JP2018529326A5 - - Google Patents
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- JP2018529326A5 JP2018529326A5 JP2018508166A JP2018508166A JP2018529326A5 JP 2018529326 A5 JP2018529326 A5 JP 2018529326A5 JP 2018508166 A JP2018508166 A JP 2018508166A JP 2018508166 A JP2018508166 A JP 2018508166A JP 2018529326 A5 JP2018529326 A5 JP 2018529326A5
- Authority
- JP
- Japan
- Prior art keywords
- nickase
- nucleic acid
- item
- sample
- dna
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
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Priority Applications (1)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| JP2021193224A JP7792241B2 (ja) | 2015-08-19 | 2021-11-29 | 核酸ガイド化ヌクレアーゼをベースとした系を使用する核酸の捕捉 |
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201562207359P | 2015-08-19 | 2015-08-19 | |
| US62/207,359 | 2015-08-19 | ||
| PCT/US2016/047631 WO2017031360A1 (en) | 2015-08-19 | 2016-08-18 | Capture of nucleic acids using a nucleic acid-guided nuclease-based system |
Related Child Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2021193224A Division JP7792241B2 (ja) | 2015-08-19 | 2021-11-29 | 核酸ガイド化ヌクレアーゼをベースとした系を使用する核酸の捕捉 |
Publications (3)
| Publication Number | Publication Date |
|---|---|
| JP2018529326A JP2018529326A (ja) | 2018-10-11 |
| JP2018529326A5 true JP2018529326A5 (enExample) | 2019-09-26 |
| JP6986509B2 JP6986509B2 (ja) | 2021-12-22 |
Family
ID=58050956
Family Applications (2)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2018508166A Active JP6986509B2 (ja) | 2015-08-19 | 2016-08-18 | 核酸ガイド化ヌクレアーゼをベースとした系を使用する核酸の捕捉 |
| JP2021193224A Active JP7792241B2 (ja) | 2015-08-19 | 2021-11-29 | 核酸ガイド化ヌクレアーゼをベースとした系を使用する核酸の捕捉 |
Family Applications After (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2021193224A Active JP7792241B2 (ja) | 2015-08-19 | 2021-11-29 | 核酸ガイド化ヌクレアーゼをベースとした系を使用する核酸の捕捉 |
Country Status (8)
| Country | Link |
|---|---|
| US (3) | US10538758B2 (enExample) |
| EP (2) | EP3985111A1 (enExample) |
| JP (2) | JP6986509B2 (enExample) |
| CN (1) | CN108138176B (enExample) |
| AU (1) | AU2016308283B2 (enExample) |
| CA (1) | CA2995983A1 (enExample) |
| DK (1) | DK3337898T3 (enExample) |
| WO (1) | WO2017031360A1 (enExample) |
Families Citing this family (61)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| EP2734621B1 (en) | 2011-07-22 | 2019-09-04 | President and Fellows of Harvard College | Evaluation and improvement of nuclease cleavage specificity |
| US9163284B2 (en) | 2013-08-09 | 2015-10-20 | President And Fellows Of Harvard College | Methods for identifying a target site of a Cas9 nuclease |
| US9359599B2 (en) | 2013-08-22 | 2016-06-07 | President And Fellows Of Harvard College | Engineered transcription activator-like effector (TALE) domains and uses thereof |
| US9322037B2 (en) | 2013-09-06 | 2016-04-26 | President And Fellows Of Harvard College | Cas9-FokI fusion proteins and uses thereof |
| US9340800B2 (en) | 2013-09-06 | 2016-05-17 | President And Fellows Of Harvard College | Extended DNA-sensing GRNAS |
| US9526784B2 (en) | 2013-09-06 | 2016-12-27 | President And Fellows Of Harvard College | Delivery system for functional nucleases |
| US20150165054A1 (en) | 2013-12-12 | 2015-06-18 | President And Fellows Of Harvard College | Methods for correcting caspase-9 point mutations |
| EP3105325B2 (en) | 2014-02-13 | 2024-10-23 | Takara Bio USA, Inc. | Methods of depleting a target molecule from an initial collection of nucleic acids, and compositions and kits for practicing the same |
| CA2956224A1 (en) | 2014-07-30 | 2016-02-11 | President And Fellows Of Harvard College | Cas9 proteins including ligand-dependent inteins |
| AU2015364286B2 (en) | 2014-12-20 | 2021-11-04 | Arc Bio, Llc | Compositions and methods for targeted depletion, enrichment, and partitioning of nucleic acids using CRISPR/Cas system proteins |
| EP3985111A1 (en) | 2015-08-19 | 2022-04-20 | Arc Bio, LLC | Capture of nucleic acids using a nucleic acid-guided nuclease-based system |
| EP4434589A3 (en) | 2015-10-23 | 2025-05-14 | President and Fellows of Harvard College | Evolved cas9 proteins for gene editing |
| EP3871695A1 (en) | 2015-12-07 | 2021-09-01 | Arc Bio, LLC | Methods and compositions for the making and using of guide nucleic acids |
| JP7231935B2 (ja) | 2016-08-03 | 2023-03-08 | プレジデント アンド フェローズ オブ ハーバード カレッジ | アデノシン核酸塩基編集因子およびそれらの使用 |
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| WO2018039438A1 (en) | 2016-08-24 | 2018-03-01 | President And Fellows Of Harvard College | Incorporation of unnatural amino acids into proteins using base editing |
| EP4219746B1 (en) * | 2016-09-02 | 2024-12-18 | New England Biolabs, Inc. | Analysis of chromatin using a nicking enzyme |
| GB201616590D0 (en) | 2016-09-29 | 2016-11-16 | Oxford Nanopore Technologies Limited | Method |
| AU2017342543B2 (en) | 2016-10-14 | 2024-06-27 | President And Fellows Of Harvard College | AAV delivery of nucleobase editors |
| WO2018119359A1 (en) | 2016-12-23 | 2018-06-28 | President And Fellows Of Harvard College | Editing of ccr5 receptor gene to protect against hiv infection |
| CN110662556A (zh) | 2017-03-09 | 2020-01-07 | 哈佛大学的校长及成员们 | 癌症疫苗 |
| US11898179B2 (en) | 2017-03-09 | 2024-02-13 | President And Fellows Of Harvard College | Suppression of pain by gene editing |
| JP2020510439A (ja) | 2017-03-10 | 2020-04-09 | プレジデント アンド フェローズ オブ ハーバード カレッジ | シトシンからグアニンへの塩基編集因子 |
| WO2018176009A1 (en) | 2017-03-23 | 2018-09-27 | President And Fellows Of Harvard College | Nucleobase editors comprising nucleic acid programmable dna binding proteins |
| US11560566B2 (en) | 2017-05-12 | 2023-01-24 | President And Fellows Of Harvard College | Aptazyme-embedded guide RNAs for use with CRISPR-Cas9 in genome editing and transcriptional activation |
| AU2018279112B2 (en) * | 2017-06-07 | 2024-11-07 | Arc Bio, Llc | Creation and use of guide nucleic acids |
| EP3638781A4 (en) * | 2017-06-13 | 2021-03-17 | Genetics Research, LLC, D/B/A ZS Genetics, Inc. | PLASMA / SERUM TARGET ENRICHMENT |
| US20180355417A1 (en) * | 2017-06-13 | 2018-12-13 | Genetics Research, Llc, D/B/A Zs Genetics, Inc. | Rare nucleic acid detection |
| US10081829B1 (en) | 2017-06-13 | 2018-09-25 | Genetics Research, Llc | Detection of targeted sequence regions |
| EP3638813A4 (en) | 2017-06-13 | 2021-06-02 | Genetics Research, LLC, D/B/A ZS Genetics, Inc. | ISOLATION OF TARGET NUCLEIC ACIDS |
| US10527608B2 (en) | 2017-06-13 | 2020-01-07 | Genetics Research, Llc | Methods for rare event detection |
| WO2018231945A1 (en) * | 2017-06-13 | 2018-12-20 | Genetics Research, Llc, D/B/A Zs Genetics, Inc. | Negative-positive enrichment for nucleic acid detection |
| US10947599B2 (en) | 2017-06-13 | 2021-03-16 | Genetics Research, Llc | Tumor mutation burden |
| CA3065326A1 (en) * | 2017-06-14 | 2018-12-20 | Wisconsin Alumni Research Foundation | Modified guide rnas, crispr-ribonucleotprotein complexes and methods of use |
| CN107190008A (zh) * | 2017-07-19 | 2017-09-22 | 苏州吉赛基因测序科技有限公司 | 一种基于Crispr/cas9的捕获基因组目标序列的方法及其在高通量测序中的应用 |
| US11732274B2 (en) | 2017-07-28 | 2023-08-22 | President And Fellows Of Harvard College | Methods and compositions for evolving base editors using phage-assisted continuous evolution (PACE) |
| WO2019139645A2 (en) | 2017-08-30 | 2019-07-18 | President And Fellows Of Harvard College | High efficiency base editors comprising gam |
| CA3077086A1 (en) | 2017-10-04 | 2019-04-11 | President And Fellows Of Harvard College | Systems, methods, and compositions for targeted nucleic acid editing |
| KR20200121782A (ko) | 2017-10-16 | 2020-10-26 | 더 브로드 인스티튜트, 인코퍼레이티드 | 아데노신 염기 편집제의 용도 |
| US12406749B2 (en) | 2017-12-15 | 2025-09-02 | The Broad Institute, Inc. | Systems and methods for predicting repair outcomes in genetic engineering |
| CN110157727A (zh) | 2017-12-21 | 2019-08-23 | 中国科学院遗传与发育生物学研究所 | 植物碱基编辑方法 |
| US12157760B2 (en) | 2018-05-23 | 2024-12-03 | The Broad Institute, Inc. | Base editors and uses thereof |
| WO2019237032A1 (en) | 2018-06-07 | 2019-12-12 | Arc Bio, Llc | Compositions and methods for making guide nucleic acids |
| US12522807B2 (en) | 2018-07-09 | 2026-01-13 | The Broad Institute, Inc. | RNA programmable epigenetic RNA modifiers and uses thereof |
| CN109182454A (zh) * | 2018-08-22 | 2019-01-11 | 杭州恺思医疗器械有限公司 | 一种捕获基因组特定dna片段的方法 |
| CN109837273B (zh) * | 2018-09-17 | 2021-06-29 | 东南大学 | 一种crispr辅助dna靶向富集方法及其应用 |
| JP7436493B2 (ja) | 2018-10-04 | 2024-02-21 | エイアールシー バイオ リミテッド ライアビリティ カンパニー | 次世代シーケンスにおいて低サンプルインプットを扱うための正規化対照 |
| WO2020092453A1 (en) | 2018-10-29 | 2020-05-07 | The Broad Institute, Inc. | Nucleobase editors comprising geocas9 and uses thereof |
| WO2020154500A1 (en) | 2019-01-23 | 2020-07-30 | The Broad Institute, Inc. | Supernegatively charged proteins and uses thereof |
| MX2021011426A (es) | 2019-03-19 | 2022-03-11 | Broad Inst Inc | Metodos y composiciones para editar secuencias de nucleótidos. |
| WO2020214842A1 (en) | 2019-04-17 | 2020-10-22 | The Broad Institute, Inc. | Adenine base editors with reduced off-target effects |
| CN110205318A (zh) * | 2019-05-15 | 2019-09-06 | 杭州杰毅生物技术有限公司 | 基于CRISPR-Cas去除宿主基因组DNA的宏基因组提取方法 |
| GB201913997D0 (en) * | 2019-09-27 | 2019-11-13 | Oxford Nanopore Tech Ltd | Method |
| US12435330B2 (en) | 2019-10-10 | 2025-10-07 | The Broad Institute, Inc. | Methods and compositions for prime editing RNA |
| WO2021141970A1 (en) * | 2020-01-06 | 2021-07-15 | Pairwise Plants Services, Inc. | Recruitment of dna polymerase for templated editing |
| WO2021226558A1 (en) | 2020-05-08 | 2021-11-11 | The Broad Institute, Inc. | Methods and compositions for simultaneous editing of both strands of a target double-stranded nucleotide sequence |
| EP4165179A4 (en) * | 2020-06-12 | 2024-10-09 | Qiagen Sciences LLC | METHODS FOR ENRICHING TARGET NUCLEIC ACID MOLECULES AND USES THEREOF |
| CN112159822A (zh) * | 2020-09-30 | 2021-01-01 | 扬州大学 | 一种PS转座酶与CRISPR/dCpf1融合蛋白表达载体及其介导的定点整合方法 |
| US12522865B2 (en) * | 2020-10-06 | 2026-01-13 | Harbinger Health, Inc. | Nucleic acid enrichment method |
| CN115927539A (zh) * | 2022-09-14 | 2023-04-07 | 首都体育学院 | 靶标核酸富集方法及其试剂盒和应用 |
| WO2025132779A2 (en) * | 2023-12-22 | 2025-06-26 | F. Hoffmann-La Roche Ag | Methods and compositions for nucleic acid library and template preparation for duplexed sequencing by expansion |
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| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US177444A (en) * | 1876-05-16 | Improvement in transplanters | ||
| US5948902A (en) | 1997-11-20 | 1999-09-07 | South Alabama Medical Science Foundation | Antisense oligonucleotides to human serine/threonine protein phosphatase genes |
| US7166432B2 (en) | 1999-03-12 | 2007-01-23 | Integragen | Compositions and methods for genetic analysis |
| EP1606417A2 (en) * | 2003-03-07 | 2005-12-21 | Rubicon Genomics Inc. | In vitro dna immortalization and whole genome amplification using libraries generated from randomly fragmented dna |
| US20050233340A1 (en) | 2004-04-20 | 2005-10-20 | Barrett Michael T | Methods and compositions for assessing CpG methylation |
| US20090318305A1 (en) | 2008-06-18 | 2009-12-24 | Xi Erick Lin | Methods for selectively capturing and amplifying exons or targeted genomic regions from biological samples |
| WO2012051327A2 (en) | 2010-10-12 | 2012-04-19 | Cornell University | Method of dual-adapter recombination for efficient concatenation of multiple dna fragments in shuffled or specified arrangements |
| CA2821299C (en) * | 2010-11-05 | 2019-02-12 | Frank J. Steemers | Linking sequence reads using paired code tags |
| CA2848304A1 (en) | 2011-09-09 | 2013-03-14 | The Board Of Trustees Of The Leland Stanford Junior University | Methods for sequencing a polynucleotide |
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| WO2013141680A1 (en) | 2012-03-20 | 2013-09-26 | Vilnius University | RNA-DIRECTED DNA CLEAVAGE BY THE Cas9-crRNA COMPLEX |
| US9637739B2 (en) | 2012-03-20 | 2017-05-02 | Vilnius University | RNA-directed DNA cleavage by the Cas9-crRNA complex |
| PL4289948T3 (pl) | 2012-05-25 | 2025-06-02 | The Regents Of The University Of California | Sposoby i kompozycje do modyfikacji kierowanego na rna docelowego dna i do nakierowanej na rna modulacji transkrypcji |
| US9957549B2 (en) | 2012-06-18 | 2018-05-01 | Nugen Technologies, Inc. | Compositions and methods for negative selection of non-desired nucleic acid sequences |
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| PL2784162T3 (pl) | 2012-12-12 | 2016-01-29 | Broad Inst Inc | Opracowanie systemów, metod oraz zoptymalizowanych kompozycji przewodnikowych do manipulacji sekwencyjnej |
| CN105358714B (zh) | 2013-05-04 | 2020-03-24 | 斯坦福大学托管董事会 | 从含有少量靶标dna的样品富集dna测序文库 |
| EP4617376A3 (en) | 2013-05-23 | 2025-12-10 | The Board of Trustees of the Leland Stanford Junior University | Transposition into native chromatin for personal epigenomics |
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| US10421957B2 (en) * | 2013-07-29 | 2019-09-24 | Agilent Technologies, Inc. | DNA assembly using an RNA-programmable nickase |
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| CN105829589B (zh) | 2013-11-07 | 2021-02-02 | 小利兰·斯坦福大学理事会 | 用于分析人体微生物组及其组分的无细胞核酸 |
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| JP6806668B2 (ja) | 2014-08-19 | 2021-01-06 | プレジデント アンド フェローズ オブ ハーバード カレッジ | 核酸をプロービングおよびマッピングするためのｒｎａ誘導型システム |
| US10435685B2 (en) | 2014-08-19 | 2019-10-08 | Pacific Biosciences Of California, Inc. | Compositions and methods for enrichment of nucleic acids |
| AU2015364286B2 (en) | 2014-12-20 | 2021-11-04 | Arc Bio, Llc | Compositions and methods for targeted depletion, enrichment, and partitioning of nucleic acids using CRISPR/Cas system proteins |
| AU2016264102A1 (en) | 2015-05-18 | 2017-12-21 | Karius, Inc. | Compositions and methods for enriching populations of nucleic acids |
| WO2016196805A1 (en) | 2015-06-05 | 2016-12-08 | The Regents Of The University Of California | Methods and compositions for generating crispr/cas guide rnas |
| EP3985111A1 (en) | 2015-08-19 | 2022-04-20 | Arc Bio, LLC | Capture of nucleic acids using a nucleic acid-guided nuclease-based system |
| EP3360067B1 (en) | 2015-10-07 | 2025-10-01 | The Board of Trustees of the Leland Stanford Junior University | Techniques for determining whether an individual is included in ensemble genomic data |
| AU2016340078A1 (en) | 2015-10-16 | 2018-04-12 | Temple University - Of The Commonwealth System Of Higher Education | Methods and compositions utilizing Cpf1 for RNA-guided gene editing |
| EP3433382B1 (en) | 2016-03-25 | 2021-09-01 | Karius, Inc. | Synthetic nucleic acid spike-ins |
| WO2018035062A1 (en) | 2016-08-16 | 2018-02-22 | The Regents Of The University Of California | Method for finding low abundance sequences by hybridization (flash) |
| US20180051320A1 (en) | 2016-08-22 | 2018-02-22 | The Regents Of The University Of California | Depletion of abundant sequences by hybridization (dash) |
| EP3526344B1 (en) | 2016-10-13 | 2020-09-30 | Biomérieux | Identification and antibiotic characterization of pathogens in metagenomic sample |
-
2016
- 2016-08-18 EP EP21188035.6A patent/EP3985111A1/en active Pending
- 2016-08-18 WO PCT/US2016/047631 patent/WO2017031360A1/en not_active Ceased
- 2016-08-18 EP EP16837863.6A patent/EP3337898B1/en active Active
- 2016-08-18 DK DK16837863.6T patent/DK3337898T3/da active
- 2016-08-18 CN CN201680057464.3A patent/CN108138176B/zh active Active
- 2016-08-18 AU AU2016308283A patent/AU2016308283B2/en active Active
- 2016-08-18 JP JP2018508166A patent/JP6986509B2/ja active Active
- 2016-08-18 CA CA2995983A patent/CA2995983A1/en active Pending
- 2016-08-18 US US15/520,052 patent/US10538758B2/en active Active
-
2019
- 2019-12-02 US US16/700,493 patent/US20200087652A1/en not_active Abandoned
-
2021
- 2021-11-29 JP JP2021193224A patent/JP7792241B2/ja active Active
-
2023
- 2023-02-01 US US18/163,196 patent/US20240132872A1/en active Pending
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