CN112852865A - Oaan-1 protein, coding gene and application of related biological material thereof - Google Patents

Oaan-1 protein, coding gene and application of related biological material thereof Download PDF

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CN112852865A
CN112852865A CN202110190721.3A CN202110190721A CN112852865A CN 112852865 A CN112852865 A CN 112852865A CN 202110190721 A CN202110190721 A CN 202110190721A CN 112852865 A CN112852865 A CN 112852865A
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李家洋
余泓
孟祥兵
张静昆
刘贵富
荆彦辉
陈明江
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Abstract

The invention discloses an OaAn-1 protein, a coding gene and application of related biological materials thereof. The OaAn-1 protein is a1) or a2) or a3) protein as follows: a1) the amino acid sequence is protein shown as SEQ ID No.1 or SEQ ID No.2 in the sequence table; a2) the protein with the same biological function is obtained by substituting and/or deleting and/or adding one or more amino acid residues in the amino acid sequence shown in SEQ ID No.1 or SEQ ID No.2 in the sequence table; a3) protein which has 80% or more than 80% of identity with the amino acid sequence limited by SEQ ID No.1 or SEQ ID No.2 in the sequence table, is derived from rice and has the same biological function. According to the specific embodiment of the invention, the OaAn-1 protein coding genes OaAn-1-CC and OaAn-1-DD are simultaneously knocked out by a genome editing technology, so that the rice with obviously shortened miscanthus length is obtained.

Description

Oaan-1 protein, coding gene and application of related biological material thereof
Technical Field
The invention relates to the technical field of biology, in particular to an OaAn-1 protein, a coding gene and application of related biological materials thereof.
Background
The awn of the rice refers to a needle-shaped body with inverted saw teeth, which is positioned at the top end of a rice glume. Wild rice has longer awns, while cultivated rice shows the character of short awns, even no awns. In the natural growth state, the longer awns help the wild rice seeds to spread and store through the relevant media, facilitating the self-reproduction, and the spiky awns also help to protect the seeds from being eaten by predators. However, too long a length of cultivated rice awns grown in a cultivated state is detrimental to the harvesting, processing and storage of seeds. The tetraploid wild rice Oryza alta has the advantages of large biomass, strong adaptability, strong stress resistance and the like, but because the wild rice Oryza alta is not domesticated, the length of the awns is more than 4cm, the wild rice Oryza alta is not beneficial to field harvest, and meanwhile, the difficulty of rice hulling is increased. Therefore, the method for rapidly domesticating the wild rice awn length has practical value by changing long awn into short awn or awn-free character which is more suitable for production practice of people.
Disclosure of Invention
The invention provides application of OaAn-1 protein in regulating rice awn length or preparation of a product for regulating rice awn length.
The OaAn-1 protein is a1) or a2) or a3) protein as follows:
a1) the amino acid sequence is protein shown as SEQ ID No.1 or SEQ ID No.2 in the sequence table;
a2) the protein with the same biological function is obtained by substituting and/or deleting and/or adding one or more amino acid residues in the amino acid sequence shown in SEQ ID No.1 or SEQ ID No.2 in the sequence table;
a3) protein which has 80% or more than 80% of identity with the amino acid sequence limited by SEQ ID No.1 or SEQ ID No.2 in the sequence table, is derived from rice and has the same biological function.
Hereinbefore, said substitution and/or deletion and/or addition of one or several amino acid residues is a substitution and/or deletion and/or addition of not more than 10 amino acid residues.
The invention also provides the application of the OaAn-1 coding gene in regulating the rice awn length or the application in preparing rice awn length regulating products,
the OaAn-1 protein coding gene is a DNA molecule shown as c1) or c2) or c3) or c 4):
c1) the coding sequence is a DNA molecule shown in SEQ ID No.3 or SEQ ID No.4 in a sequence table;
c2) the nucleotide sequence is a DNA molecule shown as SEQ ID No.5 or SEQ ID No.6 in the sequence table;
c3) a DNA molecule which has 90 percent or more than 90 percent of identity with the nucleotide sequence limited by c1) or c2), is derived from rice and encodes the OaAn-1 protein;
c4) a DNA molecule which is hybridized with the nucleotide sequence limited by c1) or c2) under strict conditions and codes the OaAn-1 protein.
The nucleotide sequence of the gene encoding the OaAn-1 protein of the present invention can be easily mutated by a person of ordinary skill in the art using known methods, such as directed evolution and point mutation. Those nucleotides which are artificially modified to have 90% or more identity to the nucleotide sequence provided by the present invention are derived from the nucleotide sequence of the present invention and are equivalent to the sequence of the present invention as long as they encode the OaAn-1 protein and are derived from rice. The term "identity" as used herein refers to sequence similarity to a native nucleic acid sequence.
The invention also provides the application of the biological material related to the OaAn-1 protein in regulating rice growth or preparing rice growth regulating products,
the biological material is any one of the following C1) to C6) and D1) to D7):
C1) an expression cassette containing the OaAn-1 protein coding gene;
C2) a recombinant vector containing the gene encoding the OaAn-1 protein, or a recombinant vector containing the expression cassette of C1);
C3) a recombinant microorganism containing a gene encoding said OaAn-1 protein, or a recombinant microorganism containing C1) said expression cassette, or a recombinant microorganism containing C2) said recombinant vector;
C4) a transgenic plant cell line containing the gene encoding the OaAn-1 protein, or a transgenic plant cell line containing the expression cassette of C1);
C5) transgenic plant tissue containing the gene encoding the OaAn-1 protein, or transgenic plant tissue containing the expression cassette of C1);
C6) a transgenic plant organ containing said gene encoding an OaAn-1 protein, or a transgenic plant organ containing C1) said expression cassette;
D1) a nucleic acid molecule that inhibits or reduces the expression of a gene encoding said OaAn-1 protein;
D2) an expression cassette comprising the nucleic acid molecule of D1);
D3) a recombinant vector containing the nucleic acid molecule of D1) or a recombinant vector containing the expression cassette of D2);
D4) a recombinant microorganism containing D1) the nucleic acid molecule, or a recombinant microorganism containing D2) the expression cassette, or a recombinant microorganism containing D3) the recombinant vector;
D5) a transgenic plant cell line comprising D1) the nucleic acid molecule or a transgenic plant cell line comprising the expression cassette of D2);
D6) transgenic plant tissue comprising the nucleic acid molecule of D1) or transgenic plant tissue comprising the expression cassette of D2);
D7) a transgenic plant organ containing D1) the nucleic acid molecule or a transgenic plant organ containing D2) the expression cassette.
The invention also provides a method for shortening the rice miscanthus length, which comprises the steps of reducing the content and/or the activity of the OaAn-1 protein in rice and/or reducing or inhibiting the expression quantity of the OaAn-1 protein coding gene in rice, thereby shortening the miscanthus length of the rice.
The reduction or inhibition of the expression level of the gene encoding the OaAn-1 protein in rice can be achieved by any method known in the art, such as chemical mutagenesis, physical mutagenesis, RNAi, site-directed genome editing, or homologous recombination, to cause deletion, insertion, or base transition mutation in the gene, thereby achieving reduction or loss of the gene function. In any of these methods, the entire gene encoding the OaAn-1 protein may be targeted, and each element regulating the expression of the OaAn-1 gene may be targeted, as long as the loss or reduction of the gene function can be achieved. For example, the exon of the gene encoding OaAn-1 can be targeted.
In the above-mentioned genome site-directed editing method, Zinc Finger Nuclease (ZFN) technology, Transcription activator-like effector nuclease (TALEN) technology, Clustered regularly spaced short palindromic repeats and their related systems (Clustered regularly interspaced short palindromic repeats/CRISPR associated, CRISPR/Cas9 system) technology, and other technologies capable of realizing genome site-directed editing can be used.
Alternatively, the method comprises introducing into the rice a substance that reduces or inhibits the expression of the gene encoding the OaAn-1 protein according to the above method.
For example, a nuclease (i.e., a substance which reduces or inhibits the expression of the gene encoding the OaAn-1 protein) specific to a target fragment is introduced into the rice, the target fragment is sheared under the action of the nuclease, and then the target fragment is subjected to site-directed modification through the self-DNA repair of the rice, so that the function reduction or the loss of the gene encoding the OaAn-1 protein is realized.
Among the above methods, the method for expressing a nuclease specific to a target fragment in rice may be: directly introducing a nuclease or genetic material for expressing the nuclease into rice. Wherein the genetic material is a DNA plasmid or a linear fragment of DNA or in vitro transcribed RNA. Nuclease refers to an active functional substance that undergoes site-directed editing.
The method for expressing the nuclease specific to the target fragment in the rice can further comprise the following steps: and planting and growing the rice after the nuclease or the genetic material is introduced under the condition of hygromycin selective pressure.
Alternatively, when the CRISPR/Cas9 method is used, the genetic material is a recombinant vector or linear fragment of DNA capable of transcribing a guide RNA and expressing Cas9 protein; or the genetic material consists of a recombinant vector or linear fragment of DNA capable of transcribing a guide RNA (or two recombinant vectors or linear fragments of DNA capable of transcribing crRNA and tracrRNA, respectively), and a recombinant vector or linear fragment of DNA or RNA capable of expressing a Cas9 protein; or the genetic material consists of a guide RNA, and a recombinant vector or linear fragment of DNA or RNA capable of expressing Cas9 protein; the guide RNA is RNA with a palindromic structure formed by combining crRNA and tracrRNA through partial base pairing; the crRNA contains an RNA fragment that is capable of complementary binding to the target fragment. In the recombinant vector, the promoter that initiates transcription of the nucleotide sequence encoding the guide RNA may be the OsU3 promoter or the OsU6a promoter.
Alternatively, when a TALEN nuclease is used, the genetic material for expressing the nuclease specific for the target fragment can be a recombinant plasmid that simultaneously expresses paired TALEN proteins, or a linear fragment of DNA that simultaneously expresses paired TALEN proteins; or RNA that simultaneously expresses paired TALEN proteins; the TALEN protein consists of a DNA binding domain and a Fok I domain capable of recognizing and binding to the target fragment;
alternatively, when zinc finger nucleases are used, the genetic material for expressing nucleases specific for the target fragment may be a recombinant plasmid simultaneously expressing paired ZFN proteins, or linear fragments of DNA simultaneously expressing paired ZFN proteins; or RNA simultaneously expressing paired ZFN proteins; the ZFN protein consists of a DNA binding domain and a fokl domain that is capable of recognizing and binding to the target fragment.
Optionally, according to the above method, the substance reducing or inhibiting the expression of the gene encoding the OaAn-1 protein is any one of the above biomaterials D1) -D4).
Optionally, according to the above method, the nucleic acid molecule of D1) is a DNA molecule that expresses a gRNA targeting the OaAn-1 protein-encoding gene or a gRNA targeting the OaAn-1 protein-encoding gene; the target sequence of gRNA of the OaAn-1 protein coding gene is shown as SEQ ID No.7 and/or SEQ ID No. 8. The OaAn-1 protein encoding gene can be subjected to site-directed editing by a CRISPR/Cas9 method, so that the expression level of the OaAn-1 protein encoding gene in the plant is reduced or inhibited, for example, a recombinant plasmid vector expressing Cas9 protein and gRNA is infected by agrobacterium to realize the transfer and integration of a foreign gene to a plant cell, and specifically, the recombinant plasmid CRISPR-OaAn-1-2Target prepared in the following examples can be used.
The CRISPR-Oaan-1-2Target is prepared by the following method: the designed Target primers are respectively constructed into intermediate vectors pYLsgRNA-OsU3 and pYLsgRNA-OsU6a by a fusion PCR method, and then the fragments are connected with a pYLCISPR/Cas 9Pubi-H vector skeleton by a 'gold gate cloning' method to obtain a recombinant vector which is recorded as CRISPR-OaAn-1-2 Target.
Optionally, according to the above method, the method for reducing the content and/or activity of oan-1 protein in plants and/or reducing or inhibiting the expression level of the oan-1 protein encoding gene in plants comprises subjecting the oan-1 protein encoding gene represented by SEQ ID No.5 or SEQ ID No.6 in rice genome to at least one of the following mutations:
1) inserting a nucleotide T between 17 th and 18 th nucleotides in a target point SEQ ID No.8 of the Oaan-1 protein coding gene shown in SEQ ID No.5 in a rice genome, or deleting a G;
2) a nucleotide T is inserted between the 17 th to 18 th nucleotides in the target point SEQ ID No.7 of the Oaan-1 protein coding gene shown in the SEQ ID No.6 in the rice genome or a nucleotide A is inserted and/or a nucleotide T is inserted between the 17 th to 18 th nucleotides in the target point SEQ ID No.8 or a G is deleted.
The above method is applicable to any rice plant, only containing the above target sequence, and examples of the present invention are long-stalked wild rice (Oryza alta, CCDD, 2 n-4 x-48).
Because the high-stalk wild rice is a tetraploid plant, the rice obtained by the method after transformation can be rice with all dyeing monomers edited at fixed points, and can also be rice with part of the dyeing monomers edited at fixed points, 2target points are designed by the method, and any one target point plays a role, so that the awn length can be shortened.
The OaAn-1 protein, the OaAn-1 protein coding gene and the biological materials related to the OaAn-1 protein are also in the protection scope of the invention.
According to the specific embodiment of the invention, the OaAn-1 protein coding genes OaAn-1-CC and OaAn-1-DD are simultaneously knocked out by a genome editing technology, so that the rice with obviously shortened miscanthus length is obtained.
Drawings
FIG. 1 is a design drawing of Oaan-1 target in O.alta
FIG. 2 is a diagram of the partial backbone and double-target structure of pYLCRISPR/Cas9Pubi-H vector.
FIG. 3 is the electrophoresis diagram of the second round PCR amplification expression cassette in the plasmid CRISPR-Oaan-1-2Target constructed in example 1.
FIG. 4 is a PCR electrophoresis chart of bacterial liquid constructed by the plasmid CRISPR-OaaN-1-2Target in example 1, and a band at an arrow is a Target band.
FIG. 5 shows the results of the amplification of OaAn-1-CC and OaAn-1-DD from the T0 transformed shoots of example 1, wherein lanes 1-12 show the results of the amplification of T0 transformed shoots, respectively.
FIG. 6 shows the sequencing results of the partially positive seedlings in example 1.
FIG. 7 shows the comparison of awns of example 2 partially positive-edited seedlings and wild type.
FIG. 8 is a statistical analysis of the data for the partially positive edited shoots and wild type length (Awn length) of example 2, averaged. + -. standard deviation, and for significance, P < 0.01.
Detailed Description
The present invention is described in further detail below with reference to specific embodiments, which are given for the purpose of illustration only and are not intended to limit the scope of the invention. The examples provided below serve as a guide for further modifications by a person skilled in the art and do not constitute a limitation of the invention in any way.
The experimental procedures in the following examples, unless otherwise indicated, are conventional and are carried out according to the techniques or conditions described in the literature in the field or according to the instructions of the products. Materials, reagents and the like used in the following examples are commercially available unless otherwise specified.
Expression vectors pYLsgRNA-OsU3, pYLsgRNA-OsU6a, binary vector pYLCRISPR/Cas9Pubi-H, CRISPR knockout vector construction methods are disclosed in the literature "Ma, X., et al. A robust CRISPR/Cas9 system for compatibility.high-efficiency multiplex gene editing in monocot and di cot plants.molecular Plant 8, 1274-1284. (2015)", and publicly available from the institute of genetics and developmental biology.
The tetraploid wild rice in the following examples is wild rice Oryza alta 2007-24, which is a high-stalk wild rice seed material (o. alta Swallen, chromosome set CCDD, No. YD-7900) in left column 1.1 of page 906 of document 1, and publicly available from the institute of genetics and developmental biology or the national germplasm nanning wild rice nursery. Document 1: douglas et al, research on callus-induced differentiation of high-stalk wild rice, journal of agriculture in the southwest, 2014, 27(3), 905 and 909.
Tetraploid wild rice Oryza alta is an allotetraploid, with most of the genes having copies on both the CC and DD subgenomes. Through comparison analysis, two homologous genes of An-1 exist in Oryza alta, the gene positioned on the chromosome 4 of the CC subgenome is named as Oaan-1-CC, and the other gene positioned on the chromosome 4 of the DD subgenome is named as Oaan-1-DD. The sequence of OaAn-1-CC is shown in SEQ ID No.5, the amino acid sequence of the coded OaAn-1 protein is shown in SEQ ID No.1, and the CDS of the OaAn-1 protein is shown in SEQ ID No. 3. The sequence of OaAn-1-DD is shown as SEQ ID No.6, the amino acid sequence of the coded OaAn-1 protein is shown as SEQ ID No.2, and the CDS of the OaAn-1 protein is shown as SEQ ID No. 4.
Example 1 knocking out OaAn-1 protein encoding Gene in Rice to shorten Rice growth
1. Construction of positive editing seedlings by knocking out OaAn-1 protein coding genes in rice
The plasmid CRISPR-Oaan-1-2Target is transformed into agrobacterium EHA105 by an electric excitation method, recombinant agrobacterium is utilized to infect callus of tetraploid wild rice, and then resistance screening, differentiation regeneration and rooting culture are sequentially carried out to obtain T0 generation transformed seedlings.
Specific primers of the OaAn-1 on the CC and DD subgenomic group are designed, the obtained T0 generation transformed seedlings are amplified by the specific primers of the OaAn-1-CC and the OaAn-1-DD (as shown in figure 5), then sequencing is carried out to determine the mutation type, and the T0 generation transformed seedlings containing the mutation are named as positive editing seedlings. FIG. 6 shows mutation types of positive editing seedlings T0-1 and T0-2, specifically T0-1, wherein OaAn-1-CC has a T inserted homozygously at target point 2, and OaAn-1-DD frame shift mutation (a A inserted homozygously at target point 1, and a T inserted homozygously at target point 2). In T0-2, OaAn-1-CC has biallelic mutation (one chromosome is inserted with one T, one chromosome is deleted with one G), and OaAn-1-DD frame shift mutation (one T is homozygously inserted at target point 1, one G is homozygously deleted at target point 2), so that the function of OaAn-1 protein is lost.
The primer pair for amplifying OaAn-1-CC is as follows
OaAn-1-CC-F:5’-CGGTACCATACTCCGACCAC-3’
OaAn-1-CC-R:5’-TGGCACGAGCGACTGCAGCA-3’
The primer pair for amplifying OaAn-1-DD is as follows
OaAn-1-DD-F:5’-AACAAACACTGCTCCGGCCAC-3’
OaAn-1-DD-R:5’-TGGCACGAGCGAGTGGAGAA-3’
The plasmid CRISPR-Oaan-1-2Target was prepared by the following method.
Design of first, target sequence
Designing targets in conserved regions of the first exons of OaAn-1-CC and OaAn-1-DD.
The target sequences (i.e., targets) are as follows:
target site 1: 5'-CCGAAGCGGTCCAAGGTCGC-3' (PAM is CGG, SEQ ID No.7, corresponding to position 996-1015 of SEQ ID No. 6)
Target site 2: 5'-ACATCCATGTGAGGGCGAGG-3' (PAM is AGG, SEQ ID No.8, corresponding to positions 1016-1035 of SEQ ID No.5 and 1087-1106 of SEQ ID No. 6)
Design of second, gRNA
gRNA was designed based on the target sequence.
Construction of recombinant plasmid
The following single-stranded primers with linker sequences (underlined) were synthesized:
U3-OaAn-1-F:5’-CCGAAGCGGTCCAAGGTCGCGTTTTAGAGCTAGAAAT-3’
U3-OaAn-1-R:5’-GCGACCTTGGACCGCTTCGGTGCCACGGATCATCTGC-3’
U6a-OaAn-1-F:5’-ACATCCATGTGAGGGCGAGGGTTTTAGAGCTAGAAAT-3’
U6a-OaAn-1-R:5’-CCTCGCCCTCACATGGATGTCGGCAGCCAAGCCAGCA-3’
synthesizing single-stranded primers for constructing the vector:
U-F:5’-CTCCGTTTTACCTGTGGAATCG-3’
gRNA-R:5’-CGGAGGAAAATTCCATCCAC-3’
U-F, gRNA-R, U3-OaAn-1-F, U3-OaAn-1-R is used as a primer, pYLsgRNA-OsU3 plasmid is used as a template to perform fusion PCR to amplify the pOsU3-OaAn-1gRNA expression cassette. U-F, gRNA-R, U6a-OaAn-1-F, U6a-OaAn-1-R is used as a primer, pYLsgRNA-OsU6a plasmid is used as a template to perform fusion PCR to amplify the pOsU6a-OaAn-1gRNA expression cassette. The PCR product is diluted 10 times and used as a second round PCR amplification template.
Synthesis of second round PCR amplification primers:
B-L:5’-TTCAGAGGTCTCTCTCGACTAGTATGGAATCGGCAGCAAAGG-3’
B2:5’-AGCGTGGGTCTCGTCAGGGTCCATCCACTCCAAGCTC-3’
B2’:5’-TTCAGAGGTCTCTCTGACACTGGAATCGGCAGCAAAGG-3’
B-R:5’-AGCGTGGGTCTCGACCGACGCGTATCCATCCACTCCAAGCTC-3’
B-L, B2 was used as a primer and pOsU3-OaAn-1gRNA expression cassette was used as a template for the second round of PCR amplification. B2' and B-R are used as primers, and pOs6a-OaAn-1gRNA expression cassette is used as a template for carrying out second round PCR amplification. The amplified products were detected by agarose gel electrophoresis, and the fragments were recovered as 564bp and 629bp bands, respectively, as shown in FIG. 2. And (5) purifying and recovering. The second round of purified product was constructed into pYLCRISPR/Cas9Pubi-H (restriction enzyme BsaI, ligase T4 ligase) according to the routine molecular experimental procedure "edge-cut ligation". After transformation of DH 5. alpha. a single clone was picked up and subjected to PCR, a positive single clone with a band size of about 1.2kb was selected and sequenced (FIG. 3). The sequencing primer is SP1 (5'-CCGACATAGATGCAATAACTTC-3'), and the recombinant plasmid with correct sequencing is named as CRISPR-OaaN-1-2 Target.
A schematic diagram of a partial vector backbone of pYLRISPR/Cas 9Pubi-H is shown in FIG. 1A, wherein a Pubi promoter, a nuclear localization signal sequence (NLS), a Cas9 encoding gene (Cas9), a nuclear localization signal sequence (NLS) and a Tnos terminator are connected in sequence. The schematic structural diagram of the double-Target sequence in the CRISPR-oan-1-2 Target is shown in fig. 1B, wherein OsU3 promoter, Target 1 sequence (expressing gRNA targeting Target site 1), OsU6a promoter and Target 2 sequence (expressing gRNA targeting Target site 2) are connected in sequence. In the plasmid CRISPR-Oaan-1-2Target, the aforementioned double Target sequence is ligated after the Tnos terminator.
2. Phenotypic identification of positively-edited shoots
The positive seedlings prepared above, T0-1, T0-2 and tetraploid wild rice (o.alta, wild type), were planted under natural conditions, the field phenotype was observed and the awn length was measured.
As shown in FIGS. 7 and 8, when the OaAn-1-CC and OaAn-1-DD genes are subjected to frame shift mutation, the An-1 protein function is lost, and the awn length is obviously shortened at the T0 generation. The length of wild-type awns is 4.11cm (average value of 20 awns), the length of T0-1 awns is 1.61cm (average value of 20 awns), the length of T0-2 awns is 2.63cm (average value of 20 awns), the length of the seedling awns is shortened in positive editing, and harvesting is facilitated. The invention proves that the rapid domestication of the miscanthus sinensis length can be realized by editing the major gene Oaan-1 of the miscanthus sinensis length in tetraploid wild rice, the miscanthus sinensis length is shortened, and the harvest and the processing are convenient.
The present invention has been described in detail above. It will be apparent to those skilled in the art that the invention can be practiced in a wide range of equivalent parameters, concentrations, and conditions without departing from the spirit and scope of the invention and without undue experimentation. While the invention has been described with reference to specific embodiments, it will be appreciated that the invention can be further modified. In general, this application is intended to cover any variations, uses, or adaptations of the invention following, in general, the principles of the invention and including such departures from the present disclosure as come within known or customary practice within the art to which the invention pertains. The use of some of the essential features is possible within the scope of the claims attached below.
Sequence listing
<110> institute of genetics and developmental biology of Chinese academy of sciences
<120> OaAn-1 protein, coding gene and application of related biological material thereof
<130> 210484
<160> 8
<170> SIPOSequenceListing 1.0
<210> 1
<211> 424
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<213> wild rice (Oryza alta)
<400> 1
Met Ala Asp Glu His Phe Phe Pro Ala Gly Asp Tyr Phe Ser Ser Gly
1 5 10 15
Ala Ala Thr Gly Thr Gly Ala Leu Leu Pro Ala Ala Ser Tyr Gly Met
20 25 30
Met Pro Pro Trp Ala Val Ala Asp Asp Gln Met Met Met Met Val Pro
35 40 45
Ala Ala Ala Glu Ser Val Ala His Phe Asp Ser Ala Leu Ser Ser Leu
50 55 60
Val Ser Ser Pro Gly Gly Gly Gly Gly Leu Val Asn Gly Asn Gly Gly
65 70 75 80
Gly Gly Gly Asp Glu Met Ala Ala Ile Gly Asp Leu Ile Gly Arg Leu
85 90 95
Gly Ser Ile Cys Asn Asn Gly Ala Ser Ala Asn Asn Ser Cys Tyr Ser
100 105 110
Thr Pro Leu Ser Ser Pro Pro Arg Gly Gly Pro Pro Pro Val Thr Ala
115 120 125
Phe Arg Gly Tyr Ala Ala Val Asp Thr Gly Arg Leu Ser Arg Val Ser
130 135 140
Ser Ser Lys Ser Leu Gly Ala Gly Ala Ala Ala Thr Ala Ala Ala Leu
145 150 155 160
Asp Ser Ser Glu Ala Glu Met Ser Pro Thr Thr Ala Ala Gly Asp Gln
165 170 175
Pro Ala Lys Pro Ser Ala Ser Ala Ala Ala Ala Ala Arg Lys Arg Lys
180 185 190
Ser Ser Ala Lys Pro Lys Ala Ser Ser Ser Ser Leu Pro Thr Ala Thr
195 200 205
Ala Ala Thr Thr Asn Ala Ser Pro Lys Arg Ser Lys Val Val Ala Ala
210 215 220
Ala Ala Gly Gly Gly His Asp Gly Asp Gly Asp Ala Ala Thr Gln Glu
225 230 235 240
Glu Lys Pro Glu Pro Thr Lys Asp Tyr Ile His Val Arg Ala Arg Arg
245 250 255
Gly Gln Ala Thr Asp Ser His Ser Leu Ala Glu Arg Val Arg Arg Glu
260 265 270
Arg Ile Ser Glu Arg Met Lys Leu Leu Gln Ser Leu Val Pro Gly Cys
275 280 285
Asn Lys Ile Thr Gly Lys Ala Leu Met Leu Asp Glu Ile Ile Asn Tyr
290 295 300
Val Gln Ser Leu Gln Arg Gln Val Glu Phe Leu Ser Met Lys Leu Ala
305 310 315 320
Thr Met Asn Pro Gln Leu Asp Phe Asp Gly His Tyr Met Pro Ser Lys
325 330 335
Asp Met Asn His Met Pro Val Pro Thr Tyr Pro Ser Gly Asp Pro Thr
340 345 350
Thr Ala Thr Val Phe Ser Tyr Thr Gly Ser Pro Ala Thr Ala Asp Pro
355 360 365
Phe Asn Pro Tyr Asn Cys Trp Glu Leu Asp Leu His Thr Ala Met Gln
370 375 380
Met Arg Ala Ala Ala Ala Thr Gly Leu Ser Gln Asp Gly Leu Val Ala
385 390 395 400
Ala Met Ala Ser Ser Pro Leu Pro His Gln Pro Pro His Gly Phe Tyr
405 410 415
Gly Asp Asp Met Lys Ala Glu Pro
420
<210> 2
<211> 444
<212> PRT
<213> wild rice (Oryza alta)
<400> 2
Met Ala Asp Glu His Phe Phe Pro Ala Gly Asp Tyr Phe Ser Ser Ser
1 5 10 15
Ser Gly Ala Thr Gly Thr Gly Ala Leu Leu Pro Gly Gly Leu Asp Val
20 25 30
Ala Ala Ala Ala Ala Tyr Gly Met Met Pro Pro Trp Ala Val Ala Asp
35 40 45
Gln Met Met Met Met Met Val Pro Ala Ala Gly Ala Glu Ala Glu Cys
50 55 60
Val Ala His Phe Asp Ser Ala Leu Ser Ser Leu Val Ser Ser Pro Gly
65 70 75 80
Gly Gly Gly Gly Leu Val Asn Gly Asn Gly Gly Gly Cys Gly Gly Gly
85 90 95
Asp Glu Met Ala Ala Ile Gly Asp Leu Ile Gly Arg Leu Gly Ser Ile
100 105 110
Cys Asn Gly Ala Ser Ala Asn Asn Ser Cys Tyr Ser Thr Pro Leu Ser
115 120 125
Ser Pro Pro Arg Gly Gly Pro Pro Pro Pro Pro Pro Leu Thr Ala Phe
130 135 140
Arg Gly Tyr Ala Ala Val Asp Thr Gly Arg Leu Ser Arg Val Ser Ser
145 150 155 160
Ser Lys Ser Leu Gly Ala Ala Ala Leu Glu Ser Ser Glu Ala Glu Met
165 170 175
Ser Pro Thr Thr Ala Ala Gly Asp Gln Pro Ala Lys Pro Ser Ala Ala
180 185 190
Ala Ala Ala Ala Ala Arg Lys Arg Lys Ser Ser Ala Lys Ala Lys Ala
195 200 205
Thr Ser Ser Ser Leu Pro Thr Ala Thr Ala Ala Thr Asn Ala Ser Pro
210 215 220
Lys Arg Ser Lys Val Ala Gly Gly Gly Gly Gly Asp Gly Asp Gly Asp
225 230 235 240
Ala Ala Ala Glu Glu Glu Lys Pro Glu Pro Ala Lys Asp Tyr Ile His
245 250 255
Val Arg Ala Arg Arg Gly Gln Ala Thr Asp Ser His Ser Leu Ala Glu
260 265 270
Arg Val Arg Arg Glu Arg Ile Ser Glu Arg Met Lys Leu Leu Gln Ser
275 280 285
Leu Val Pro Gly Cys Asn Lys Ile Thr Gly Lys Ala Leu Met Leu Asp
290 295 300
Glu Ile Ile Asn Tyr Val Gln Ser Leu Gln Arg Gln Val Glu Phe Leu
305 310 315 320
Ser Met Lys Leu Ala Thr Met Asn Pro Gln Leu Asp Phe Asp Gly His
325 330 335
Tyr Ile Thr Ser Lys Asp Thr Ser His Met Pro Met Leu Ala Tyr Pro
340 345 350
Ser Gly Asp Leu Thr Thr Ala Thr Ala Phe Ser Tyr Thr Gly Ser Pro
355 360 365
Ala Ala Thr Ala Ala Asp Pro Phe Ala Ala Tyr Asn Cys Trp Glu Leu
370 375 380
Val Asp Leu His Thr Lys Met Gln Ile Gly Ala Thr Thr Thr Gly Leu
385 390 395 400
Asn Gln Asp Gly Pro Ser Val Ala Ala Met Ala Pro Ser Pro Ser Pro
405 410 415
Pro Leu Pro His His Pro Pro His Gly Phe Tyr Gly Gly Gln Lys Gln
420 425 430
Gln Gly Thr Thr Val Asn His Met Lys Ala Glu Pro
435 440
<210> 3
<211> 1275
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 3
atggccgacg agcacttctt ccccgccgga gattacttct cctccggcgc cgccacgggg 60
acgggcgcgt tgctgcccgc cgcgtcgtac gggatgatgc cgccgtgggc ggtggccgat 120
gaccagatga tgatgatggt gccagcggcg gcggagtccg tcgcgcactt cgactccgcg 180
ctcagctcgc tcgtgtcgtc gccgggtgga ggtggcgggc ttgtgaatgg caatggtgga 240
gggggtggtg atgagatggc ggccatcggc gacctgatcg ggcggctggg gagcatctgc 300
aacaacgggg ccagcgccaa caactcctgc tacagcacgc cactcagctc cccgccgcgc 360
ggcggcccgc ctccggtgac ggcgttccgt ggctacgccg ccgtggacac cggcaggctg 420
tccagggtct ccagcagcaa gtccctcggc gccggcgccg ccgccaccgc cgccgcattg 480
gacagctccg aggcggagat gagccccacc accgccgccg gtgaccaacc agccaagccc 540
tccgcctccg ccgccgccgc cgcccgcaag cgcaagtcct cggcgaagcc caaggcctcc 600
tcctcatcct tacccacggc tacggcagcg acgacgaacg cgagcccgaa gcggtccaag 660
gtcgtcgccg ccgccgccgg cggcggacac gacggcgacg gcgacgcggc gacgcaggag 720
gagaaacccg agccgaccaa agactacatc catgtgaggg cgaggagggg acaagccacc 780
gatagccata gcctcgccga gagggtgagg agggagagga taagcgagag gatgaagctg 840
ctgcagtcgc tcgtgccagg ctgcaacaag atcaccggca aggctctcat gctggacgag 900
atcatcaact atgtccagtc gctgcagcgt caggtcgagt ttttgtccat gaagttagcg 960
accatgaatc ctcagctgga ctttgacggc cattacatgc cttccaaaga tatgaaccac 1020
atgccagtac ccacataccc gtcaggcgac ccaaccaccg ccaccgtgtt ctcctacacc 1080
ggctctcctg ctactgccga tccattcaac ccctataact gttgggagct cgaccttcat 1140
accgcaatgc aaatgagagc cgccgccgcc accgggctca gccaagatgg cctagtggca 1200
gcgatggcat cctcgccatt gccacaccaa cctcctcacg gcttctatgg ggacgacatg 1260
aaggccgagc cgtaa 1275
<210> 4
<211> 1335
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 4
atggccgacg agcacttctt ccccgccgga gattacttct cctcctcctc cggcgccacg 60
gggacgggcg cgttactgcc cggcgggctg gacgtcgccg ccgcggcggc atacgggatg 120
atgccgccct gggcagtggc cgaccagatg atgatgatga tggtgccggc ggcgggggcg 180
gaggcggagt gcgttgcgca cttcgactcc gcgctcagct cgctcgtgtc gtctccgggt 240
ggaggtggcg ggcttgtgaa cggcaatggc ggcggctgcg gcgggggtga tgagatggcg 300
gccatcggcg acctgatcgg ccggctcggg agcatctgca acggcgccag cgccaacaac 360
tcctgctaca gcacgccgct cagctccccg ccgcgcggcg gcccgccgcc acctccgccg 420
ctgacggcgt tccgtggcta cgccgccgtg gacaccggca ggctgtcccg ggtctccagc 480
agcaagtccc tcggcgccgc cgcattggag agctccgagg cggagatgag ccccaccacg 540
gccgccggcg accaaccagc caagccctcc gccgccgcag ccgccgccgc ccgcaagcgc 600
aagtcctcag cgaaggccaa ggccacctcc tcctccttac ccacggctac ggcagcgacg 660
aatgcgagtc cgaagcggtc caaggtcgcc ggcggcggcg gtggcgacgg cgacggcgac 720
gcggcggcgg aggaggagaa gcccgagccg gccaaagact acatccatgt gagggcgagg 780
aggggacaag ccaccgatag ccacagcctc gccgagaggg tgaggaggga aaggataagc 840
gagaggatga agcttctgca gtcgctcgtg ccaggctgca acaagatcac cggcaaggct 900
ctaatgctgg acgagatcat caactatgtc cagtcgctgc agcgtcaggt cgagtttttg 960
tccatgaagt tggcgaccat gaatcctcag ctggactttg acggccatta tataacttcc 1020
aaagatacga gtcatatgcc aatgctcgca tacccgtcag gcgacctgac caccgccacc 1080
gcgttctcct ataccggctc acccgccgcc accgccgccg atccattcgc cgcctacaac 1140
tgctgggagc tcgtcgacct ccacaccaag atgcaaatag gagccaccac cactggcctc 1200
aaccaagatg gcccatcggt cgcagcgatg gcaccctcgc cttcaccacc attgccgcac 1260
catcctcctc acggcttcta cggggggcag aagcagcagg ggacgacagt aaaccacatg 1320
aaggccgagc cgtaa 1335
<210> 5
<211> 5064
<212> DNA
<213> wild rice (Oryza alta)
<400> 5
gatagtggca gtatatcttt tcttccgcgt tattaccgtg ctcgtgccgg catctcatct 60
cttcccaccc accaacacgg ttacttccct ccccttccca accatttctt atatataacg 120
gtcaaccacc gcctccctct ttccctctcc tctctcctct tcctccactc ccacccactc 180
tcccacgcgc cacgccgcca ccgatggccg acgagcactt cttccccgcc ggagattact 240
tctcctccgg cgccgccacg gggacgggcg cgttgctgcc cgccgcgtcg tacgggatga 300
tgccgccgtg ggcggtggcc gatgaccaga tgatgatgat ggtgccagcg gcggcggagt 360
ccgtcgcgca cttcgactcc gcgctcagct cgctcgtgtc gtcgccgggt ggaggtggcg 420
ggcttgtgaa tggcaatggt ggagggggtg gtgatgagat ggcggccatc ggcgacctga 480
tcgggcggct ggggagcatc tgcaacaacg gggccagcgc caacaactcc tgctacagca 540
cgccactcag ctccccgccg cgcggcggcc cgcctccggt gacggcgttc cgtggctacg 600
ccgccgtgga caccggcagg ctgtccaggg tctccagcag caagtccctc ggcgccggcg 660
ccgccgccac cgccgccgca ttggacagct ccgaggcgga gatgagcccc accaccgccg 720
ccggtgacca accagccaag ccctccgcct ccgccgccgc cgccgcccgc aagcgcaagt 780
cctcggcgaa gcccaaggcc tcctcctcat ccttacccac ggtaccatac tccgaccacc 840
gctccatcac ttctccgatc cccagctgac caacccataa taatgcaggc tacggcagcg 900
acgacgaacg cgagcccgaa gcggtccaag gtcgtcgccg ccgccgccgg cggcggacac 960
gacggcgacg gcgacgcggc gacgcaggag gagaaacccg agccgaccaa agactacatc 1020
catgtgaggg cgaggagggg acaagccacc gatagccata gcctcgccga gagggtaatt 1080
acctaatcaa ctaattaacc atcctctcct aattaaatcc taattagctt tttgcaagta 1140
cactaatccc caaattaatc acaatgcgcg gcacccccta attgcgcacc gttttactcc 1200
tacttgtcac taattgctct acttaattag taagttgcaa ggacgcttaa ttattaaaat 1260
ttaattagct tgtgttttgt ttaatggtag gtgaggaggg agaggataag cgagaggatg 1320
aagctgctgc agtcgctcgt gccaggctgc aacaaggtat gaacacagca ctctccagct 1380
gcaatctcat gcttaaattt tatccaaatt tatctatcca ttactccaat tttaaaattc 1440
tagccatctc tccatccatg ttactagcta gtttagagtt taatatcaaa atgtgcgaaa 1500
attttgtctc gaaaaatagt accaatttgt aatatcagaa atccgattta ttttacaatt 1560
acatagcggt actagaaatt agtggtcaaa aatgtattta agagaacgca cattaagggg 1620
gaatagtaac ctaacgtaca aaacggtctt acctgtgtgg acggagagaa cagtaattaa 1680
gtttaatata tatatataat tactttagtt tcagtattgc ctagagctag gagttggact 1740
ttttgctagt aggatagata aaattaagtg caattaatca attattttgt accgaaagta 1800
tgagcactaa ctgcggtggt tagtctacgc agccagtagt aattttgacc gtaatgcatt 1860
gtaagctacc agtagtactc ccaagttaag ctcccagtgg tccaagaaga tataataata 1920
attgattaat taataatctg agaggctctt gctctgtact taaactaatc aaaccggcta 1980
atcaattgca aggtcctggt ggtttaggtg gtgcgcacga ttattttagt tgccccaatt 2040
attgccacgg tagtgatgcc cctgccggtg gtcaaatttg ggttgaattt taaagttggt 2100
tgataacttt tatacctttt taaaaattat tgatcagttt ttttgctgga tgatcgttta 2160
ttgtctttta gcaaataaat atgaatgttg cggtgtgcag atcaccggca aggctctcat 2220
gctggacgag atcatcaact atgtccagtc gctgcagcgt caggtcgagg taccaatgca 2280
acatttgctt tagtagtgtg ctaaatgaac ttgttttaat gacaataaat ttgttggaga 2340
aaaatgttgt tgtgttctcc ttctgtccta gttagctctt aattgaagtt ctgtatgaaa 2400
ttaaacccaa taatagctaa attttggcat tggtgtgtct cacagttttt gtccatgaag 2460
ttagcgacca tgaatcctca gctggacttt gacggccatt acatgccttc caaagatgta 2520
agtagcatct ttcaatttgt tactaaaaga aaacaatgct atgtgatctg gatatcaaac 2580
ggttaagata gagtattatt cgatattgtc cctccatttg caaatgttat aacgaccgca 2640
ctcaccatat cattttcaga tgaaccacat gccagtaccc acatacccgt caggcgaccc 2700
aaccaccgcc accgtgttct cctacaccgg ctctcctgct actgccgatc cattcaaccc 2760
ctataactgt tgggagctcg accttcatac cgcaatgcaa atgagagccg ccgccgccac 2820
cgggctcagc caagatggcc tagtggcagc gatggcatcc tcgccattgc cacaccaacc 2880
tcctcacggc ttctatggca agtgaaacca aaccatcacc tctcctcgta accctaacaa 2940
atcatacata gacttttaaa atactcaaaa aaaaatcaaa acataagttt tttttttact 3000
agactacaat actggtcata ctactccagt agtactggta cggtaggttt gtttgtccaa 3060
gtttgttgag tttcgctgtt ggtggtaatt gggtgcaggg gacgacatga aggccgagcc 3120
gtaataaatg ggcgacctcc ttggccttcc cttctgtaca tacgccagcc gccgtacgtg 3180
tactccgctt ttctgctccc atcctgcagc atcagcatca gcagcagcag cagacccagc 3240
tcacaatcat tgccatcaaa gagaaagaag aggatttgtg tgtaatgctt catggcttga 3300
tgatggcttt ggctccctag cttcccttgc tcttcttctc actggatatg tgggccctct 3360
catatgtggc agcatcttct tttcaccttt ctcccctctg ccctctgcca ctgcaggtgg 3420
ggcccacctg catagggaag gagaaggttt ttcagatgca ttggtggcat gatgaagggg 3480
cacattgtca ttgtttatgc aagaacttgt ttgtgttgtg atgttgtagg acaagaggag 3540
tatgtgtgtg tttggaaatg gcaaggcagg ggagttgtgt gaccttttgt gtgtgctggt 3600
tgcatgccct aactgtagaa aaaaatggac gactgtggta gtgatgtagt ggtagtggct 3660
ttgtaggatt ggcatgcatg gggatgtatg tacttctgta tgtagagatt ggagagggtt 3720
ttgaagaaca ccttcctttt tggtgaacat tgtttgtatc aaaagtactg gaatcataat 3780
gcatgcaaga aatgtttttg aacaatattc gacaatgtcg ttagtatttt tgatgtggtt 3840
gtctatatta gtttagaatc ctttggtttg tcaaaagtta tccgcattac aatctggaag 3900
gatttaggat cttggggaca atgagaggat gagcgacaat attactatga ttatatatca 3960
cattcgcttc atctttcacc agtttttgca atagattcat gtgttgatcc ttgtcactag 4020
agcaattttt ttatcaatga actaaagata tatacccaat tgagccacaa agatgccatg 4080
gcctccatct gcattttgtt gtgacttctt aagaaattga tccatcatca tctgcatgtt 4140
gctatgactt ctggagaaat tgatccatca ttgatgcaga gtctgcatac gtactatgag 4200
gagtatgcaa taacttttag cttcttccaa atgatcggtc ggcaaaaaaa aacatgtgtt 4260
tcttgtgtca ctaataccat aattcatagg catgtcgacg attgtgctct tcctataacc 4320
atagctaacc cccctacaac caacacacaa ttaaagtgtt gaaccaacaa aatggtacta 4380
catcaataat gcatcaacct atgaaatgaa aagataactt cttcctttta ccagcattgg 4440
catttccaac caagatctcc ctagatgcac acaacatgat cagtgttaat catgggattc 4500
tctctaatca cctccacact ctcaaatcat tgtttcatct gttgccatat cctaatcaca 4560
gaaggcccca cagtgctttc tctctgtgga atctagccag tagggggagg gggcttgatc 4620
ccagctggca tgtgggcccc cacccacatc aacccttttg gatcttcttc ttcttcttct 4680
attctactcc tacatctctc tttcacattg cagctactag ctgacattgg agtacttgac 4740
aagtccttaa acaagtgcac ttttggggcc tttaattcag ttgtaatagt agtagtagaa 4800
gtaattaaat ttcttgttgt cttgtgtagc attttcttct tcatgtcttt gcccttcatt 4860
aataagtcaa gtgatgtgac aatggatgct ggaccctttt ttacctgcct ccctgaccgg 4920
ccttccttta tgcagacatc aagtcggtga gtaccaaagc agctcaactg taattctgtc 4980
attaagttgg tgattagtgc atgcaaattg tcattagcat cagtacagtt aggtgatgat 5040
taaattaaag tacagttgtg tgag 5064
<210> 6
<211> 5367
<212> DNA
<213> wild rice (Oryza alta)
<400> 6
ctataaattt actttaaaat atcacatctt aggtctactt agattgaaag gagagagtat 60
ttggttccgc gttattacgg ccggcatctc ttcccagttc ccacccacca atacggttac 120
ttccctcccc tttcccaaac gatttcttat ataacggtca accaccgccc ctctcttttc 180
cctctccgct ctcctcctcc actcccaccc actctcccac gcgccacgcc gccaccgccg 240
acgacgacga tggccgacga gcacttcttc cccgccggag attacttctc ctcctcctcc 300
ggcgccacgg ggacgggcgc gttactgccc ggcgggctgg acgtcgccgc cgcggcggca 360
tacgggatga tgccgccctg ggcagtggcc gaccagatga tgatgatgat ggtgccggcg 420
gcgggggcgg aggcggagtg cgttgcgcac ttcgactccg cgctcagctc gctcgtgtcg 480
tctccgggtg gaggtggcgg gcttgtgaac ggcaatggcg gcggctgcgg cgggggtgat 540
gagatggcgg ccatcggcga cctgatcggc cggctcggga gcatctgcaa cggcgccagc 600
gccaacaact cctgctacag cacgccgctc agctccccgc cgcgcggcgg cccgccgcca 660
cctccgccgc tgacggcgtt ccgtggctac gccgccgtgg acaccggcag gctgtcccgg 720
gtctccagca gcaagtccct cggcgccgcc gcattggaga gctccgaggc ggagatgagc 780
cccaccacgg ccgccggcga ccaaccagcc aagccctccg ccgccgcagc cgccgccgcc 840
cgcaagcgca agtcctcagc gaaggccaag gccacctcct cctccttacc cacggtacca 900
caacaaacac tgctccggcc accgccgctc catcacttct ccgatcccca gctgaccaac 960
ccataatgca ggctacggca gcgacgaatg cgagtccgaa gcggtccaag gtcgccggcg 1020
gcggcggtgg cgacggcgac ggcgacgcgg cggcggagga ggagaagccc gagccggcca 1080
aagactacat ccatgtgagg gcgaggaggg gacaagccac cgatagccac agcctcgccg 1140
agagggtact actacctaat taaccatcca ttatccccta attatctttt gcaagtacac 1200
taatccccaa attaatcaca atccgcggcc cccctaattg cgcaccgtgt tactacttgt 1260
cactaattgc tctacttaat taagttgcaa ggacacttaa ttattgttta acggtaggtg 1320
aggagggaaa ggataagcga gaggatgaag cttctgcagt cgctcgtgcc aggctgcaac 1380
aaggtatgaa cacaacactc tccagctgca atctctcatg cttaaatttc cttcaaattt 1440
atctatccat tactccaatt ttaaaattct agcaatcctc ctccatccat gttactagtt 1500
tagagtctaa tatcgaaatg tgcgaaaaag aattcctgaa aagtagtacc aatttgtaat 1560
attagaaacc cgctatattt tacgattata agcggtacta taaattagtc atcaaaatag 1620
tatttcggtg aacgcgcatt aagggagaat agtaacctaa catacaaaat ggacttacct 1680
gtgtggacgg agagaacaat aattaagttt aacatatata attactttag tttcagtatt 1740
gcctagagct aggagttgga ctttttgcta ctaggataga taaaattaag tacaaataat 1800
caattttttg taccggatgt atgagcacta actgcggtgg ttagtctaca cagccagtag 1860
taattttgac cgtaatgcat ctcctaggtt aagctcccaa tggtccaaga agatataata 1920
ataattgatt aattaataat ctgataggct cttgctctgc acttaaacta atcaaaccgg 1980
ctaatcaatt gcaaggtcct ggtggttttg gtggtgcgca cgattatttt agttgcccca 2040
attattgcca cggtagtgtg ccccagccgg tggtcaaatt tgggttgaat tttaaatttg 2100
gttgataact tttctacctt tttaaaaatt attgttgagt tttttttgtt ggatgattgt 2160
tcattgtttt tgtttagtca atgtgaatgt tgcggtgtgc agatcaccgg caaggctcta 2220
atgctggacg agatcatcaa ctatgtccag tcgctgcagc gtcaggtcga ggtaccaatg 2280
caacattgct ctaatagtgt gctaaatgaa cttgttttaa tgacaataat tcgttggaga 2340
aaattgttgt tgtgtgctcc ttctgtccta gactagctct taattgaagt tttgtatgga 2400
accaaatagc taaattttaa cattttgaca ttggtgtgtc tcatagtttt tgtccatgaa 2460
gttggcgacc atgaatcctc agctggactt tgacggccat tatataactt ccaaagatgt 2520
aagtagtatc ttcaatttgt tacgtactaa aagagaaaac atttgatatc tggacacaaa 2580
caaacattgc cactatgttt ttccctcaat ttgcaaatgt tataacgacc gtaattaccc 2640
ctatcatttt cagacgagtc atatgccaat gctcgcatac ccgtcaggcg acctgaccac 2700
cgccaccgcg ttctcctata ccggctcacc cgccgccacc gccgccgatc cattcgccgc 2760
ctacaactgc tgggagctcg tcgacctcca caccaagatg caaataggag ccaccaccac 2820
tggcctcaac caagatggcc catcggtcgc agcgatggca ccctcgcctt caccaccatt 2880
gccgcaccat cctcctcacg gcttctacgg caagtgaaac caaaccacca gatcttctca 2940
tatccttaaa aaaagattaa aacatacatt ctctatttca aagtattgct acctagtaca 3000
tgattggaca ctttctagta caacgaatct aaatagagaa cctatctaga tgcgtctgta 3060
tcgctccctt catcccaaat tatagtatac ccttattttt agaaaaatca aactcggtaa 3120
cttttgacta ataatcattc taacaatatc tataagaagt attatgcgtg ctatatcact 3180
agatttatat ttcaaattag ttttatatga tactaatttt atatctattg gtaacgtaac 3240
attaaataaa ttaatggtca aaatatgtca ttgaagaccg tgtaaaaaat ttataagact 3300
tataattaaa caaagtaagt aagaaatgtt caatgttaac attttaggac agagatagta 3360
cgctgttttt tctctgtggt actggaccat agtagtggtc atggtgtagg tttgtttgtc 3420
caagtttgtt gagtttcgct gttggtggta attgggcgca ggggggcaga agcagcaggg 3480
gacgacagta aaccacatga aggccgagcc gtaataaatg cgcgacctcc ttcgccttcc 3540
ttctgtacat acgccagccg ccgtacgtac tccgcttttc tgctcccatc ctgcagcatc 3600
agcatcagca gcagcaaacc cagctcacaa tcattgccat caaagagaag aagaggatgt 3660
gtgcttggct ccctcctcct cctccctctc actggatatg tgggccctct catatgtggc 3720
agcatctttt tccccccctt tctccccctc tgccctctgt cactgcaggt ggggcccgtc 3780
tgcataggga aggagaaggt ttttcaggct caactttttc agatgcattg gcatgcaggc 3840
aacattgtca ttgtttagca aggactgtag aaaagccagg ggagctgtga ccattgtgtg 3900
tgctggttgc atgccctaac tgtagaaaag gaggactgtg gcttggtagg attggcatgc 3960
atggggatgt atgtactatt atgtatgtag agattggaga gggttttgag gaacaccttc 4020
ctttttgggg ggtgaacatt gtttgtatca gaagtaccga aatcatcgcg catgcaagaa 4080
atgtctttga tcaataaccg acgatgtcgt tagtattttt gatgtggttg tctatgttag 4140
ttcagaattc tttgtttgtc aaaagttatc tgtgttataa tctagacggg tttaggattt 4200
tgggaacaac tagaggatga gcgataatat tattatgatt atatatccta ttcgcttcat 4260
cattcaccag tttttgcaat agattcctgt gttgatcctt gtcattggag caaatttttt 4320
gtcaatgaac taaagatata tacccaattg agccacaacg atgccatggc cttcatctgc 4380
attttgttat gacttcttaa gaaattgatc catcattgat gcagagagtc tgcatatgta 4440
ctatgaggag tatacaataa tttttacctt cttccaaatg atcgatcagc taaaaaagaa 4500
catgtgtttt ctatgtcact aataccatag ttcataggca tgtaggtgat tgtgcgcttc 4560
gtagaaccat agctaatccc cctacaacca acacacagta gaagtgttga accaacaaaa 4620
aatggtacta catgaataat gcatcaacct aatgaaatga aaagataact tcttctcttt 4680
ttttttacca gcattggcat ttccaaccaa gatctcccta gatgcacaca acatgatcag 4740
tgttaatcat gggcttccct ctaatcacct cctcactctc aatcattgtt tcatccgttg 4800
ccatatccta atcacagcag ggccccacag tgctttctct ctgtggaatc tagccagtag 4860
gggggagggg acttgatccc agctggcatg tgggccccac ccacatcaac ccttttggat 4920
cttcttcttc ttctattcta ctcctgcatc tctctttcac attgcagcta ctattagctg 4980
acattggagt acttgacaag tccttgaaca agtgcacttt tggggccttt aattcagttg 5040
tggtggtagt agagataatt aaatttcttg ttgtcttgtg aggcacttac ttgttcatgt 5100
ctttgccctt cattaagtca agtgatgtga caatggatgc tggacccttt tttacctgcc 5160
tccctgaccg gccttccttt atgcagacat caagtcggtg agtaccaagc agctcaactg 5220
taattctgtc attaagttgt tgattagtgc atgcaaattg tcattagcat cagtacagtt 5280
aagagaggat tagattaaag tacagttgtg tgagatgcta actactgatt agagaggtgt 5340
taatttgggg attaaggcaa ggctggc 5367
<210> 7
<211> 20
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 7
ccgaagcggt ccaaggtcgc 20
<210> 8
<211> 20
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 8
acatccatgt gagggcgagg 20

Claims (10)

1. The application is characterized in that: the application of the OaAn-1 protein in regulating and controlling the rice awn length or the application in preparing a product for regulating and controlling the rice awn length,
the OaAn-1 protein is a1) or a2) or a3) protein as follows:
a1) the amino acid sequence is protein shown as SEQ ID No.1 or SEQ ID No.2 in the sequence table;
a2) the protein with the same biological function is obtained by substituting and/or deleting and/or adding one or more amino acid residues in the amino acid sequence shown in SEQ ID No.1 or SEQ ID No.2 in the sequence table;
a3) protein which has 80% or more than 80% of identity with the amino acid sequence limited by SEQ ID No.1 or SEQ ID No.2 in the sequence table, is derived from rice and has the same biological function.
2. The application is characterized in that: the application of the Oaan-1 coding gene in regulating rice awn length or the application in preparing rice awn length products,
the OaAn-1 protein coding gene is a DNA molecule shown as c1) or c2) or c3) or c 4):
c1) the coding sequence is a DNA molecule shown in SEQ ID No.3 or SEQ ID No.4 in a sequence table;
c2) the nucleotide sequence is a DNA molecule shown as SEQ ID No.5 or SEQ ID No.6 in the sequence table;
c3) a DNA molecule which has 90 percent or more than 90 percent of identity with the nucleotide sequence limited by c1) or c2), is derived from rice and encodes the OaAn-1 protein;
c4) a DNA molecule which is hybridized with the nucleotide sequence limited by c1) or c2) under strict conditions and codes the OaAn-1 protein.
3. The application is characterized in that: the use of a biological material related to the Oaan-1 protein of claim 1 for regulating rice stem length or for preparing a product for regulating rice stem length,
the biological material is any one of the following C1) to C6) and D1) to D7):
C1) an expression cassette containing the OaAn-1 protein coding gene;
C2) a recombinant vector containing the gene encoding the OaAn-1 protein, or a recombinant vector containing the expression cassette of C1);
C3) a recombinant microorganism containing a gene encoding said OaAn-1 protein, or a recombinant microorganism containing C1) said expression cassette, or a recombinant microorganism containing C2) said recombinant vector;
C4) a transgenic plant cell line containing the gene encoding the OaAn-1 protein, or a transgenic plant cell line containing the expression cassette of C1);
C5) transgenic plant tissue containing the gene encoding the OaAn-1 protein, or transgenic plant tissue containing the expression cassette of C1);
C6) a transgenic plant organ containing said gene encoding an OaAn-1 protein, or a transgenic plant organ containing C1) said expression cassette;
D1) a nucleic acid molecule that inhibits or reduces the expression of a gene encoding said OaAn-1 protein;
D2) an expression cassette comprising the nucleic acid molecule of D1);
D3) a recombinant vector containing the nucleic acid molecule of D1) or a recombinant vector containing the expression cassette of D2);
D4) a recombinant microorganism containing D1) the nucleic acid molecule, or a recombinant microorganism containing D2) the expression cassette, or a recombinant microorganism containing D3) the recombinant vector;
D5) a transgenic plant cell line comprising D1) the nucleic acid molecule or a transgenic plant cell line comprising the expression cassette of D2);
D6) transgenic plant tissue comprising the nucleic acid molecule of D1) or transgenic plant tissue comprising the expression cassette of D2);
D7) a transgenic plant organ containing D1) the nucleic acid molecule or a transgenic plant organ containing D2) the expression cassette.
4. A method for shortening the awn length of rice is characterized in that: comprising reducing the content and/or activity of the OaAn-1 protein in the rice as claimed in claim 1 and/or reducing or inhibiting the expression level of the OaAn-1 protein coding gene in the rice as claimed in claim 2, thereby shortening the awn length of the rice.
5. The method of claim 4, wherein: comprising introducing into said rice a substance which reduces or inhibits the expression of said OaAn-1 protein-encoding gene.
6. The method of claim 5, wherein: the substance which reduces or inhibits the expression of the gene encoding the OaAn-1 protein is any one of the biomaterials D1) -D4) of claim 3.
7. The method of claim 6, wherein:
D1) the nucleic acid molecule is a DNA molecule for expressing a gRNA targeting the OaAn-1 protein coding gene or a gRNA targeting the OaAn-1 protein coding gene;
the target sequence of gRNA of the OaAn-1 protein coding gene is shown as SEQ ID No.7 and/or SEQ ID No. 8.
8. The method of claim 1, wherein:
the method for reducing the content and/or the activity of the OaAn-1 protein in the plant and/or reducing or inhibiting the expression level of the OaAn-1 protein coding gene in the plant comprises the step of carrying out at least one mutation on the OaAn-1 protein coding gene shown in SEQ ID No.5 or SEQ ID No.6 in a rice genome, wherein the mutation is carried out on the gene:
1) inserting a nucleotide T between 17 th and 18 th nucleotides in a target point SEQ ID No.8 of the Oaan-1 protein coding gene shown in SEQ ID No.5 in a rice genome, or deleting a G;
2) a nucleotide T is inserted between the 17 th to 18 th nucleotides in the target point SEQ ID No.7 of the Oaan-1 protein coding gene shown in the SEQ ID No.6 in the rice genome or a nucleotide A is inserted and/or a nucleotide T is inserted between the 17 th to 18 th nucleotides in the target point SEQ ID No.8 or a G is deleted.
9. Protein or biological material related to said protein, characterized in that: the protein is the OaAn-1 protein of claim 1.
10. A nucleic acid molecule characterized by: the nucleic acid molecule is the OaAn-1 protein coding gene in claim 2.
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Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN114213515A (en) * 2021-12-09 2022-03-22 湖南农业大学 Gene OsR498G0917707800.01 and application of protein coded by same in regulation of rice chalkiness

Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2005185101A (en) * 2002-05-30 2005-07-14 National Institute Of Agrobiological Sciences VEGETABLE FULL-LENGTH cDNA AND UTILIZATION THEREOF
CN101921321A (en) * 2010-04-12 2010-12-22 中国科学院遗传与发育生物学研究所 Protein IPA1 relevant with plant types and coding gene and applications thereof
CN103502456A (en) * 2011-02-28 2014-01-08 巴斯夫植物科学有限公司 Plants having enhanced yield-related traits and producing methods thereof
CN104278051A (en) * 2013-07-09 2015-01-14 中国科学院上海生命科学研究院 Regulation and control gene of awn, grain length and number of grain per ear and application thereof

Patent Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2005185101A (en) * 2002-05-30 2005-07-14 National Institute Of Agrobiological Sciences VEGETABLE FULL-LENGTH cDNA AND UTILIZATION THEREOF
CN101921321A (en) * 2010-04-12 2010-12-22 中国科学院遗传与发育生物学研究所 Protein IPA1 relevant with plant types and coding gene and applications thereof
CN103502456A (en) * 2011-02-28 2014-01-08 巴斯夫植物科学有限公司 Plants having enhanced yield-related traits and producing methods thereof
CN104278051A (en) * 2013-07-09 2015-01-14 中国科学院上海生命科学研究院 Regulation and control gene of awn, grain length and number of grain per ear and application thereof

Non-Patent Citations (4)

* Cited by examiner, † Cited by third party
Title
GENBANK: "hypothetical protein E2562_031410 [Oryza meyeriana var. granulata]", 《GENBANK》 *
HONG YU等: "A route to de novo domestication of wild allotetraploid rice", 《CELL》 *
JIANGHONG LUO等: "An-1 Encodes a Basic Helix-Loop-Helix Protein That Regulates Awn Development, Grain Size, and Grain Number in Rice", 《THE PLANT CELL》 *
王军等: "基于染色体单片段代换系的水稻芒性QTL定位", 《华北农学报》 *

Cited By (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN114213515A (en) * 2021-12-09 2022-03-22 湖南农业大学 Gene OsR498G0917707800.01 and application of protein coded by same in regulation of rice chalkiness
CN114213515B (en) * 2021-12-09 2024-03-22 湖南农业大学 Gene OsR498G0917707800.01 and application of encoded protein in regulation of rice chalkiness

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