AU2022248999A1 - Artificial intelligence-based base caller with contextual awareness - Google Patents

Artificial intelligence-based base caller with contextual awareness Download PDF

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Publication number
AU2022248999A1
AU2022248999A1 AU2022248999A AU2022248999A AU2022248999A1 AU 2022248999 A1 AU2022248999 A1 AU 2022248999A1 AU 2022248999 A AU2022248999 A AU 2022248999A AU 2022248999 A AU2022248999 A AU 2022248999A AU 2022248999 A1 AU2022248999 A1 AU 2022248999A1
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AU
Australia
Prior art keywords
intensity
images
context data
neural network
sequencing
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Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Pending
Application number
AU2022248999A
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English (en)
Inventor
Amirali Kia
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Illumina Inc
Original Assignee
Illumina Inc
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Filing date
Publication date
Priority claimed from US17/687,586 external-priority patent/US20220319639A1/en
Application filed by Illumina Inc filed Critical Illumina Inc
Publication of AU2022248999A1 publication Critical patent/AU2022248999A1/en
Pending legal-status Critical Current

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Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/20—Sequence assembly
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/20—Supervised data analysis

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  • Life Sciences & Earth Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Engineering & Computer Science (AREA)
  • Health & Medical Sciences (AREA)
  • Medical Informatics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Data Mining & Analysis (AREA)
  • Biophysics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biotechnology (AREA)
  • Evolutionary Biology (AREA)
  • General Health & Medical Sciences (AREA)
  • Theoretical Computer Science (AREA)
  • Databases & Information Systems (AREA)
  • Chemical & Material Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Artificial Intelligence (AREA)
  • Bioethics (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • Analytical Chemistry (AREA)
  • Epidemiology (AREA)
  • Software Systems (AREA)
  • Public Health (AREA)
  • Evolutionary Computation (AREA)
  • Image Analysis (AREA)
  • Management, Administration, Business Operations System, And Electronic Commerce (AREA)
  • Two-Way Televisions, Distribution Of Moving Picture Or The Like (AREA)
AU2022248999A 2021-03-31 2022-03-24 Artificial intelligence-based base caller with contextual awareness Pending AU2022248999A1 (en)

Applications Claiming Priority (5)

Application Number Priority Date Filing Date Title
US202163169163P 2021-03-31 2021-03-31
US63/169,163 2021-03-31
US17/687,586 US20220319639A1 (en) 2021-03-31 2022-03-04 Artificial intelligence-based base caller with contextual awareness
US17/687,586 2022-03-04
PCT/US2022/021814 WO2022212180A1 (fr) 2021-03-31 2022-03-24 Appelant de base à base d'intelligence artificielle avec reconnaissance contextuelle

Publications (1)

Publication Number Publication Date
AU2022248999A1 true AU2022248999A1 (en) 2023-02-02

Family

ID=81579662

Family Applications (1)

Application Number Title Priority Date Filing Date
AU2022248999A Pending AU2022248999A1 (en) 2021-03-31 2022-03-24 Artificial intelligence-based base caller with contextual awareness

Country Status (5)

Country Link
EP (1) EP4315343A1 (fr)
CN (1) CN115803816A (fr)
AU (1) AU2022248999A1 (fr)
CA (1) CA3183578A1 (fr)
WO (1) WO2022212180A1 (fr)

Family Cites Families (22)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JPH03147799A (ja) 1989-11-02 1991-06-24 Hoechst Japan Ltd 新規なオリゴヌクレオチドプローブ
DE60131194T2 (de) 2000-07-07 2008-08-07 Visigen Biotechnologies, Inc., Bellaire Sequenzbestimmung in echtzeit
AU2002227156A1 (en) 2000-12-01 2002-06-11 Visigen Biotechnologies, Inc. Enzymatic nucleic acid synthesis: compositions and methods for altering monomer incorporation fidelity
US7057026B2 (en) 2001-12-04 2006-06-06 Solexa Limited Labelled nucleotides
DE10219153A1 (de) 2002-04-29 2003-11-20 Siemens Ag Verfahren zur Überprüfung der Durchgängigkeit von Verbindungen in MPLS-Netzen
JP2005526164A (ja) 2002-05-16 2005-09-02 ダウ・コーニング・コーポレイション 難燃性組成物
KR20050047088A (ko) 2002-08-07 2005-05-19 미쓰비시 가가꾸 가부시키가이샤 청자색 레이저 감광성 레지스트재층을 갖는 화상 형성재및 그 레지스트 화상 형성 방법
DK3002289T3 (en) 2002-08-23 2018-04-23 Illumina Cambridge Ltd MODIFIED NUCLEOTIDES FOR POLYNUCLEOTIDE SEQUENCE
GB0321306D0 (en) 2003-09-11 2003-10-15 Solexa Ltd Modified polymerases for improved incorporation of nucleotide analogues
KR100955023B1 (ko) 2003-12-01 2010-04-27 엘지전자 주식회사 디지털 복합 녹화기에서의 데이터 연속 기록방법
WO2005065514A1 (fr) 2004-01-12 2005-07-21 Djibril Soumah Lunette de wc
GB2423819B (en) 2004-09-17 2008-02-06 Pacific Biosciences California Apparatus and method for analysis of molecules
WO2006058199A1 (fr) 2004-11-23 2006-06-01 Fazix Corporation Procedes de modulation de niveaux de cholesterol a lipoproteines de haute densite et formulations pharmaceutiques a cet effet
US20060251471A1 (en) 2005-05-06 2006-11-09 Wei-Gen Chen Manual adjustment device for headlamps
DE102005036355A1 (de) 2005-07-29 2007-02-01 Cairos Technologies Ag Verfahren zur Erfassung der Kraft- und Bewegungsverhältnisse an einem Spielgerät
GB0517097D0 (en) 2005-08-19 2005-09-28 Solexa Ltd Modified nucleosides and nucleotides and uses thereof
US8241573B2 (en) 2006-03-31 2012-08-14 Illumina, Inc. Systems and devices for sequence by synthesis analysis
WO2007145365A1 (fr) 2006-06-14 2007-12-21 Jichi Medical University Agent thérapeutique destiné au traitement du cancer et procédé destiné à cribler ledit agent
US7414716B2 (en) 2006-10-23 2008-08-19 Emhart Glass S.A. Machine for inspecting glass containers
US8965076B2 (en) 2010-01-13 2015-02-24 Illumina, Inc. Data processing system and methods
US11210554B2 (en) * 2019-03-21 2021-12-28 Illumina, Inc. Artificial intelligence-based generation of sequencing metadata
US11676685B2 (en) * 2019-03-21 2023-06-13 Illumina, Inc. Artificial intelligence-based quality scoring

Also Published As

Publication number Publication date
CN115803816A (zh) 2023-03-14
EP4315343A1 (fr) 2024-02-07
WO2022212180A1 (fr) 2022-10-06
CA3183578A1 (fr) 2022-10-06

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