EA201990599A1 - Способ и система для получения и секвенирования библиотеки на основе crispr - Google Patents
Способ и система для получения и секвенирования библиотеки на основе crisprInfo
- Publication number
- EA201990599A1 EA201990599A1 EA201990599A EA201990599A EA201990599A1 EA 201990599 A1 EA201990599 A1 EA 201990599A1 EA 201990599 A EA201990599 A EA 201990599A EA 201990599 A EA201990599 A EA 201990599A EA 201990599 A1 EA201990599 A1 EA 201990599A1
- Authority
- EA
- Eurasian Patent Office
- Prior art keywords
- ligation
- sequening
- crispr
- obtaining
- end regions
- Prior art date
Links
Classifications
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- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
- C12N15/1034—Isolating an individual clone by screening libraries
- C12N15/1082—Preparation or screening gene libraries by chromosomal integration of polynucleotide sequences, HR-, site-specific-recombination, transposons, viral vectors
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
- C12N15/1034—Isolating an individual clone by screening libraries
- C12N15/1089—Design, preparation, screening or analysis of libraries using computer algorithms
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
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- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2521/00—Reaction characterised by the enzymatic activity
- C12Q2521/50—Other enzymatic activities
- C12Q2521/501—Ligase
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2525/00—Reactions involving modified oligonucleotides, nucleic acids, or nucleotides
- C12Q2525/10—Modifications characterised by
- C12Q2525/191—Modifications characterised by incorporating an adaptor
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2531/00—Reactions of nucleic acids characterised by
- C12Q2531/10—Reactions of nucleic acids characterised by the purpose being amplify/increase the copy number of target nucleic acid
- C12Q2531/113—PCR
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2535/00—Reactions characterised by the assay type for determining the identity of a nucleotide base or a sequence of oligonucleotides
- C12Q2535/122—Massive parallel sequencing
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- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
- G16B25/10—Gene or protein expression profiling; Expression-ratio estimation or normalisation
-
- Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y02—TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
- Y02A—TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
- Y02A90/00—Technologies having an indirect contribution to adaptation to climate change
- Y02A90/10—Information and communication technologies [ICT] supporting adaptation to climate change, e.g. for weather forecasting or climate simulation
Landscapes
- Life Sciences & Earth Sciences (AREA)
- Chemical & Material Sciences (AREA)
- Engineering & Computer Science (AREA)
- Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- General Engineering & Computer Science (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Organic Chemistry (AREA)
- Biotechnology (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Biomedical Technology (AREA)
- Physics & Mathematics (AREA)
- General Health & Medical Sciences (AREA)
- Biophysics (AREA)
- Molecular Biology (AREA)
- Bioinformatics & Computational Biology (AREA)
- Microbiology (AREA)
- Biochemistry (AREA)
- Analytical Chemistry (AREA)
- Crystallography & Structural Chemistry (AREA)
- Plant Pathology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Virology (AREA)
- Evolutionary Biology (AREA)
- Medical Informatics (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Theoretical Computer Science (AREA)
- Immunology (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Chemical Kinetics & Catalysis (AREA)
Abstract
Варианты осуществления способа и системы для усовершенствованного секвенирования микробиома могут включать создание комплексов гид-РНК для набора мишеней, соответствующих набору таксонов, ассоциированных с заболеванием, связанным с микроорганизмами; процессинг биологического образца комплексами гРНК для получения фрагментов нуклеиновых кислот микроорганизмов, содержащих набор концевых областей, ассоциированных с набором мишеней; лигирование набора концевых областей с набором адаптеров, имеющих общую адаптерную последовательность; и амплификацию набора мишеней на основе лигированного набора концевых областей и набора праймеров, имеющих общую последовательность праймера, ассоциированную с адаптерной последовательностью.
Applications Claiming Priority (2)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US201662400401P | 2016-09-27 | 2016-09-27 | |
PCT/US2017/053822 WO2018064226A1 (en) | 2016-09-27 | 2017-09-27 | Method and system for crispr-based library preparation and sequencing |
Publications (1)
Publication Number | Publication Date |
---|---|
EA201990599A1 true EA201990599A1 (ru) | 2019-10-31 |
Family
ID=61687683
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
EA201990599A EA201990599A1 (ru) | 2016-09-27 | 2017-09-27 | Способ и система для получения и секвенирования библиотеки на основе crispr |
Country Status (13)
Country | Link |
---|---|
US (1) | US11572555B2 (ru) |
EP (1) | EP3519593A1 (ru) |
JP (1) | JP7239988B2 (ru) |
KR (1) | KR20190052132A (ru) |
CN (1) | CN109790576A (ru) |
AU (1) | AU2017335766A1 (ru) |
BR (1) | BR112019005810A2 (ru) |
CA (1) | CA3038661A1 (ru) |
CO (1) | CO2019004124A2 (ru) |
EA (1) | EA201990599A1 (ru) |
SG (1) | SG11201901730QA (ru) |
WO (1) | WO2018064226A1 (ru) |
ZA (1) | ZA201901372B (ru) |
Families Citing this family (10)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN107190008A (zh) * | 2017-07-19 | 2017-09-22 | 苏州吉赛基因测序科技有限公司 | 一种基于Crispr/cas9的捕获基因组目标序列的方法及其在高通量测序中的应用 |
JP2021521884A (ja) * | 2018-04-18 | 2021-08-30 | リガンダル・インコーポレイテッド | ゲノム編集方法及び組成物 |
EP3841219A4 (en) * | 2018-08-24 | 2022-05-04 | Swift Biosciences, Inc. | ASYMMETRICAL TARGETED AMPLIFICATION METHODS |
CN110541026A (zh) * | 2019-08-17 | 2019-12-06 | 昆明医科大学第一附属医院 | 一种检测溃疡性结肠炎的生物标志物及应用 |
CN112080571B (zh) * | 2020-09-22 | 2022-11-11 | 扬州大学 | 基于CRISPR-Cas12b系统的空肠弯曲菌检测试剂盒和方法 |
CN112176048A (zh) * | 2020-11-02 | 2021-01-05 | 光明乳业股份有限公司 | 一种发酵乳的杂菌检测方法 |
CN112029699B (zh) * | 2020-11-04 | 2021-06-08 | 中国农业科学院北京畜牧兽医研究所 | 一种基于内源CRISPR-Cas系统的丁酸梭菌基因编辑系统及其应用 |
KR102304402B1 (ko) * | 2021-03-26 | 2021-09-24 | 주식회사 에이치이엠파마 | 머신러닝 모델을 이용하여 비만 여부를 판별하는 방법 및 진단 장치 |
KR20220158948A (ko) * | 2021-05-25 | 2022-12-02 | 주식회사 에이치이엠파마 | 머신러닝 모델을 이용하여 복부팽만 유무를 판별하는 방법 및 진단 장치 |
CN113528633B (zh) * | 2021-08-12 | 2024-06-11 | 湖北伯远合成生物科技有限公司 | 一种快速分析CRISPR/Cas9基因编辑载体构建情况的方法及应用 |
Family Cites Families (13)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US3003330A (en) | 1959-06-26 | 1961-10-10 | George L Coad | Heat pump defrosting unit |
US4683195A (en) | 1986-01-30 | 1987-07-28 | Cetus Corporation | Process for amplifying, detecting, and/or-cloning nucleic acid sequences |
EP1415160A2 (en) | 2000-09-30 | 2004-05-06 | Diversa Corporation | Whole cell engineering by mutagenizing a substantial portion of a starting genome, combining mutations, and optionally repeating |
JP4480715B2 (ja) | 2003-01-29 | 2010-06-16 | 454 コーポレーション | 二重末端シーケンシング |
WO2007100384A2 (en) * | 2005-10-24 | 2007-09-07 | Invitrogen Corporation | Three frame cdna expression libraries for functional screening of proteins |
US9085798B2 (en) | 2009-04-30 | 2015-07-21 | Prognosys Biosciences, Inc. | Nucleic acid constructs and methods of use |
US9873907B2 (en) * | 2013-05-29 | 2018-01-23 | Agilent Technologies, Inc. | Method for fragmenting genomic DNA using CAS9 |
GB2535034A (en) | 2013-07-21 | 2016-08-10 | Whole Biome Inc | Methods and systems for microbiome characterization, monitoring and treatment |
WO2015113063A1 (en) | 2014-01-27 | 2015-07-30 | Georgia Tech Research Corporation | Methods and systems for identifying crispr/cas off-target sites |
CA2962466C (en) * | 2014-10-21 | 2023-01-10 | uBiome, Inc. | Method and system for microbiome-derived diagnostics and therapeutics |
JP2017533723A (ja) * | 2014-11-17 | 2017-11-16 | イェダ リサーチ アンド ディベロップメント カンパニー リミテッドYeda Research And Development Co.Ltd. | マイクロバイオーム解析方法 |
JP6947638B2 (ja) * | 2014-12-20 | 2021-10-13 | アーク バイオ, エルエルシー | Crispr/cas系タンパク質を使用する核酸の標的化枯渇、富化および分割のための組成物および方法 |
US10344336B2 (en) | 2015-06-09 | 2019-07-09 | Life Technologies Corporation | Methods, systems, compositions, kits, apparatus and computer-readable media for molecular tagging |
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2017
- 2017-09-27 CA CA3038661A patent/CA3038661A1/en active Pending
- 2017-09-27 JP JP2019516206A patent/JP7239988B2/ja active Active
- 2017-09-27 US US15/717,807 patent/US11572555B2/en active Active
- 2017-09-27 SG SG11201901730QA patent/SG11201901730QA/en unknown
- 2017-09-27 EA EA201990599A patent/EA201990599A1/ru unknown
- 2017-09-27 CN CN201780058889.0A patent/CN109790576A/zh active Pending
- 2017-09-27 BR BR112019005810A patent/BR112019005810A2/pt not_active Application Discontinuation
- 2017-09-27 WO PCT/US2017/053822 patent/WO2018064226A1/en unknown
- 2017-09-27 AU AU2017335766A patent/AU2017335766A1/en not_active Abandoned
- 2017-09-27 EP EP17857367.1A patent/EP3519593A1/en active Pending
- 2017-09-27 KR KR1020197011804A patent/KR20190052132A/ko not_active IP Right Cessation
-
2019
- 2019-03-05 ZA ZA201901372A patent/ZA201901372B/en unknown
- 2019-04-25 CO CONC2019/0004124A patent/CO2019004124A2/es unknown
Also Published As
Publication number | Publication date |
---|---|
JP7239988B2 (ja) | 2023-03-15 |
WO2018064226A1 (en) | 2018-04-05 |
SG11201901730QA (en) | 2019-03-28 |
US20180087051A1 (en) | 2018-03-29 |
ZA201901372B (en) | 2019-11-27 |
CO2019004124A2 (es) | 2019-05-10 |
KR20190052132A (ko) | 2019-05-15 |
US11572555B2 (en) | 2023-02-07 |
EP3519593A1 (en) | 2019-08-07 |
BR112019005810A2 (pt) | 2019-06-25 |
AU2017335766A1 (en) | 2019-03-28 |
CN109790576A (zh) | 2019-05-21 |
JP2019528752A (ja) | 2019-10-17 |
CA3038661A1 (en) | 2018-04-05 |
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