JP2013531983A5 - - Google Patents

Download PDF

Info

Publication number
JP2013531983A5
JP2013531983A5 JP2013514408A JP2013514408A JP2013531983A5 JP 2013531983 A5 JP2013531983 A5 JP 2013531983A5 JP 2013514408 A JP2013514408 A JP 2013514408A JP 2013514408 A JP2013514408 A JP 2013514408A JP 2013531983 A5 JP2013531983 A5 JP 2013531983A5
Authority
JP
Japan
Prior art keywords
mixture
target
genome
sequence
probe
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Pending
Application number
JP2013514408A
Other languages
English (en)
Japanese (ja)
Other versions
JP2013531983A (ja
Filing date
Publication date
Application filed filed Critical
Priority claimed from PCT/US2011/040106 external-priority patent/WO2011156795A2/en
Publication of JP2013531983A publication Critical patent/JP2013531983A/ja
Publication of JP2013531983A5 publication Critical patent/JP2013531983A5/ja
Pending legal-status Critical Current

Links

JP2013514408A 2010-06-11 2011-06-10 多重生物検出のための核酸ならびにその使用および製造方法 Pending JP2013531983A (ja)

Applications Claiming Priority (7)

Application Number Priority Date Filing Date Title
US35401110P 2010-06-11 2010-06-11
US61/354,011 2010-06-11
US37404110P 2010-08-16 2010-08-16
US61/374,041 2010-08-16
US201161439167P 2011-02-03 2011-02-03
US61/439,167 2011-02-03
PCT/US2011/040106 WO2011156795A2 (en) 2010-06-11 2011-06-10 Nucleic acids for multiplex organism detection and methods of use and making the same

Publications (2)

Publication Number Publication Date
JP2013531983A JP2013531983A (ja) 2013-08-15
JP2013531983A5 true JP2013531983A5 (enExample) 2014-09-04

Family

ID=45098726

Family Applications (1)

Application Number Title Priority Date Filing Date
JP2013514408A Pending JP2013531983A (ja) 2010-06-11 2011-06-10 多重生物検出のための核酸ならびにその使用および製造方法

Country Status (6)

Country Link
US (1) US20130261196A1 (enExample)
EP (1) EP2580354A4 (enExample)
JP (1) JP2013531983A (enExample)
AU (1) AU2011265205A1 (enExample)
SG (1) SG186987A1 (enExample)
WO (1) WO2011156795A2 (enExample)

Families Citing this family (58)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20100022414A1 (en) 2008-07-18 2010-01-28 Raindance Technologies, Inc. Droplet Libraries
US9562837B2 (en) 2006-05-11 2017-02-07 Raindance Technologies, Inc. Systems for handling microfludic droplets
US12038438B2 (en) 2008-07-18 2024-07-16 Bio-Rad Laboratories, Inc. Enzyme quantification
US9399797B2 (en) 2010-02-12 2016-07-26 Raindance Technologies, Inc. Digital analyte analysis
US10351905B2 (en) * 2010-02-12 2019-07-16 Bio-Rad Laboratories, Inc. Digital analyte analysis
EP4435111A1 (en) 2010-02-12 2024-09-25 Bio-Rad Laboratories, Inc. Digital analyte analysis
EP2675819B1 (en) 2011-02-18 2020-04-08 Bio-Rad Laboratories, Inc. Compositions and methods for molecular labeling
WO2013173795A1 (en) * 2012-05-18 2013-11-21 Pathogenica, Inc. Realtime sequence based biosurveillance system
WO2013173774A2 (en) * 2012-05-18 2013-11-21 Pathogenica, Inc. Molecular inversion probes
WO2014113204A1 (en) 2013-01-17 2014-07-24 Personalis, Inc. Methods and systems for genetic analysis
EP3988671A1 (en) * 2013-02-20 2022-04-27 Emory University Compositions for sequencing nucleic acids in mixtures
US20160110498A1 (en) 2013-03-13 2016-04-21 Illumina, Inc. Methods and systems for aligning repetitive dna elements
CA2905410A1 (en) * 2013-03-15 2014-09-25 Abbott Molecular Inc. Systems and methods for detection of genomic copy number changes
US20150141257A1 (en) * 2013-08-02 2015-05-21 Roche Nimblegen, Inc. Sequence capture method using specialized capture probes (heatseq)
EP3038649B1 (en) * 2013-08-26 2019-09-25 The Translational Genomics Research Institute Single molecule-overlapping read analysis for minor variant mutation detection in pathogen samples
WO2015031689A1 (en) 2013-08-30 2015-03-05 Personalis, Inc. Methods and systems for genomic analysis
WO2015071552A1 (en) * 2013-11-18 2015-05-21 Teknologian Tutkimuskeskus Vtt Multi-unit probes with high specificity and a method of designing the same
US10883145B2 (en) 2014-04-11 2021-01-05 The Trustees Of The University Of Pennsylvania Compositions and methods for metagenome biomarker detection
JP6976167B2 (ja) 2014-06-13 2021-12-08 キュー−リネア エービー 微生物の検出及び特徴付け方法
EP2960818A1 (en) * 2014-06-24 2015-12-30 Institut Pasteur Method, device, and computer program for assembling pieces of chromosomes from one or several organisms
WO2016070131A1 (en) 2014-10-30 2016-05-06 Personalis, Inc. Methods for using mosaicism in nucleic acids sampled distal to their origin
TWI577803B (zh) * 2015-01-15 2017-04-11 昕穎生醫技術股份有限公司 多重抗藥性結核病篩檢方法及套組
GB201507026D0 (en) 2015-04-24 2015-06-10 Linea Ab Q Medical sample transportation container
CN108138226B (zh) * 2015-10-18 2022-02-11 阿费梅特里克斯公司 单核苷酸多态性和插入缺失的多等位基因基因分型
EP3433382B1 (en) * 2016-03-25 2021-09-01 Karius, Inc. Synthetic nucleic acid spike-ins
GB2554767A (en) 2016-04-21 2018-04-11 Q Linea Ab Detecting and characterising a microorganism
US11299783B2 (en) 2016-05-27 2022-04-12 Personalis, Inc. Methods and systems for genetic analysis
US10337051B2 (en) 2016-06-16 2019-07-02 The Regents Of The University Of California Methods and compositions for detecting a target RNA
JP2019532644A (ja) 2016-09-30 2019-11-14 ザ リージェンツ オブ ザ ユニバーシティ オブ カリフォルニア Ｒｎａ誘導型核酸修飾酵素及びその使用方法
WO2018064352A1 (en) 2016-09-30 2018-04-05 The Regents Of The University Of California Rna-guided nucleic acid modifying enzymes and methods of use thereof
US10815525B2 (en) 2016-12-22 2020-10-27 10X Genomics, Inc. Methods and systems for processing polynucleotides
US10550429B2 (en) 2016-12-22 2020-02-04 10X Genomics, Inc. Methods and systems for processing polynucleotides
CN110730825B (zh) * 2017-05-23 2023-08-11 新泽西鲁特格斯州立大学 用双相互作用发夹探针进行的靶标介导的原位信号放大
WO2019028462A1 (en) 2017-08-04 2019-02-07 Billiontoone, Inc. TARGET-ASSOCIATED MOLECULES FOR CHARACTERIZATION ASSOCIATED WITH BIOLOGICAL TARGETS
KR102372572B1 (ko) 2017-08-04 2022-03-08 빌리언투원, 인크. 생물학적 표적과 연관된 정량화에서 표적 연관 분자를 이용한 서열분석 출력값 측정 및 분석
US11519024B2 (en) 2017-08-04 2022-12-06 Billiontoone, Inc. Homologous genomic regions for characterization associated with biological targets
CN117487776A (zh) 2017-11-01 2024-02-02 加利福尼亚大学董事会 Casz组合物和使用方法
WO2019089804A1 (en) 2017-11-01 2019-05-09 The Regents Of The University Of California Casy compositions and methods of use
US11970719B2 (en) 2017-11-01 2024-04-30 The Regents Of The University Of California Class 2 CRISPR/Cas compositions and methods of use
DK3735470T3 (da) 2018-01-05 2024-02-26 Billiontoone Inc Kvalitetskontroltemplates til sikring af validiteten af sekventeringsbaserede analyser
CN112005115A (zh) 2018-02-12 2020-11-27 10X基因组学有限公司 表征来自单个细胞或细胞群体的多种分析物的方法
US11639928B2 (en) 2018-02-22 2023-05-02 10X Genomics, Inc. Methods and systems for characterizing analytes from individual cells or cell populations
WO2019169028A1 (en) 2018-02-28 2019-09-06 10X Genomics, Inc. Transcriptome sequencing through random ligation
US11959077B2 (en) 2018-05-21 2024-04-16 Battelle Memorial Institute Methods and control compositions for sequencing
US10801064B2 (en) * 2018-05-31 2020-10-13 Personalis, Inc. Compositions, methods and systems for processing or analyzing multi-species nucleic acid samples
WO2020028729A1 (en) 2018-08-01 2020-02-06 Mammoth Biosciences, Inc. Programmable nuclease compositions and methods of use thereof
EP3833776A4 (en) 2018-08-06 2022-04-27 Billiontoone, Inc. DILUTION MARKER FOR QUANTIFICATION OF BIOLOGICAL TARGETS
DK4428234T3 (da) 2018-11-21 2026-01-26 Karius Inc Direkte-til-bibliotek-fremgangsmåder, systemer og sammensætninger
WO2020124003A1 (en) 2018-12-13 2020-06-18 Battelle Memorial Institute Methods and control compositions for a quantitative polymerase chain reaction
WO2020142754A2 (en) 2019-01-04 2020-07-09 Mammoth Biosciences, Inc. Programmable nuclease improvements and compositions and methods for nucleic acid amplification and detection
WO2020185791A1 (en) 2019-03-11 2020-09-17 10X Genomics, Inc. Systems and methods for processing optically tagged beads
CN111508561B (zh) * 2019-07-04 2024-02-06 北京希望组生物科技有限公司 同源序列和同源序列中串联重复序列的检测方法、计算机可读介质和应用
CN110592208B (zh) * 2019-10-08 2022-05-03 北京诺禾致源科技股份有限公司 地中海贫血症三类亚型的捕获探针组合物及其应用方法和应用装置
EP4055610A4 (en) 2019-11-05 2023-11-29 Personalis, Inc. ESTIMATION OF TUMOR PURITY FROM SINGLE SAMPLES
EP4298244A1 (en) 2021-02-23 2024-01-03 10X Genomics, Inc. Probe-based analysis of nucleic acids and proteins
EP4108783B1 (en) * 2021-06-24 2024-02-21 Miltenyi Biotec B.V. & Co. KG Spatial sequencing with mictag
EP4413580A4 (en) 2021-10-05 2025-08-13 Personalis Inc PERSONALIZED TESTS FOR PERSONALIZED CANCER MONITORING
CA3255101A1 (en) 2022-03-21 2023-09-28 Billion Toone, Inc. Counting of circulating methylated cell-free DNA molecules for treatment monitoring

Family Cites Families (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20030134293A1 (en) * 1999-11-16 2003-07-17 Zhiping Liu Method for rapid and accurate identification of microorganisms
ATE380883T1 (de) * 2000-10-24 2007-12-15 Univ Leland Stanford Junior Direkte multiplex charakterisierung von genomischer dna
WO2004001412A1 (ja) * 2002-06-24 2003-12-31 Canon Kabushiki Kaisha 標準プローブを持つｄｎａマイクロアレイ及び該アレイを有するキット
US7618780B2 (en) * 2004-05-20 2009-11-17 Trillion Genomics Limited Use of mass labelled probes to detect target nucleic acids using mass spectrometry
US20110177960A1 (en) * 2006-03-10 2011-07-21 Ellen Murphy Microarray for monitoring gene expression in multiple strains of Streptococcus pneumoniae
US7897747B2 (en) * 2006-05-25 2011-03-01 The Board Of Trustees Of The Leland Stanford Junior University Method to produce single stranded DNA of defined length and sequence and DNA probes produced thereby
WO2010142017A1 (en) * 2009-06-09 2010-12-16 Defyrus, Inc . Administration of interferon for prophylaxis against or treatment of pathogenic infection

Similar Documents

Publication Publication Date Title
JP2013531983A5 (enExample)
Teer et al. Systematic comparison of three genomic enrichment methods for massively parallel DNA sequencing
EP2082063B1 (en) Multitag sequencing and ecogenomics analysis
US10760123B2 (en) Sequential sequencing
WO2018217852A1 (en) Crispr based tool for characterizing bacterial serovar diversity
JP2020513856A (ja) 大腸癌の複合バイオマーカーを特定するための配列ベースの糞便微生物群調査データの活用
JP2005504508A5 (enExample)
JP2012525147A5 (enExample)
JP2017526353A (ja) 標的化されたシークエンシングからのデジタル測定値
US20190352711A1 (en) Method for Rapidly Constructing Amplicon Library Through One-Step Process
WO2012109587A1 (en) Microarray for detecting viable organisms
Lin et al. Review on molecular typing methods of pathogens
EP3350351A1 (en) Virome capture sequencing platform, methods of designing and constructing and methods of using
KR101788989B1 (ko) 벼멸구 저항성 벼 품종 판별용 마커 및 이의 용도
WO2010133257A1 (en) Method for detection and identification of bacterial strains belonging to the classes escherichia coli, salmonella, campylobacter and listeria
Bodewes et al. An efficient molecular approach to distinguish chains of measles virus transmission in the elimination phase
Krawczyk et al. Molecular identification and genotyping of staphylococci: Genus, species, strains, clones, lineages, and interspecies exchanges
CN112538538B (zh) 用于脓肿分枝杆菌检测的试剂盒及系统
WO2017117541A1 (en) Sequencing methods
CN103290135A (zh) 一种自闭症基因的筛查方法
JP6713594B2 (ja) ウナギがニホンウナギであるか否かを判定する方法及びキット
RU2478718C2 (ru) Способ обнаружения респираторных вирусных агентов в образце
Gomes et al. Genotypic characterization of avian Escherichia coli by random amplification of polymorphic DNA
US20260028669A1 (en) Methods and compositions for nucleic acid analysis
KR20160009397A (ko) 약제 내성 결핵균을 검출하는 방법