JP2013508329A - 心血管状態の薬理ゲノミクス治療のための方法およびシステム - Google Patents
心血管状態の薬理ゲノミクス治療のための方法およびシステム Download PDFInfo
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Abstract
【選択図】なし
Description
本開示は、その各開示全体が参照により本明細書に組み込まれている、2009年10月19日出願の「心血管状態の薬理ゲノミクス治療のための方法およびシステム」と題された米国仮特許出願S/N61/253020号および2009年11月25日出願の「心血管状態の薬理ゲノミクス治療のための方法およびシステム」と題された欧州特許出願S/N09177111.3号に関連し、その優先権を主張する。
式中、記号
Rは、未置換もしくは置換3−フリルまたは4−ピリダジニル基であり;
R1は、水素;メチル;エチルまたはOHもしくはNR5R6により置換されたn−プロピルであり;
R2は、水素である、またはR3と共にオキシラン環の結合であり;
R3は、水素である、またはR2と共にオキシラン環の結合であり;
R4は、水素;メチル;C2〜C6アルキルまたはC3〜C6アルケニルまたはC2〜C6アシルであり、これらのアルキル、アルケニルおよびアシル基は、未置換である、あるいは第四級アンモニウム基または1個もしくは複数のOR7、NR8R9、ホルミル、アミジノ、グアニジノイミノにより、またはNR8R9およびヒドロキシにより置換されており;
R5、R6は、独立に、水素;メチル;未置換または1個のNR10R11もしくはNR10R11およびヒドロキシにより置換されたC2〜C6アルキルである、またはR5およびR6は、窒素原子と共に、任意選択により、酸素または硫黄または窒素から選択される別のヘテロ原子を含む、未置換もしくは置換の飽和または不飽和ペンタ−あるいはヘキサ−モノ複素環を形成し;
R7は、水素、メチルまたはC2〜C4アルキルであり、このアルキルは、未置換である、あるいは1個もしくは複数のNR10R11により、またはNR10R11およびヒドロキシにより置換されており;
R8、R9は、独立に、水素;メチル;C2〜C6アルキルまたはC3〜C6アルケニルであり、これらのアルキルおよびアルケニル基は、未置換である、または1個もしくは複数のNR10R11またはNR10R11およびヒドロキシにより置換されている、またはR8およびR9は、窒素原子と共に、任意選択により、酸素または硫黄または窒素から選択される別のヘテロ原子を含む、未置換もしくは置換の飽和または不飽和ペンタ−あるいはヘキサ−モノ複素環を形成し、またはR8は水素でありR9はアミジノであり;
R10、R11は、独立に、水素、C1〜C6アルキルであり、またはR10およびR11は、窒素原子と共に、飽和もしくは不飽和ペンタ−またはヘキサ−モノ複素環を形成する。
a)高血圧を患う個体から核酸サンプルを得るステップと;
b)前記核酸サンプル中の、本明細書に記載のコアSNPからなる群から選択される多型の1つまたは複数の存在を決定するステップと;
c)薬学的活性量のロスタフロキシンを、本明細書に記載のコアSNPからなる群から選択される少なくとも1つの多型を有することが示された患者に投与するステップと
により行うことができる。
実施例
表現型=SNP+治療+SNP*治療相互
にしたがって、解析した。
表現型=SNP+治療+SNP*治療
として関連を評価し、ここでは、主作用「治療」は、遺伝成分を考慮することなく、臨床試験それ自体を検定することに相当するので、解析の重点はSNP*治療成分に、すなわち、主作用よりもむしろ相互作用にあった。主作用「SNP」は、治療によって誘導される修正を考慮することなく、血圧の変動に影響を及ぼすSNPを探す。相互作用効果(G*T)のみが、どのSNP(G=遺伝子)が、活性薬物またはプラセボのいずれかを投与された被験体におけるSBPに影響を及ぼすかを評価する(T=治療)。
実施例1:コアSNPは、ロスタフロキシンに対する個体の応答に影響を及ぼす
実施例2:コアSNPを含む遺伝子プロファイルは、ロスタフロキシンに対する個体応答に影響を及ぼす。
実施例3:関連SNPと共にコアSNPを含む遺伝子プロファイルはロスタフロキシンに対する応答に影響を及ぼす
実施例4:ロスタフロキシンに対する応答に影響を及ぼす関連SNP:CAND1遺伝子
実施例5:ロスタフロキシンに対する応答に影響を及ぼす関連SNP:CAND2遺伝子
実施例6:ロスタフロキシンに対する応答に影響を及ぼす関連SNP:GWS遺伝子
たとえプロファイル4、8および9に含まれるDNA変異がレスポンダー患者の予測に強力な遺伝的力を有するとしても、それらは、最良の識別能力を有する全ての遺伝的変異性を消耗しない。連鎖不平衝の概念によると、DNA変異(タグSNP)は、タグSNPに照らしてみて、同様にまたは類似して変異を分類することができる可変数のプロキシSNPにより一般的に表すことができる。そのため、いくつかの追加の遺伝的変異が、本明細書に記載の方法およびシステムの範囲に含まれる。ロスタフロキシンの生物活性に影響を及ぼすSNPとの連鎖不平衝における代表的な遺伝的変異を表13に列挙する。
実施例8:コアSNPおよびロスタフロキシンに対する応答に影響を及ぼす追加のSNPに関する配列情報
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Claims (42)
- rs2345088、rs16877182、rs16893522、rs2461911、rs5013093およびrs12513375からなる群から選択される少なくとも1つの多型、ならびに/あるいはそれらとの連鎖不平衝における遺伝的変異の保有者となるよう選択された個体の心血管状態の治療または予防に使用するためのロスタフロキシン。
- 少なくとも1つの多型が、rs2345088についてはヌクレオチドCまたはT、rs16877182についてはヌクレオチドCまたはT、rs16893522についてはヌクレオチドGまたはA、rs2461911についてはヌクレオチドGまたはA、rs5013093についてはヌクレオチドCまたはT、およびrs12513375についてはヌクレオチドTまたはGからなる群から選択される、請求項1に記載のロスタフロキシン。
- 前記個体が、rs2345088については遺伝子型TTまたは遺伝子型1、rs16877182については遺伝子型C/Tまたは遺伝子型2、rs16893522については遺伝子型AAまたは遺伝子型1、rs2461911については遺伝子型AAまたは遺伝子型1、rs5013093については遺伝子型TTまたは遺伝子型1、およびrs12513375については遺伝子型TTまたは遺伝子型1からなる群から選択される少なくとも1つの遺伝子型の保有者となるよう選択された、請求項1または2に記載のロスタフロキシン。
- 前記個体が、少なくとも1つのCAND1遺伝子、CAND2遺伝子および/またはGWS遺伝子における多型の保有者となるよう選択された、請求項1から3のいずれか一項に記載のロスタフロキシン。
- 前記個体が、ADD1、ADD2、ADD3、CYP11A1、HSD3B1、LSS、ABCB/MDR1およびSLCO4C1からなる群から選択される少なくとも1つの遺伝子における少なくとも1つの多型の保有者にもなるよう選択された、請求項4に記載のロスタフロキシン。
- 前記個体が、rs4961、rs4984、rs3731566、rs914247およびrs1045642からなる群から選択される少なくとも1つの一塩基多型ならびに/あるいはそれらとの連鎖不平衝における遺伝的変異の保有者となるよう選択された、請求項1から5のいずれか一項に記載のロスタフロキシン。
- 前記個体が、rs4961についてはGT、rs4984についてはCT、rs3731566についてはAG、rs914247についてはGAおよびrs1045642についてはTCからなる群から選択される少なくとも1つの遺伝子型の保有者となるよう選択された、請求項1から6のいずれか一項に記載のロスタフロキシン。
- 前記個体が、rs914247について遺伝子型AAの保有者となるよう選択された、請求項1から7のいずれか一項に記載のロスタフロキシン。
- 前記個体が、rs242093、rs1996396、rs10503806、rs13251780、rs17430706、rs10102024、rs526302、rs544104、rs3102087、rs5183、rs3772627、rs2276736、rs2131127、rs3741559、rs2217342、rs10927888、rs6604909、rs945403、rs7117314、rs10790212、rs11216598、rs910682、rs13218316、rs4309483、rs13280307、rs4739037、rs17596774、rs2728108、rs17786456、rs7696304、rs2725222、rs17199565、rs2758152、rs1057293、rs16960712、rs759359、rs404214、rs1005213、rs17025453、rs2110923、rs1428571、rs435404、rs12908787、rs11647727、rs880054およびrs11064584からなる群から選択される少なくとも1つの一塩基多型、ならびに/あるいはそれらとの連鎖不平衝における遺伝的変異の保有者となるよう選択された、請求項1から8のいずれか一項に記載のロスタフロキシン。
- 前記個体が、rs12996186、rs9893372、rs7216331、rs7521668、rs188334、rs4998662、rs16893522、rs6457110、rs3893464、rs2517718、rs1362126、rs5013093、rs2345088、rs6718282、rs721207、rs2555500、rs2461911、rs8179654、rs1901139、rs2427832、rs9361863、rs1998394、ga001619、rs2275531、rs748140、rs4710592、rs2743951、rs10159569、rs3087816、rs10493940、rs16877182、rs2326912、rs1110446、rs12513375およびrs17414954からなる群から選択される少なくとも1つの一塩基多型、ならびに/あるいはそれらとの連鎖不平衝における遺伝的変異の保有者となるよう選択された、請求項1から9のいずれか一項に記載のロスタフロキシン。
- 前記個体が、rs4961、rs4984、rs10923835、rs947130、rs914247、rs1045642、rs880054、rs10502933、rs2131127、rs4309483およびrs4739037からなる群から選択される少なくとも1つの一塩基多型の保有者となるよう選択された、請求項1から10のいずれか一項に記載のロスタフロキシン。
- 前記個体が、rs1045642、rs10923835、rs914247、rs4961、rs947130、rs4309483、rs2131127、rs10502933およびrs880054(プロファイル8)からなる群から選択される少なくとも1つの一塩基多型の保有者となるよう選択された、請求項1から10のいずれか一項に記載のロスタフロキシン。
- 前記個体が、rs1045642、rs10923835、rs914247、rs947130、rs4739037、rs43909483、rs4984、rs10502933、rs880054(プロファイル9)からなる群から選択される少なくとも1つの一塩基多型の保有者となるよう選択された、請求項1から10のいずれか一項に記載のロスタフロキシン。
- 前記心血管状態が、高血圧および/またはそれに関連する状態である、請求項1から13のいずれか一項に記載のロスタフロキシン。
- 前記心血管状態が、心肥大、心不全、心不全、心虚血、血管抵抗増加、血管反応性増加、血管硬化、血管厚さ増加、腎肥大、腎不全、糸球体硬化症、タンパク尿、多発性嚢胞腎、網膜障害、脳血管障害、脳血管損傷、脳卒中、メニエール症候群、認知障害、双極性障害の少なくとも1つである、請求項14に記載のロスタフロキシン。
- rs2345088、rs16877182、rs16893522、rs2461911、rs5013093およびrs12513375の少なくとも1つ、ならびに/あるいはそれらとの連鎖不平衝における遺伝的変異を含む遺伝子型を有するよう選択された個体を治療するために投与される、0.005mg/日〜5mg/日の用量の医薬品として使用するためのロスタフロキシン。
- ロスタフロキシンによる治療が、ウアバイン高血圧効果の選択的阻害、ウアバインにより引き起こされるNa−KポンプおよびSrcにおける変化の正常化、内因性ウアバインレベルの付随する増加とNa−KポンプおよびSrcにおける変化により持続される高血圧の形態の正常化からなる群から選択される少なくとも1つの生物活性を誘発することを目指している、請求項16に記載のロスタフロキシン。
- ロスタフロキシンによる治療が、アデュシンまたは内因性ウアバインの合成および輸送に関与する他の酵素をコードする遺伝子の遺伝的変異に関連する高血圧効果の選択的拮抗作用、アデュシン遺伝的変異により引き起こされるNa−KポンプおよびSrcにおける変化の正常化、ならびにアデュシン遺伝的変異とNa−KポンプおよびSrcにおける変化の付随する効果により持続される高血圧の形態の正常化からなる群から選択される少なくとも1つの生物活性を誘発することを目指している、請求項16または17に記載のロスタフロキシン。
- 前記用量が、0.05mg/日〜0.15mg/日であり、前記個体へのロスタフロキシンの投与または処方が、約23mmHgの平均的血圧低下をもたらす、請求項16から18のいずれか一項に記載のロスタフロキシン。
- 前記用量が、1.5mg/日〜5.0mg/日であり、前記個体へのロスタフロキシンの投与または処方が、約15mmHgの平均的血圧低下をもたらす、請求項16から18のいずれか一項に記載のロスタフロキシン。
- 前記用量が、0.05mg/日〜1.5mg/日であり、前記個体へのロスタフロキシンの投与または処方が、平均的夜間血圧低下をもたらす、請求項16から18のいずれか一項に記載のロスタフロキシン。
- 前記個体が、少なくとも1つのCAND1遺伝子、CAND2遺伝子および/またはGWS遺伝子における多型の保有者にもなるよう選択され、前記個体へのロスタフロキシンの投与または処方が、約8〜約22.5mmHgに及ぶ平均的低下をもたらす、請求項16から18のいずれか一項に記載のロスタフロキシン。
- 少なくとも1つのCAND1遺伝子が、ADD1、ADD2、ADD3、LSS、MDR1、HSD3B1、CYP11A1およびSLCO4C1からなる群から選択される、請求項22に記載のロスタフロキシン。
- 少なくとも1つのCAND2遺伝子が、ACTN1、ADRA1A、AGTR1、AQP2、ATP1A3、CLCNKA、CLCNKB、FXYD2、FXYD6、FYN、NEDD4L、NKAIN3、PKD1、PKD2、SCNN1B、SGK1、SLC12A1、SLC8A1、TJP1、UMODおよびWNK1からなる群から選択される、請求項22または23に記載のロスタフロキシン。
- 少なくとも1つのGWS遺伝子が、ARL5A、ATP2A3、COX10、DPH5、FAIM3、FAM46A、HCG9、HLA−A、HLA−F、HLA−G、KCNS3、LOC131691、LOC389174、LOC389970、LOC642727、LOC644192、LOC649458、LOC728360、LOC728316、PIGR、RCADH5、RP3−377H14.5、SH3PXD2A、SLC30A7、THSD7A、TMEM200A、TRIM31、TTC29およびVCAM1からなる群から選択される、請求項22から24のいずれか一項に記載のロスタフロキシン。
- 少なくとも1つのCAND1遺伝子、CAND2遺伝子およびGWS遺伝子が、MDSR2、HSD18、LSS2、HSD19、ADD2、WNKからなる群から選択される、請求項23に記載のロスタフロキシン。
- 少なくとも1つのCAND1遺伝子、CAND2遺伝子および/またはGWS遺伝子中の前記多型が、一塩基多型である、請求項22から26のいずれか一項に記載のロスタフロキシン。
- 前記用量が、経口、静脈内、筋肉内、動脈内、脊髄内、髄腔内、心室内、経皮内適用、皮下、腹腔内、鼻腔内、経腸、局所、舌下、直腸手段、または外科手術後の患部組織に局所的に投与される、請求項16から27のいずれか一項に記載のロスタフロキシン。
- 個体の単離DNAサンプル中で、配列番号1、配列番号3、配列番号5、配列番号7、配列番号9および配列番号11のヌクレオチド配列のいずれか1つにおける一塩基多型を検出するステップを含む、ロスタフロキシンに対する改善された応答を有する個体を同定する方法であって、前記SNPの存在は、前記個体中のロスタフロキシンに対する改善された応答と相関する方法。
- 前記検出される一塩基多型が、rs2345088、rs16877182、rs16893522、rs2461911、rs5013093およびrs12513375からなる群から選択される、請求項29に記載の方法。
- 配列番号2、配列番号4、配列番号6、配列番号8、配列番号10および配列番号12からなる群から選択される少なくとも1つの配列、またはそれらの相補配列を含む、単離核酸分子。
- 配列番号26、配列番号28、配列番号30、配列番号32、配列番号34、配列番号36、配列番号38、配列番号40、配列番号42、配列番号44および配列番号46からなる群から選択される少なくとも1つの配列、またはそれらの相補配列を含む、単離核酸分子。
- 配列番号1、配列番号3、配列番号5、配列番号7、配列番号9および配列番号11のヌクレオチド配列のいずれか1つにおける一塩基多型を含む核酸分子と特異的にハイブリダイズする単離ポリヌクレオチドと;
緩衝液と;
前記核酸中の一塩基多型を検出するために前記単離ポリヌクレオチドと組み合わせて使用するのに適した酵素と
を含む、核酸中の一塩基多型を検出するシステム。 - 前記単離ポリヌクレオチドが、配列番号2、配列番号4、配列番号6、配列番号8、配列番号10および配列番号12からなる群から選択される少なくとも1つの配列、またはそれらのフラグメントを含む、請求項33に記載のシステム。
- 配列番号25、配列番号27、配列番号29、配列番号31、配列番号33、配列番号35、配列番号37、配列番号39、配列番号41、配列番号43および配列番号45のヌクレオチド配列のいずれか1つにおける一塩基多型を含む核酸分子と特異的にハイブリダイズする単離ポリヌクレオチドをさらに含む、請求項33または34に記載のシステム。
- 前記単離ポリヌクレオチドが、配列番号26、配列番号28、配列番号30、配列番号32、配列番号34、配列番号36、配列番号38、配列番号40、配列番号42、配列番号44および配列番号46からなる群から選択される少なくとも1つの配列、またはそれらのフラグメントを含む、請求項35に記載のシステム。
- rs2345088、rs16877182、rs16893522、rs2461911、rs5013093およびrs12513375からなる群から選択される少なくとも1つの多型、ならびに/あるいはそれらとの連鎖不平衝における遺伝的変異のためのプローブと;
0.005mg〜5mg/日、特に0.05〜0.5mg/日の用量のロスタフロキシンおよび薬学的に許容される媒体を含む医薬組成物と
を含む、個体のためのロスタフロキシン治療を評価するシステム。 - 前記プローブが、配列番号2、配列番号4、配列番号6、配列番号8、配列番号10および配列番号12からなる群から選択される少なくとも1つの単離ポリヌクレオチド、または配列番号2、配列番号4、配列番号6、配列番号8、配列番号10もしくは配列番号12と相補的な配列と特異的にハイブリダイズすることができるそれらのフラグメントを含む、請求項37に記載のシステム。
- rs4961、rs4984、rs10923835、rs947130、rs914247、rs1045642、rs880054、rs10502933、rs2131127、rs4309483およびrs4739037からなる群から選択される少なくとも1つの多型のためのプローブをさらに含む、請求項37または38に記載のシステム。
- 前記プローブが、配列番号26、配列番号28、配列番号30、配列番号32、配列番号34、配列番号36、配列番号38、配列番号40、配列番号42、配列番号44および配列番号46からなる群から選択される少なくとも1つの単離ポリヌクレオチド、または配列番号26、配列番号28、配列番号30、配列番号32、配列番号34、配列番号36、配列番号38、配列番号40、配列番号42、配列番号44もしくは配列番号46と相補的な配列と特異的にハイブリダイズすることができるそれらのフラグメントを含む、請求項39に記載のシステム。
- 前記プローブが、配列番号35〜配列番号58からなる群から選択される配列を有する、請求項37から40のいずれか一項に記載のシステム。
- 配列番号1、配列番号3、配列番号5、配列番号7、配列番号9および配列番号11のヌクレオチド配列のいずれか1つにおける一塩基多型を含む核酸分子と特異的にハイブリダイズする単離ポリヌクレオチドと;
緩衝液と;
前記核酸中の一塩基多型を検出するために前記単離ポリヌクレオチドと組み合わせて使用するのに適した酵素と
を含む、KCNS3、THSD7A、FAM46A、LOC389970、HLA−GおよびTTC29からなる群から選択される遺伝子の遺伝子間または遺伝子内領域中の一塩基多型を検出するシステム。
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