CN109843435A - 用于细菌群落关系确定和其他高通量微生物学应用的高分辨率系统、试剂盒、设备和方法 - Google Patents

用于细菌群落关系确定和其他高通量微生物学应用的高分辨率系统、试剂盒、设备和方法 Download PDF

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CN109843435A
CN109843435A CN201780059848.3A CN201780059848A CN109843435A CN 109843435 A CN109843435 A CN 109843435A CN 201780059848 A CN201780059848 A CN 201780059848A CN 109843435 A CN109843435 A CN 109843435A
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micropore
cell
microorganism
sample
biological entities
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P·克里斯蒂
A·哈洛克
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General Automation Experiment Technology Co
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    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
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    • B01L3/5085Rigid containers without fluid transport within for multiple samples, e.g. microtitration plates
    • BPERFORMING OPERATIONS; TRANSPORTING
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    • B01L2300/0893Geometry, shape and general structure having a very large number of wells, microfabricated wells
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    • C40BCOMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
    • C40B20/00Methods specially adapted for identifying library members
    • C40B20/02Identifying library members by their fixed physical location on a support or substrate

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  • Hematology (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
CN201780059848.3A 2016-09-28 2017-09-28 用于细菌群落关系确定和其他高通量微生物学应用的高分辨率系统、试剂盒、设备和方法 Pending CN109843435A (zh)

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US201662400841P 2016-09-28 2016-09-28
US62/400,841 2016-09-28
PCT/US2017/054108 WO2018064385A1 (en) 2016-09-28 2017-09-28 High resolution systems, kits, apparatus, and methods for bacterial community relationship determination and other high throughput microbiology applications

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EP (1) EP3519096A4 (https=)
JP (1) JP2019531730A (https=)
CN (1) CN109843435A (https=)
AU (1) AU2017335897A1 (https=)
CA (1) CA3037631A1 (https=)
IL (1) IL265540A (https=)
WO (1) WO2018064385A1 (https=)

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CN111483096A (zh) * 2019-12-10 2020-08-04 中国科学院亚热带农业生态研究所 根际通道微流控芯片及其胶体块和一种制造胶体块的模具
CN114207448A (zh) * 2019-06-07 2022-03-18 蜂巢生物技术公司 用于收集、储存和分析生物样品的细胞盒
CN115197840A (zh) * 2022-08-17 2022-10-18 厦门大学 一种基于数字微流控技术的单细菌基因组测序方法

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CA3185619A1 (en) * 2020-05-29 2021-12-02 Riken Method for treating cell population and method for analyzing genes included in cell population
EP3939699A1 (en) * 2020-07-17 2022-01-19 Biomillenia SAS Growth modulation
WO2024135694A1 (ja) * 2022-12-23 2024-06-27 ペプチドリーム株式会社 Pcrを用いたdnaの増幅方法

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Publication number Priority date Publication date Assignee Title
CN114207448A (zh) * 2019-06-07 2022-03-18 蜂巢生物技术公司 用于收集、储存和分析生物样品的细胞盒
CN111483096A (zh) * 2019-12-10 2020-08-04 中国科学院亚热带农业生态研究所 根际通道微流控芯片及其胶体块和一种制造胶体块的模具
CN111483096B (zh) * 2019-12-10 2022-04-08 中国科学院亚热带农业生态研究所 根际通道微流控芯片及其胶体块和一种制造胶体块的模具
CN115197840A (zh) * 2022-08-17 2022-10-18 厦门大学 一种基于数字微流控技术的单细菌基因组测序方法

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JP2019531730A (ja) 2019-11-07
IL265540A (en) 2019-05-30
WO2018064385A1 (en) 2018-04-05
AU2017335897A1 (en) 2019-04-04
CA3037631A1 (en) 2018-04-05
EP3519096A1 (en) 2019-08-07
EP3519096A4 (en) 2020-06-17

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Application publication date: 20190604