EP2859123A4 - Procédé de détermination de séquence à l'aide d'étiquettes de séquence - Google Patents
Procédé de détermination de séquence à l'aide d'étiquettes de séquenceInfo
- Publication number
- EP2859123A4 EP2859123A4 EP13804085.2A EP13804085A EP2859123A4 EP 2859123 A4 EP2859123 A4 EP 2859123A4 EP 13804085 A EP13804085 A EP 13804085A EP 2859123 A4 EP2859123 A4 EP 2859123A4
- Authority
- EP
- European Patent Office
- Prior art keywords
- sequence
- determination
- tags
- sequence tags
- sequence determination
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Withdrawn
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
- C12Q1/6874—Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
Landscapes
- Life Sciences & Earth Sciences (AREA)
- Chemical & Material Sciences (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Organic Chemistry (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Microbiology (AREA)
- Biochemistry (AREA)
- Biotechnology (AREA)
- Molecular Biology (AREA)
- Biophysics (AREA)
- Analytical Chemistry (AREA)
- Physics & Mathematics (AREA)
- Immunology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Peptides Or Proteins (AREA)
Applications Claiming Priority (6)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US201261658317P | 2012-06-11 | 2012-06-11 | |
US201261738277P | 2012-12-17 | 2012-12-17 | |
US201361776647P | 2013-03-11 | 2013-03-11 | |
US13/835,093 US9506119B2 (en) | 2008-11-07 | 2013-03-15 | Method of sequence determination using sequence tags |
US201361829054P | 2013-05-30 | 2013-05-30 | |
PCT/US2013/045276 WO2013188471A2 (fr) | 2012-06-11 | 2013-06-11 | Procédé de détermination de séquence à l'aide d'étiquettes de séquence |
Publications (2)
Publication Number | Publication Date |
---|---|
EP2859123A2 EP2859123A2 (fr) | 2015-04-15 |
EP2859123A4 true EP2859123A4 (fr) | 2015-12-16 |
Family
ID=49758873
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
EP13804085.2A Withdrawn EP2859123A4 (fr) | 2012-06-11 | 2013-06-11 | Procédé de détermination de séquence à l'aide d'étiquettes de séquence |
Country Status (7)
Country | Link |
---|---|
EP (1) | EP2859123A4 (fr) |
JP (1) | JP2015519081A (fr) |
CN (1) | CN104520443A (fr) |
AU (1) | AU2013274366A1 (fr) |
CA (1) | CA2875542A1 (fr) |
SG (1) | SG11201407888RA (fr) |
WO (1) | WO2013188471A2 (fr) |
Families Citing this family (51)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US9506119B2 (en) | 2008-11-07 | 2016-11-29 | Adaptive Biotechnologies Corp. | Method of sequence determination using sequence tags |
US9394567B2 (en) | 2008-11-07 | 2016-07-19 | Adaptive Biotechnologies Corporation | Detection and quantification of sample contamination in immune repertoire analysis |
EP2364368B1 (fr) | 2008-11-07 | 2014-01-15 | Sequenta, Inc. | Procédés de surveillance de maladies par analyse de séquence |
US8748103B2 (en) | 2008-11-07 | 2014-06-10 | Sequenta, Inc. | Monitoring health and disease status using clonotype profiles |
US9528160B2 (en) | 2008-11-07 | 2016-12-27 | Adaptive Biotechnolgies Corp. | Rare clonotypes and uses thereof |
US9365901B2 (en) | 2008-11-07 | 2016-06-14 | Adaptive Biotechnologies Corp. | Monitoring immunoglobulin heavy chain evolution in B-cell acute lymphoblastic leukemia |
US8628927B2 (en) | 2008-11-07 | 2014-01-14 | Sequenta, Inc. | Monitoring health and disease status using clonotype profiles |
DK2387627T3 (en) | 2009-01-15 | 2016-07-04 | Adaptive Biotechnologies Corp | Adaptive immunity profiling and methods for producing monoclonal antibodies |
EP2446052B1 (fr) | 2009-06-25 | 2018-08-08 | Fred Hutchinson Cancer Research Center | Procédé de mesure de l'immunité adaptative |
US9043160B1 (en) | 2009-11-09 | 2015-05-26 | Sequenta, Inc. | Method of determining clonotypes and clonotype profiles |
US10385475B2 (en) | 2011-09-12 | 2019-08-20 | Adaptive Biotechnologies Corp. | Random array sequencing of low-complexity libraries |
US9279159B2 (en) | 2011-10-21 | 2016-03-08 | Adaptive Biotechnologies Corporation | Quantification of adaptive immune cell genomes in a complex mixture of cells |
CA2858070C (fr) | 2011-12-09 | 2018-07-10 | Adaptive Biotechnologies Corporation | Diagnostic des malignites lymphoides et detection de maladie residuelle minimale |
US9499865B2 (en) | 2011-12-13 | 2016-11-22 | Adaptive Biotechnologies Corp. | Detection and measurement of tissue-infiltrating lymphocytes |
DK2823060T3 (en) | 2012-03-05 | 2018-05-28 | Adaptive Biotechnologies Corp | Determination of associated immune receptor chains from frequency-matched subunits |
ES2582554T3 (es) | 2012-05-08 | 2016-09-13 | Adaptive Biotechnologies Corporation | Composiciones y método para medir y calibrar el sesgo de la amplificación en reacciones de PCR multiplexadas |
JP2015524282A (ja) * | 2012-08-10 | 2015-08-24 | シーケンタ インコーポレイテッド | 配列タグを用いた高感度突然変異検出 |
US20160040229A1 (en) | 2013-08-16 | 2016-02-11 | Guardant Health, Inc. | Systems and methods to detect rare mutations and copy number variation |
CA2883901C (fr) | 2012-09-04 | 2023-04-11 | Guardant Health, Inc. | Systemes et procedes pour detecter des mutations rares et une variation de nombre de copies |
US10876152B2 (en) | 2012-09-04 | 2020-12-29 | Guardant Health, Inc. | Systems and methods to detect rare mutations and copy number variation |
US11913065B2 (en) | 2012-09-04 | 2024-02-27 | Guardent Health, Inc. | Systems and methods to detect rare mutations and copy number variation |
DK2904111T3 (en) | 2012-10-01 | 2018-03-12 | Adaptive Biotechnologies Corp | Immune competence evaluation of adaptive immune receptor diversity and clonality characterization |
US9708657B2 (en) | 2013-07-01 | 2017-07-18 | Adaptive Biotechnologies Corp. | Method for generating clonotype profiles using sequence tags |
EP3524694B1 (fr) | 2013-12-28 | 2020-07-15 | Guardant Health, Inc. | Procédés et systèmes de détection de variants génétiques |
DE102014200446B3 (de) * | 2014-01-13 | 2015-01-08 | Technische Universität Dresden | Verfahren zur Dekonvolution Nukleinsäure enthaltender Substanzgemische |
AU2015227054A1 (en) | 2014-03-05 | 2016-09-22 | Adaptive Biotechnologies Corporation | Methods using randomer-containing synthetic molecules |
US10066265B2 (en) | 2014-04-01 | 2018-09-04 | Adaptive Biotechnologies Corp. | Determining antigen-specific t-cells |
EP3132059B1 (fr) | 2014-04-17 | 2020-01-08 | Adaptive Biotechnologies Corporation | Quantification de génomes de cellules de l'immunité acquise dans un mélange complexe de cellules |
ES2784343T3 (es) | 2014-10-29 | 2020-09-24 | Adaptive Biotechnologies Corp | Detección simultánea altamente multiplexada de ácidos nucleicos que codifican heterodímeros de receptores inmunes adaptativos emparejados de muchas muestras |
EP3018214B1 (fr) | 2014-11-05 | 2017-12-13 | Fundacion de Investigacion Hospital 12 de Octubre | Procédé pour quantifier le niveau de maladie résiduelle minimale chez un sujet |
US10246701B2 (en) | 2014-11-14 | 2019-04-02 | Adaptive Biotechnologies Corp. | Multiplexed digital quantitation of rearranged lymphoid receptors in a complex mixture |
AU2015353581A1 (en) | 2014-11-25 | 2017-06-15 | Adaptive Biotechnologies Corporation | Characterization of adaptive immune response to vaccination or infection using immune repertoire sequencing |
EP3262196B1 (fr) | 2015-02-24 | 2020-12-09 | Adaptive Biotechnologies Corp. | Méthode pour la détermination du statut hla à l'aide du séquençage du répertoire immunitaire |
EP3277294B1 (fr) | 2015-04-01 | 2024-05-15 | Adaptive Biotechnologies Corp. | Procédé d'identification des récepteurs de lymphocytes t spécifiques à compatibilité humaine pour une cible antigénique |
CN105095687B (zh) * | 2015-06-26 | 2018-10-26 | 南方科技大学 | 一种免疫组库数据分析方法及终端 |
WO2017013170A1 (fr) | 2015-07-22 | 2017-01-26 | F. Hoffmann-La Roche Ag | Identification d'épitopes antigéniques et séquences immunitaires reconnaissant les antigènes |
US10539564B2 (en) | 2015-07-22 | 2020-01-21 | Roche Sequencing Solutions, Inc. | Identification of antigen epitopes and immune sequences recognizing the antigens |
EP3387108B1 (fr) * | 2015-12-08 | 2022-05-25 | Quantapore, Inc. | Procédé de translocation d'acides nucléiques via des nanopores |
WO2017106768A1 (fr) | 2015-12-17 | 2017-06-22 | Guardant Health, Inc. | Procédés de détermination du nombre de copies du gène tumoral par analyse d'adn acellulaire |
US10428325B1 (en) | 2016-09-21 | 2019-10-01 | Adaptive Biotechnologies Corporation | Identification of antigen-specific B cell receptors |
CN107955831A (zh) * | 2016-10-13 | 2018-04-24 | 深圳华大基因研究院 | 用于淋巴细胞定量检测的标记物和淋巴细胞定量检测方法 |
CN106755410B (zh) * | 2016-12-23 | 2019-12-06 | 孙涛 | 一种基于高通量测序同时检测t细胞和b细胞免疫组库的方法 |
WO2018213235A1 (fr) * | 2017-05-16 | 2018-11-22 | Life Technologies Corporation | Procédés de compression de données de séquence d'acides nucléiques à étiquetage moléculaire |
CN110678559B (zh) * | 2017-08-31 | 2023-09-15 | 深圳华大智造科技股份有限公司 | 一种核酸探针以及一种核酸测序方法 |
EP3676399B1 (fr) | 2017-09-01 | 2022-05-11 | Life Technologies Corporation | Compositions et méthodes pour séquençage de répertoire immunologique |
CN110691854B (zh) * | 2017-10-25 | 2023-09-12 | 深圳华大生命科学研究院 | 一种核酸测序方法以及一种核酸测序试剂盒 |
US11254980B1 (en) | 2017-11-29 | 2022-02-22 | Adaptive Biotechnologies Corporation | Methods of profiling targeted polynucleotides while mitigating sequencing depth requirements |
CN111172258B (zh) * | 2020-02-24 | 2023-06-16 | 国家海洋环境监测中心 | 基于宏条形码技术的海洋浮游动物多样性的评价方法 |
WO2021191829A1 (fr) * | 2020-03-24 | 2021-09-30 | Angstrom Bio, Inc. | Dosages pour la détection d'agents pathogènes |
AU2022245323A1 (en) | 2021-03-24 | 2023-09-28 | Genentech, Inc. | Efficient tcr gene editing in t lymphocytes |
CN113355403A (zh) * | 2021-05-12 | 2021-09-07 | 邢迎春 | 一种利用环境dna技术检测鱼类物种多样性的方法 |
Citations (4)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US5846719A (en) * | 1994-10-13 | 1998-12-08 | Lynx Therapeutics, Inc. | Oligonucleotide tags for sorting and identification |
WO2009017678A2 (fr) * | 2007-07-26 | 2009-02-05 | Pacific Biosciences Of California, Inc. | Séquençage moléculaire redondant |
WO2012055929A1 (fr) * | 2010-10-26 | 2012-05-03 | Illumina, Inc. | Procédés de séquençage |
WO2013130512A2 (fr) * | 2012-02-27 | 2013-09-06 | The University Of North Carolina At Chapel Hill | Procédés et utilisations d'étiquettes moléculaires |
Family Cites Families (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US8691510B2 (en) * | 2008-11-07 | 2014-04-08 | Sequenta, Inc. | Sequence analysis of complex amplicons |
EP2364368B1 (fr) * | 2008-11-07 | 2014-01-15 | Sequenta, Inc. | Procédés de surveillance de maladies par analyse de séquence |
US8748103B2 (en) * | 2008-11-07 | 2014-06-10 | Sequenta, Inc. | Monitoring health and disease status using clonotype profiles |
-
2013
- 2013-06-11 EP EP13804085.2A patent/EP2859123A4/fr not_active Withdrawn
- 2013-06-11 SG SG11201407888RA patent/SG11201407888RA/en unknown
- 2013-06-11 CN CN201380042163.XA patent/CN104520443A/zh active Pending
- 2013-06-11 CA CA2875542A patent/CA2875542A1/fr not_active Abandoned
- 2013-06-11 JP JP2015517372A patent/JP2015519081A/ja active Pending
- 2013-06-11 AU AU2013274366A patent/AU2013274366A1/en not_active Abandoned
- 2013-06-11 WO PCT/US2013/045276 patent/WO2013188471A2/fr active Application Filing
Patent Citations (4)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US5846719A (en) * | 1994-10-13 | 1998-12-08 | Lynx Therapeutics, Inc. | Oligonucleotide tags for sorting and identification |
WO2009017678A2 (fr) * | 2007-07-26 | 2009-02-05 | Pacific Biosciences Of California, Inc. | Séquençage moléculaire redondant |
WO2012055929A1 (fr) * | 2010-10-26 | 2012-05-03 | Illumina, Inc. | Procédés de séquençage |
WO2013130512A2 (fr) * | 2012-02-27 | 2013-09-06 | The University Of North Carolina At Chapel Hill | Procédés et utilisations d'étiquettes moléculaires |
Non-Patent Citations (3)
Title |
---|
C. B. JABARA ET AL: "Accurate sampling and deep sequencing of the HIV-1 protease gene using a Primer ID", PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES, vol. 108, no. 50, 30 November 2011 (2011-11-30), pages 20166 - 20171, XP055201609, ISSN: 0027-8424, DOI: 10.1073/pnas.1110064108 * |
MEGAN MANION ET AL: "Reducing Error in Next Generation Sequencing Data with NextGENe Software's Condensation Tool", March 2009 (2009-03-01), pages 1 - 3, XP055226038, Retrieved from the Internet <URL:http://www.softgenetics.com/PDF/ReducingError_NextGenerationSequencing_AppNote.pdf> [retrieved on 20151105] * |
MILLER JASON R ET AL: "Assembly algorithms for next-generation sequencing data", GENOMICS, ACADEMIC PRESS, SAN DIEGO, US, vol. 95, no. 6, 6 March 2010 (2010-03-06), pages 315 - 327, XP009165741, ISSN: 0888-7543 * |
Also Published As
Publication number | Publication date |
---|---|
CN104520443A (zh) | 2015-04-15 |
WO2013188471A3 (fr) | 2014-04-03 |
JP2015519081A (ja) | 2015-07-09 |
WO2013188471A2 (fr) | 2013-12-19 |
CA2875542A1 (fr) | 2013-12-19 |
EP2859123A2 (fr) | 2015-04-15 |
AU2013274366A1 (en) | 2015-01-22 |
SG11201407888RA (en) | 2014-12-30 |
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Legal Events
Date | Code | Title | Description |
---|---|---|---|
PUAI | Public reference made under article 153(3) epc to a published international application that has entered the european phase |
Free format text: ORIGINAL CODE: 0009012 |
|
17P | Request for examination filed |
Effective date: 20141211 |
|
AK | Designated contracting states |
Kind code of ref document: A2 Designated state(s): AL AT BE BG CH CY CZ DE DK EE ES FI FR GB GR HR HU IE IS IT LI LT LU LV MC MK MT NL NO PL PT RO RS SE SI SK SM TR |
|
AX | Request for extension of the european patent |
Extension state: BA ME |
|
DAX | Request for extension of the european patent (deleted) | ||
A4 | Supplementary search report drawn up and despatched |
Effective date: 20151116 |
|
RIC1 | Information provided on ipc code assigned before grant |
Ipc: C12Q 1/68 20060101AFI20151110BHEP |
|
RAP1 | Party data changed (applicant data changed or rights of an application transferred) |
Owner name: ADAPTIVE BIOTECHNOLOGIES CORPORATION |
|
STAA | Information on the status of an ep patent application or granted ep patent |
Free format text: STATUS: THE APPLICATION IS DEEMED TO BE WITHDRAWN |
|
18D | Application deemed to be withdrawn |
Effective date: 20160614 |