CN115803816A - 具有情境感知的基于人工智能的碱基检出器 - Google Patents

具有情境感知的基于人工智能的碱基检出器 Download PDF

Info

Publication number
CN115803816A
CN115803816A CN202280005054.XA CN202280005054A CN115803816A CN 115803816 A CN115803816 A CN 115803816A CN 202280005054 A CN202280005054 A CN 202280005054A CN 115803816 A CN115803816 A CN 115803816A
Authority
CN
China
Prior art keywords
intensity
image
context data
sequencing
neural network
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Pending
Application number
CN202280005054.XA
Other languages
English (en)
Chinese (zh)
Inventor
A·起亚
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Inmair Ltd
Original Assignee
Inmair Ltd
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from US17/687,586 external-priority patent/US20220319639A1/en
Application filed by Inmair Ltd filed Critical Inmair Ltd
Publication of CN115803816A publication Critical patent/CN115803816A/zh
Pending legal-status Critical Current

Links

Images

Classifications

    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/20Sequence assembly
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/20Supervised data analysis

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Engineering & Computer Science (AREA)
  • Health & Medical Sciences (AREA)
  • Medical Informatics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Data Mining & Analysis (AREA)
  • Biophysics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biotechnology (AREA)
  • Evolutionary Biology (AREA)
  • General Health & Medical Sciences (AREA)
  • Theoretical Computer Science (AREA)
  • Databases & Information Systems (AREA)
  • Chemical & Material Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Artificial Intelligence (AREA)
  • Bioethics (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • Analytical Chemistry (AREA)
  • Epidemiology (AREA)
  • Software Systems (AREA)
  • Public Health (AREA)
  • Evolutionary Computation (AREA)
  • Image Analysis (AREA)
  • Management, Administration, Business Operations System, And Electronic Commerce (AREA)
  • Two-Way Televisions, Distribution Of Moving Picture Or The Like (AREA)
CN202280005054.XA 2021-03-31 2022-03-24 具有情境感知的基于人工智能的碱基检出器 Pending CN115803816A (zh)

Applications Claiming Priority (5)

Application Number Priority Date Filing Date Title
US202163169163P 2021-03-31 2021-03-31
US63/169163 2021-03-31
US17/687586 2022-03-04
US17/687,586 US20220319639A1 (en) 2021-03-31 2022-03-04 Artificial intelligence-based base caller with contextual awareness
PCT/US2022/021814 WO2022212180A1 (fr) 2021-03-31 2022-03-24 Appelant de base à base d'intelligence artificielle avec reconnaissance contextuelle

Publications (1)

Publication Number Publication Date
CN115803816A true CN115803816A (zh) 2023-03-14

Family

ID=81579662

Family Applications (1)

Application Number Title Priority Date Filing Date
CN202280005054.XA Pending CN115803816A (zh) 2021-03-31 2022-03-24 具有情境感知的基于人工智能的碱基检出器

Country Status (5)

Country Link
EP (1) EP4315343A1 (fr)
CN (1) CN115803816A (fr)
AU (1) AU2022248999A1 (fr)
CA (1) CA3183578A1 (fr)
WO (1) WO2022212180A1 (fr)

Families Citing this family (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2024137886A1 (fr) * 2022-12-21 2024-06-27 Illumina, Inc. Appel de base dépendant du contexte

Family Cites Families (22)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JPH03147799A (ja) 1989-11-02 1991-06-24 Hoechst Japan Ltd 新規なオリゴヌクレオチドプローブ
CA2415897A1 (fr) 2000-07-07 2002-01-17 Susan H. Hardin Determination de sequence en temps reel
EP1354064A2 (fr) 2000-12-01 2003-10-22 Visigen Biotechnologies, Inc. Synthese d'acides nucleiques d'enzymes, et compositions et methodes modifiant la fidelite d'incorporation de monomeres
US7057026B2 (en) 2001-12-04 2006-06-06 Solexa Limited Labelled nucleotides
DE10219153A1 (de) 2002-04-29 2003-11-20 Siemens Ag Verfahren zur Überprüfung der Durchgängigkeit von Verbindungen in MPLS-Netzen
KR100968736B1 (ko) 2002-05-16 2010-07-08 다우 코닝 코포레이션 난연성 조성물
CN100573321C (zh) 2002-08-07 2009-12-23 日本合成化学工业株式会社 具有青紫色激光感光性抗蚀剂材料层的成像材料及其抗蚀剂成像法
DK3363809T3 (da) 2002-08-23 2020-05-04 Illumina Cambridge Ltd Modificerede nukleotider til polynukleotidsekvensering
GB0321306D0 (en) 2003-09-11 2003-10-15 Solexa Ltd Modified polymerases for improved incorporation of nucleotide analogues
KR100955023B1 (ko) 2003-12-01 2010-04-27 엘지전자 주식회사 디지털 복합 녹화기에서의 데이터 연속 기록방법
WO2005065514A1 (fr) 2004-01-12 2005-07-21 Djibril Soumah Lunette de wc
CN101914620B (zh) 2004-09-17 2014-02-12 加利福尼亚太平洋生命科学公司 核酸测序的方法
WO2006058199A1 (fr) 2004-11-23 2006-06-01 Fazix Corporation Procedes de modulation de niveaux de cholesterol a lipoproteines de haute densite et formulations pharmaceutiques a cet effet
US20060251471A1 (en) 2005-05-06 2006-11-09 Wei-Gen Chen Manual adjustment device for headlamps
DE102005036355A1 (de) 2005-07-29 2007-02-01 Cairos Technologies Ag Verfahren zur Erfassung der Kraft- und Bewegungsverhältnisse an einem Spielgerät
GB0517097D0 (en) 2005-08-19 2005-09-28 Solexa Ltd Modified nucleosides and nucleotides and uses thereof
US8241573B2 (en) 2006-03-31 2012-08-14 Illumina, Inc. Systems and devices for sequence by synthesis analysis
WO2007145365A1 (fr) 2006-06-14 2007-12-21 Jichi Medical University Agent thérapeutique destiné au traitement du cancer et procédé destiné à cribler ledit agent
US7414716B2 (en) 2006-10-23 2008-08-19 Emhart Glass S.A. Machine for inspecting glass containers
US8965076B2 (en) 2010-01-13 2015-02-24 Illumina, Inc. Data processing system and methods
US11783917B2 (en) * 2019-03-21 2023-10-10 Illumina, Inc. Artificial intelligence-based base calling
US11210554B2 (en) * 2019-03-21 2021-12-28 Illumina, Inc. Artificial intelligence-based generation of sequencing metadata

Also Published As

Publication number Publication date
CA3183578A1 (fr) 2022-10-06
AU2022248999A1 (en) 2023-02-02
WO2022212180A1 (fr) 2022-10-06
EP4315343A1 (fr) 2024-02-07

Similar Documents

Publication Publication Date Title
KR20220144375A (ko) 인공 지능 기반 염기 호출자를 위한 버스 네트워크
US11749380B2 (en) Artificial intelligence-based many-to-many base calling
CN115136243A (zh) 基于人工智能的碱基检出器的硬件执行和加速
US20220067489A1 (en) Detecting and Filtering Clusters Based on Artificial Intelligence-Predicted Base Calls
CN115803816A (zh) 具有情境感知的基于人工智能的碱基检出器
US20220319639A1 (en) Artificial intelligence-based base caller with contextual awareness
US20230005253A1 (en) Efficient artificial intelligence-based base calling of index sequences
CN117501373A (zh) 基于人工智能的索引序列的高效碱基检出
WO2023009758A1 (fr) Étalonnage de score de qualité de systèmes d'appel de bases
CN115699019A (zh) 用于碱基检出的神经网络参数量化

Legal Events

Date Code Title Description
PB01 Publication
PB01 Publication
SE01 Entry into force of request for substantive examination
SE01 Entry into force of request for substantive examination