamid Hossain Expression profiles for predicting septic conditions
WO2012096245A1 (ja) * 2011-01-11 2012-07-19 三菱化学メディエンス株式会社 敗血症の予後の予測方法
JP2013527453A (ja) * 2010-05-17 2013-06-27 エフ.ホフマン−ラ ロシュ アーゲー 急性炎症における生存および回復を推定するためのgdf−15に基づく手段および方法

Family Cites Families (12)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5245615A (en) 1991-06-06 1993-09-14 International Business Machines Corporation Diagnostic system and interface for a personal computer
EA001835B1 (ru) 1996-07-12 2001-08-27 Ферст Опинион Корпорейшн Автоматизированный способ диагностики (варианты)
WO2004044556A2 (en) * 2002-11-12 2004-05-27 Becton, Dickinson And Company Diagnosis of sepsis or sirs using biomarker profiles
CN101208602A (zh) * 2005-04-15 2008-06-25 贝克顿迪金森公司 脓毒症的诊断
US20090297474A1 (en) * 2005-11-25 2009-12-03 Dermot Kelleher Method for Detecting or Monitoring Sepsis by Analysing Cytokine mRNA Expression Levels
US20110312521A1 (en) * 2010-06-17 2011-12-22 Baylor Research Institute Genomic Transcriptional Analysis as a Tool for Identification of Pathogenic Diseases
US20120034214A1 (en) * 2010-07-22 2012-02-09 Isis Innovation Limited Methods and kits for determining the prognosis of pulmonary sarcoidosis
WO2012115885A1 (en) * 2011-02-22 2012-08-30 Caris Life Sciences Luxembourg Holdings, S.A.R.L. Circulating biomarkers
US20150024969A1 (en) * 2011-09-12 2015-01-22 The Children's Mercy Hospital Sepsis prognosis biomarkers
US10190169B2 (en) 2013-06-20 2019-01-29 Immunexpress Pty Ltd Biomarker identification
EP3117030B1 (en) * 2014-03-14 2022-04-27 Hancock, Robert, E.W. Diagnostic for sepsis
WO2018004806A1 (en) * 2016-06-26 2018-01-04 The Board Of Trustees Of The Leland Stanford Junior University Biomarkers for use in prognosis of mortality in critically ill patients

Patent Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20050196817A1 (en) * 2004-01-20 2005-09-08 Molecular Staging Inc. Biomarkers for sepsis
US20090203534A1 (en) * 2005-10-21 2009-08-13 Hamid Hossain Expression profiles for predicting septic conditions
JP2013527453A (ja) * 2010-05-17 2013-06-27 エフ.ホフマン−ラ ロシュ アーゲー 急性炎症における生存および回復を推定するためのgdf−15に基づく手段および方法
WO2012096245A1 (ja) * 2011-01-11 2012-07-19 三菱化学メディエンス株式会社 敗血症の予後の予測方法

Non-Patent Citations (2)

* Cited by examiner, † Cited by third party
Title
PARNELL GRANT P. ET AL.: "IDENTIFYING KEY REGULATORY GENES IN THE WHOLE BLOOD OF SEPTIC PATIENTS TO MONITOR UNDERLYING IMMUNE", SHOCK, vol. 40, no. 3, JPN6021008733, 2013, pages 166 - 174, ISSN: 0004721769 *
TSALIK EPHRAIM L. ET AL.: "An integrated transcriptome and expressed variant analysis of sepsis survival and death", GENOME MEDICINE, vol. 6, no. 11, JPN6021008735, 2014, pages 111, ISSN: 0004462785 *

Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2023525489A (ja) * 2020-04-29 2023-06-16 インフラマティックス インコーポレイテッド ウイルス感染症を有する対象の死亡率リスクの決定

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US20190300959A1 (en) 2019-10-03
JP2022153436A (ja) 2022-10-12
AU2022211785A1 (en) 2022-08-25
US11608531B2 (en) 2023-03-21
EP3475473A4 (en) 2020-01-22
EP3475473A1 (en) 2019-05-01
AU2017289600A1 (en) 2018-12-06
CA3024724A1 (en) 2018-01-04
US10344332B2 (en) 2019-07-09
WO2018004806A1 (en) 2018-01-04
US20180274031A1 (en) 2018-09-27
US20190106750A1 (en) 2019-04-11
CN115161389A (zh) 2022-10-11
CN109451744B (zh) 2022-08-05
CN109451744A (zh) 2019-03-08
US20240011096A1 (en) 2024-01-11
US10648033B2 (en) 2020-05-12

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