JP2013524848A5 - - Google Patents
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- JP2013524848A5 JP2013524848A5 JP2013509046A JP2013509046A JP2013524848A5 JP 2013524848 A5 JP2013524848 A5 JP 2013524848A5 JP 2013509046 A JP2013509046 A JP 2013509046A JP 2013509046 A JP2013509046 A JP 2013509046A JP 2013524848 A5 JP2013524848 A5 JP 2013524848A5
- Authority
- JP
- Japan
- Prior art keywords
- sample
- clonotype
- cells
- chronotype
- determining
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
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- 238000000034 method Methods 0.000 claims description 85
- 210000004698 lymphocyte Anatomy 0.000 claims description 42
- 108020004414 DNA Proteins 0.000 claims description 14
- 238000012163 sequencing technique Methods 0.000 claims description 13
- 210000001744 T-lymphocyte Anatomy 0.000 claims description 12
- 210000003719 b-lymphocyte Anatomy 0.000 claims description 12
- 210000005259 peripheral blood Anatomy 0.000 claims description 12
- 239000011886 peripheral blood Substances 0.000 claims description 12
- 210000004027 cell Anatomy 0.000 claims description 11
- 230000008521 reorganization Effects 0.000 claims description 10
- 150000007523 nucleic acids Chemical class 0.000 claims description 7
- 230000000392 somatic effect Effects 0.000 claims description 7
- 108020004707 nucleic acids Proteins 0.000 claims description 5
- 102000039446 nucleic acids Human genes 0.000 claims description 5
- 210000004976 peripheral blood cell Anatomy 0.000 claims description 5
- 210000001082 somatic cell Anatomy 0.000 claims description 5
- 230000008709 cellular rearrangement Effects 0.000 claims description 3
- 238000002372 labelling Methods 0.000 claims description 3
- 238000006467 substitution reaction Methods 0.000 claims description 2
- 230000008707 rearrangement Effects 0.000 claims 7
- 108091008875 B cell receptors Proteins 0.000 claims 1
- 108700005091 Immunoglobulin Genes Proteins 0.000 claims 1
- 108020004511 Recombinant DNA Proteins 0.000 claims 1
- 108091008874 T cell receptors Proteins 0.000 claims 1
- 102000016266 T-Cell Antigen Receptors Human genes 0.000 claims 1
- 108700042075 T-Cell Receptor Genes Proteins 0.000 claims 1
- 239000002773 nucleotide Substances 0.000 claims 1
- 125000003729 nucleotide group Chemical group 0.000 claims 1
- 201000010099 disease Diseases 0.000 description 73
- 208000037265 diseases, disorders, signs and symptoms Diseases 0.000 description 73
- 210000001519 tissue Anatomy 0.000 description 41
- 208000023275 Autoimmune disease Diseases 0.000 description 7
- 210000001185 bone marrow Anatomy 0.000 description 7
- 208000030289 Lymphoproliferative disease Diseases 0.000 description 4
- 201000001268 lymphoproliferative syndrome Diseases 0.000 description 4
- 238000012544 monitoring process Methods 0.000 description 4
- 206010025323 Lymphomas Diseases 0.000 description 3
- 210000000601 blood cell Anatomy 0.000 description 3
- 208000032839 leukemia Diseases 0.000 description 3
- 238000002255 vaccination Methods 0.000 description 3
- 229960005486 vaccine Drugs 0.000 description 3
- 108091028043 Nucleic acid sequence Proteins 0.000 description 2
- 125000003275 alpha amino acid group Chemical group 0.000 description 2
- 210000003563 lymphoid tissue Anatomy 0.000 description 2
- 230000004043 responsiveness Effects 0.000 description 2
- 201000000596 systemic lupus erythematosus Diseases 0.000 description 2
- 206010028980 Neoplasm Diseases 0.000 description 1
- 210000002798 bone marrow cell Anatomy 0.000 description 1
- 210000001175 cerebrospinal fluid Anatomy 0.000 description 1
- 230000001771 impaired effect Effects 0.000 description 1
- 208000015181 infectious disease Diseases 0.000 description 1
- 210000003734 kidney Anatomy 0.000 description 1
- 201000006417 multiple sclerosis Diseases 0.000 description 1
- 230000035755 proliferation Effects 0.000 description 1
- 102000004169 proteins and genes Human genes 0.000 description 1
- 108090000623 proteins and genes Proteins 0.000 description 1
- 230000004044 response Effects 0.000 description 1
- 206010039073 rheumatoid arthritis Diseases 0.000 description 1
- 210000003491 skin Anatomy 0.000 description 1
- 210000001179 synovial fluid Anatomy 0.000 description 1
Applications Claiming Priority (7)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US33217510P | 2010-05-06 | 2010-05-06 | |
| US61/332,175 | 2010-05-06 | ||
| US45574310P | 2010-10-25 | 2010-10-25 | |
| US61/455,743 | 2010-10-25 | ||
| US201161446822P | 2011-02-25 | 2011-02-25 | |
| US61/446,822 | 2011-02-25 | ||
| PCT/US2011/000791 WO2011139371A1 (en) | 2010-05-06 | 2011-05-04 | Monitoring health and disease status using clonotype profiles |
Related Child Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2017112502A Division JP6246971B2 (ja) | 2010-05-06 | 2017-06-07 | クロノタイププロファイルを用いた健康状態および疾患状態のモニタリング |
Publications (3)
| Publication Number | Publication Date |
|---|---|
| JP2013524848A JP2013524848A (ja) | 2013-06-20 |
| JP2013524848A5 true JP2013524848A5 (enExample) | 2014-06-26 |
| JP6158080B2 JP6158080B2 (ja) | 2017-07-05 |
Family
ID=44903937
Family Applications (4)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2013509046A Active JP6158080B2 (ja) | 2010-05-06 | 2011-05-04 | クロノタイププロファイルを用いた健康状態および疾患状態のモニタリング |
| JP2013509047A Active JP6085249B2 (ja) | 2010-05-06 | 2011-05-04 | 複雑なアンプリコンの配列解析 |
| JP2017112502A Active JP6246971B2 (ja) | 2010-05-06 | 2017-06-07 | クロノタイププロファイルを用いた健康状態および疾患状態のモニタリング |
| JP2017219812A Active JP6533272B2 (ja) | 2010-05-06 | 2017-11-15 | クロノタイププロファイルを用いた健康状態および疾患状態のモニタリング |
Family Applications After (3)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2013509047A Active JP6085249B2 (ja) | 2010-05-06 | 2011-05-04 | 複雑なアンプリコンの配列解析 |
| JP2017112502A Active JP6246971B2 (ja) | 2010-05-06 | 2017-06-07 | クロノタイププロファイルを用いた健康状態および疾患状態のモニタリング |
| JP2017219812A Active JP6533272B2 (ja) | 2010-05-06 | 2017-11-15 | クロノタイププロファイルを用いた健康状態および疾患状態のモニタリング |
Country Status (9)
| Country | Link |
|---|---|
| EP (4) | EP2567226B1 (enExample) |
| JP (4) | JP6158080B2 (enExample) |
| CN (2) | CN104673899A (enExample) |
| AU (1) | AU2011249041B2 (enExample) |
| CA (1) | CA2798431C (enExample) |
| DK (2) | DK3144673T3 (enExample) |
| ES (2) | ES2740802T3 (enExample) |
| SG (2) | SG10201503534RA (enExample) |
| WO (2) | WO2011139371A1 (enExample) |
Families Citing this family (75)
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| US8691510B2 (en) | 2008-11-07 | 2014-04-08 | Sequenta, Inc. | Sequence analysis of complex amplicons |
| US8748103B2 (en) | 2008-11-07 | 2014-06-10 | Sequenta, Inc. | Monitoring health and disease status using clonotype profiles |
| US8628927B2 (en) | 2008-11-07 | 2014-01-14 | Sequenta, Inc. | Monitoring health and disease status using clonotype profiles |
| US9506119B2 (en) | 2008-11-07 | 2016-11-29 | Adaptive Biotechnologies Corp. | Method of sequence determination using sequence tags |
| US9528160B2 (en) | 2008-11-07 | 2016-12-27 | Adaptive Biotechnolgies Corp. | Rare clonotypes and uses thereof |
| EP3699296A1 (en) | 2008-11-07 | 2020-08-26 | Adaptive Biotechnologies Corporation | Methods of monitoring conditions by sequence analysis |
| US9394567B2 (en) | 2008-11-07 | 2016-07-19 | Adaptive Biotechnologies Corporation | Detection and quantification of sample contamination in immune repertoire analysis |
| US9365901B2 (en) | 2008-11-07 | 2016-06-14 | Adaptive Biotechnologies Corp. | Monitoring immunoglobulin heavy chain evolution in B-cell acute lymphoblastic leukemia |
| HUE029424T2 (en) | 2009-01-15 | 2017-02-28 | Adaptive Biotechnologies Corp | Adaptive immunity profiling and a method for producing monoclonal antibodies |
| RU2014144463A (ru) | 2009-06-25 | 2015-06-20 | Фред Хатчинсон Кансэр Рисёч Сентер | Способ измерения адаптивного иммунитета |
| US9043160B1 (en) | 2009-11-09 | 2015-05-26 | Sequenta, Inc. | Method of determining clonotypes and clonotype profiles |
| US20140057799A1 (en) | 2010-12-16 | 2014-02-27 | Gigagen | System and Methods for Massively Parallel Analysis of Nucleic Acids in Single Cells |
| JP6054303B2 (ja) | 2010-12-30 | 2016-12-27 | ファウンデーション メディシン インコーポレイテッドＦｏｕｎｄａｔｉｏｎ Ｍｅｄｉｃｉｎｅ， Ｉｎｃ． | 腫瘍試料の多重遺伝子分析の最適化 |
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| EP2788509B1 (en) * | 2011-12-09 | 2018-07-11 | Adaptive Biotechnologies Corporation | Diagnosis of lymphoid malignancies and minimal residual disease detection |
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| SG11201406538VA (en) * | 2012-04-13 | 2014-11-27 | Sequenta Inc | Detection and quantitation of sample contamination in immune repertoire analysis |
| PT2831276T (pt) | 2012-05-08 | 2016-07-26 | Adaptive Biotechnologies Corp | Composições e método para medição e calibração do viés de amplificação em reações pcr multiplex |
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| WO2013188831A1 (en) * | 2012-06-15 | 2013-12-19 | Adaptive Biotechnologies Corporation | Uniquely tagged rearranged adaptive immune receptor genes in a complex gene set |
| EP2882870A4 (en) * | 2012-08-10 | 2016-03-16 | Sequenta Inc | HIGHLY SENSITIVE DETECTION OF MUTATIONS BY SEQUENCE TAGS |
| ES2660027T3 (es) | 2012-10-01 | 2018-03-20 | Adaptive Biotechnologies Corporation | Evaluación de la inmunocompetencia por la diversidad de los receptores de inmunidad adaptativa y caracterización de la clonalidad |
| CA2888514A1 (en) * | 2012-10-19 | 2014-04-24 | Sequenta, Inc. | Monitoring clonotypes of plasma cell proliferative disorders in peripheral blood |
| CA2888524A1 (en) * | 2012-10-22 | 2014-05-01 | Sequenta, Inc. | Monitoring mantle cell lymphoma clonotypes in peripheral blood after immunotransplant |
| CN105164277B (zh) * | 2013-02-11 | 2021-05-28 | Cb生物技术公司 | 用于评估免疫组库的方法 |
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| SG11201506991VA (en) * | 2013-03-15 | 2015-10-29 | Adaptive Biotechnologies Corp | Uniquely tagged rearranged adaptive immune receptor genes in a complex gene set |
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| US9708657B2 (en) | 2013-07-01 | 2017-07-18 | Adaptive Biotechnologies Corp. | Method for generating clonotype profiles using sequence tags |
| JP6164759B2 (ja) * | 2013-11-21 | 2017-07-19 | Ｒｅｐｅｒｔｏｉｒｅ Ｇｅｎｅｓｉｓ株式会社 | Ｔ細胞受容体およびｂ細胞受容体レパトアの解析システムならびにその治療および診断への利用 |
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| US10066265B2 (en) | 2014-04-01 | 2018-09-04 | Adaptive Biotechnologies Corp. | Determining antigen-specific t-cells |
| EP3132059B1 (en) | 2014-04-17 | 2020-01-08 | Adaptive Biotechnologies Corporation | Quantification of adaptive immune cell genomes in a complex mixture of cells |
| US10202640B2 (en) | 2014-05-07 | 2019-02-12 | The Board Of Trustees Of The Leland Stanford Junior University | Single cell analysis of T cells using high-throughput multiplex amplification and deep sequencing |
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| EP3715455A1 (en) | 2014-10-29 | 2020-09-30 | Adaptive Biotechnologies Corp. | Highly-multiplexed simultaneous detection of nucleic acids encoding paired adaptive immune receptor heterodimers from many samples |
| US10246701B2 (en) | 2014-11-14 | 2019-04-02 | Adaptive Biotechnologies Corp. | Multiplexed digital quantitation of rearranged lymphoid receptors in a complex mixture |
| US11066705B2 (en) | 2014-11-25 | 2021-07-20 | Adaptive Biotechnologies Corporation | Characterization of adaptive immune response to vaccination or infection using immune repertoire sequencing |
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