IL287528B2 - תכשיר קושר רב–ערכי לניתוח חומצת גרעין - Google Patents
תכשיר קושר רב–ערכי לניתוח חומצת גרעיןInfo
- Publication number
- IL287528B2 IL287528B2 IL287528A IL28752821A IL287528B2 IL 287528 B2 IL287528 B2 IL 287528B2 IL 287528 A IL287528 A IL 287528A IL 28752821 A IL28752821 A IL 28752821A IL 287528 B2 IL287528 B2 IL 287528B2
- Authority
- IL
- Israel
- Prior art keywords
- nucleotide
- nucleic acid
- polymer
- binding
- target nucleic
- Prior art date
Links
- 150000007523 nucleic acids Chemical class 0.000 title claims description 399
- 102000039446 nucleic acids Human genes 0.000 title claims description 332
- 108020004707 nucleic acids Proteins 0.000 title claims description 332
- 238000009739 binding Methods 0.000 title claims description 304
- 230000027455 binding Effects 0.000 title claims description 303
- 239000000203 mixture Substances 0.000 title claims description 249
- 238000004458 analytical method Methods 0.000 title description 15
- 239000002773 nucleotide Substances 0.000 claims description 603
- 125000003729 nucleotide group Chemical group 0.000 claims description 475
- 238000000034 method Methods 0.000 claims description 158
- 229920000642 polymer Polymers 0.000 claims description 103
- 238000003199 nucleic acid amplification method Methods 0.000 claims description 71
- 230000003321 amplification Effects 0.000 claims description 70
- 230000000295 complement effect Effects 0.000 claims description 65
- 239000000872 buffer Substances 0.000 claims description 51
- 108091028043 Nucleic acid sequence Proteins 0.000 claims description 46
- 230000002688 persistence Effects 0.000 claims description 37
- 108020004414 DNA Proteins 0.000 claims description 32
- 238000001514 detection method Methods 0.000 claims description 32
- YBJHBAHKTGYVGT-ZKWXMUAHSA-N (+)-Biotin Chemical compound N1C(=O)N[C@@H]2[C@H](CCCCC(=O)O)SC[C@@H]21 YBJHBAHKTGYVGT-ZKWXMUAHSA-N 0.000 claims description 26
- 238000010494 dissociation reaction Methods 0.000 claims description 23
- 230000005593 dissociations Effects 0.000 claims description 23
- 150000002500 ions Chemical class 0.000 claims description 18
- 239000000412 dendrimer Substances 0.000 claims description 16
- 229920000736 dendritic polymer Polymers 0.000 claims description 16
- 238000002073 fluorescence micrograph Methods 0.000 claims description 15
- 239000011616 biotin Substances 0.000 claims description 13
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- JLVVSXFLKOJNIY-UHFFFAOYSA-N Magnesium ion Chemical compound [Mg+2] JLVVSXFLKOJNIY-UHFFFAOYSA-N 0.000 claims description 7
- 238000005259 measurement Methods 0.000 claims description 7
- 229910001427 strontium ion Inorganic materials 0.000 claims description 7
- 238000007385 chemical modification Methods 0.000 claims description 6
- 229910001425 magnesium ion Inorganic materials 0.000 claims description 6
- 241001264766 Callistemon Species 0.000 claims description 5
- BHPQYMZQTOCNFJ-UHFFFAOYSA-N Calcium cation Chemical compound [Ca+2] BHPQYMZQTOCNFJ-UHFFFAOYSA-N 0.000 claims description 4
- 229910001424 calcium ion Inorganic materials 0.000 claims description 4
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- 238000010348 incorporation Methods 0.000 description 152
- 238000012163 sequencing technique Methods 0.000 description 116
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- QGKMIGUHVLGJBR-UHFFFAOYSA-M (4z)-1-(3-methylbutyl)-4-[[1-(3-methylbutyl)quinolin-1-ium-4-yl]methylidene]quinoline;iodide Chemical compound [I-].C12=CC=CC=C2N(CCC(C)C)C=CC1=CC1=CC=[N+](CCC(C)C)C2=CC=CC=C12 QGKMIGUHVLGJBR-UHFFFAOYSA-M 0.000 description 14
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- LOKCTEFSRHRXRJ-UHFFFAOYSA-I dipotassium trisodium dihydrogen phosphate hydrogen phosphate dichloride Chemical compound P(=O)(O)(O)[O-].[K+].P(=O)(O)([O-])[O-].[Na+].[Na+].[Cl-].[K+].[Cl-].[Na+] LOKCTEFSRHRXRJ-UHFFFAOYSA-I 0.000 description 7
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Classifications
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
- C12Q1/6874—Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2521/00—Reaction characterised by the enzymatic activity
- C12Q2521/10—Nucleotidyl transfering
- C12Q2521/101—DNA polymerase
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2537/00—Reactions characterised by the reaction format or use of a specific feature
- C12Q2537/10—Reactions characterised by the reaction format or use of a specific feature the purpose or use of
- C12Q2537/157—A reaction step characterised by the number of molecules incorporated or released
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2563/00—Nucleic acid detection characterized by the use of physical, structural and functional properties
- C12Q2563/107—Nucleic acid detection characterized by the use of physical, structural and functional properties fluorescence
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2563/00—Nucleic acid detection characterized by the use of physical, structural and functional properties
- C12Q2563/149—Particles, e.g. beads
Landscapes
- Life Sciences & Earth Sciences (AREA)
- Chemical & Material Sciences (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Organic Chemistry (AREA)
- Zoology (AREA)
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- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Apparatus Associated With Microorganisms And Enzymes (AREA)
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| US201962897172P | 2019-09-06 | 2019-09-06 | |
| US16/579,794 US10768173B1 (en) | 2019-09-06 | 2019-09-23 | Multivalent binding composition for nucleic acid analysis |
| PCT/US2020/034409 WO2020243017A1 (en) | 2019-05-24 | 2020-05-22 | Multivalent binding composition for nucleic acid analysis |
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| IL287528A IL287528A (he) | 2021-12-01 |
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| SG (1) | SG11202112049VA (he) |
| WO (1) | WO2020243017A1 (he) |
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| CN117680210A (zh) | 2018-12-07 | 2024-03-12 | 元素生物科学公司 | 流动池装置、匣盒和系统 |
| US11287422B2 (en) | 2019-09-23 | 2022-03-29 | Element Biosciences, Inc. | Multivalent binding composition for nucleic acid analysis |
| US11060138B1 (en) | 2020-01-17 | 2021-07-13 | Element Biosciences, Inc. | Nucleic acid sequencing systems |
| US11198121B1 (en) | 2020-06-10 | 2021-12-14 | Element Biosciences, Inc. | Flow cell systems and devices |
| EP4237581A1 (en) | 2020-10-30 | 2023-09-06 | Element Biosciences, Inc. | Reagents for massively parallel nucleic acid sequencing |
| KR20230153706A (ko) | 2022-04-29 | 2023-11-07 | 연세대학교 산학협력단 | 핵산의 검출 또는 분리용 조성물 및 이를 이용한 핵산의 검출 또는 분리 방법 |
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| US7462452B2 (en) * | 2004-04-30 | 2008-12-09 | Pacific Biosciences Of California, Inc. | Field-switch sequencing |
| WO2006097320A2 (de) * | 2005-03-17 | 2006-09-21 | Genovoxx Gmbh | Makromolekulare nukleotidverbindungen und methoden zu deren anwendung |
| WO2009073201A2 (en) * | 2007-12-04 | 2009-06-11 | Pacific Biosciences Of California, Inc. | Alternate labeling strategies for single molecule sequencing |
| US8906612B2 (en) * | 2010-08-25 | 2014-12-09 | Pacific Biosciences Of California, Inc. | Scaffold-based polymerase enzyme substrates |
| US20150086981A1 (en) * | 2011-05-04 | 2015-03-26 | Genovoxx Gmbh | Nucleoside-triphosphate conjugate and methods for the use thereof |
| WO2013123258A1 (en) * | 2012-02-15 | 2013-08-22 | Pacific Biosciences Of California, Inc. | Polymerase enzyme substrates with protein shield |
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| KR20210144929A (ko) | 2021-11-30 |
| EP3947731A4 (en) | 2022-06-29 |
| WO2020243017A1 (en) | 2020-12-03 |
| GB2597398A (en) | 2022-01-26 |
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