EP3519096A4 - High resolution systems, kits, apparatus, and methods for bacterial community relationship determination and other high throughput microbiology applications - Google Patents
High resolution systems, kits, apparatus, and methods for bacterial community relationship determination and other high throughput microbiology applications Download PDFInfo
- Publication number
- EP3519096A4 EP3519096A4 EP17857449.7A EP17857449A EP3519096A4 EP 3519096 A4 EP3519096 A4 EP 3519096A4 EP 17857449 A EP17857449 A EP 17857449A EP 3519096 A4 EP3519096 A4 EP 3519096A4
- Authority
- EP
- European Patent Office
- Prior art keywords
- kits
- methods
- relationship determination
- bacterial community
- high resolution
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Withdrawn
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
- C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
-
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L3/00—Containers or dishes for laboratory use, e.g. laboratory glassware; Droppers
- B01L3/02—Burettes; Pipettes
- B01L3/0241—Drop counters; Drop formers
- B01L3/0244—Drop counters; Drop formers using pins
-
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L3/00—Containers or dishes for laboratory use, e.g. laboratory glassware; Droppers
- B01L3/50—Containers for the purpose of retaining a material to be analysed, e.g. test tubes
- B01L3/508—Containers for the purpose of retaining a material to be analysed, e.g. test tubes rigid containers not provided for above
- B01L3/5085—Containers for the purpose of retaining a material to be analysed, e.g. test tubes rigid containers not provided for above for multiple samples, e.g. microtitration plates
-
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L3/00—Containers or dishes for laboratory use, e.g. laboratory glassware; Droppers
- B01L3/54—Labware with identification means
- B01L3/545—Labware with identification means for laboratory containers
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
- C12Q1/6837—Enzymatic or biochemical coupling of nucleic acids to a solid phase using probe arrays or probe chips
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
-
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01J—CHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
- B01J2219/00—Chemical, physical or physico-chemical processes in general; Their relevant apparatus
- B01J2219/00274—Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
- B01J2219/00277—Apparatus
- B01J2219/00279—Features relating to reactor vessels
- B01J2219/00306—Reactor vessels in a multiple arrangement
- B01J2219/00313—Reactor vessels in a multiple arrangement the reactor vessels being formed by arrays of wells in blocks
- B01J2219/00315—Microtiter plates
- B01J2219/00317—Microwell devices, i.e. having large numbers of wells
-
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01J—CHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
- B01J2219/00—Chemical, physical or physico-chemical processes in general; Their relevant apparatus
- B01J2219/00274—Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
- B01J2219/00718—Type of compounds synthesised
- B01J2219/0072—Organic compounds
- B01J2219/0074—Biological products
- B01J2219/00743—Cells
-
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L2200/00—Solutions for specific problems relating to chemical or physical laboratory apparatus
- B01L2200/02—Adapting objects or devices to another
- B01L2200/025—Align devices or objects to ensure defined positions relative to each other
-
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L2200/00—Solutions for specific problems relating to chemical or physical laboratory apparatus
- B01L2200/06—Fluid handling related problems
- B01L2200/0689—Sealing
-
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L2200/00—Solutions for specific problems relating to chemical or physical laboratory apparatus
- B01L2200/12—Specific details about manufacturing devices
-
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L2200/00—Solutions for specific problems relating to chemical or physical laboratory apparatus
- B01L2200/14—Process control and prevention of errors
- B01L2200/141—Preventing contamination, tampering
-
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L2300/00—Additional constructional details
- B01L2300/02—Identification, exchange or storage of information
- B01L2300/021—Identification, e.g. bar codes
-
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L2300/00—Additional constructional details
- B01L2300/06—Auxiliary integrated devices, integrated components
- B01L2300/0627—Sensor or part of a sensor is integrated
- B01L2300/0636—Integrated biosensor, microarrays
-
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L2300/00—Additional constructional details
- B01L2300/06—Auxiliary integrated devices, integrated components
- B01L2300/0681—Filter
-
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L2300/00—Additional constructional details
- B01L2300/08—Geometry, shape and general structure
- B01L2300/0809—Geometry, shape and general structure rectangular shaped
- B01L2300/0829—Multi-well plates; Microtitration plates
-
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L2300/00—Additional constructional details
- B01L2300/08—Geometry, shape and general structure
- B01L2300/0893—Geometry, shape and general structure having a very large number of wells, microfabricated wells
-
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L2300/00—Additional constructional details
- B01L2300/16—Surface properties and coatings
- B01L2300/161—Control and use of surface tension forces, e.g. hydrophobic, hydrophilic
- B01L2300/165—Specific details about hydrophobic, oleophobic surfaces
-
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L7/00—Heating or cooling apparatus; Heat insulating devices
- B01L7/52—Heating or cooling apparatus; Heat insulating devices with provision for submitting samples to a predetermined sequence of different temperatures, e.g. for treating nucleic acid samples
-
- C—CHEMISTRY; METALLURGY
- C40—COMBINATORIAL TECHNOLOGY
- C40B—COMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
- C40B20/00—Methods specially adapted for identifying library members
- C40B20/02—Identifying library members by their fixed physical location on a support or substrate
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Health & Medical Sciences (AREA)
- Organic Chemistry (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Analytical Chemistry (AREA)
- Zoology (AREA)
- Engineering & Computer Science (AREA)
- Wood Science & Technology (AREA)
- General Health & Medical Sciences (AREA)
- Immunology (AREA)
- General Engineering & Computer Science (AREA)
- Microbiology (AREA)
- Biotechnology (AREA)
- Physics & Mathematics (AREA)
- Biochemistry (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Molecular Biology (AREA)
- Biophysics (AREA)
- Genetics & Genomics (AREA)
- Clinical Laboratory Science (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Hematology (AREA)
- Apparatus Associated With Microorganisms And Enzymes (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Applications Claiming Priority (2)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US201662400841P | 2016-09-28 | 2016-09-28 | |
PCT/US2017/054108 WO2018064385A1 (en) | 2016-09-28 | 2017-09-28 | High resolution systems, kits, apparatus, and methods for bacterial community relationship determination and other high throughput microbiology applications |
Publications (2)
Publication Number | Publication Date |
---|---|
EP3519096A1 EP3519096A1 (en) | 2019-08-07 |
EP3519096A4 true EP3519096A4 (en) | 2020-06-17 |
Family
ID=61760120
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
EP17857449.7A Withdrawn EP3519096A4 (en) | 2016-09-28 | 2017-09-28 | High resolution systems, kits, apparatus, and methods for bacterial community relationship determination and other high throughput microbiology applications |
Country Status (7)
Country | Link |
---|---|
EP (1) | EP3519096A4 (en) |
JP (1) | JP2019531730A (en) |
CN (1) | CN109843435A (en) |
AU (1) | AU2017335897A1 (en) |
CA (1) | CA3037631A1 (en) |
IL (1) | IL265540A (en) |
WO (1) | WO2018064385A1 (en) |
Families Citing this family (4)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN111483096B (en) * | 2019-12-10 | 2022-04-08 | 中国科学院亚热带农业生态研究所 | Rhizosphere channel micro-fluidic chip, colloidal block thereof and mold for manufacturing colloidal block |
WO2021241721A1 (en) * | 2020-05-29 | 2021-12-02 | 国立研究開発法人理化学研究所 | Method for treating cell population and method for analyzing genes included in cell population |
EP3939699A1 (en) * | 2020-07-17 | 2022-01-19 | Biomillenia SAS | Growth modulation |
WO2024135694A1 (en) * | 2022-12-23 | 2024-06-27 | ペプチドリーム株式会社 | Dna amplification method using pcr |
Citations (4)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO2005010169A2 (en) * | 2003-07-23 | 2005-02-03 | Diversa Corporation | High throughput or capillary-based screening for a bioactivity or biomolecule |
EP2805769A1 (en) * | 2013-05-24 | 2014-11-26 | European Molecular Biology Laboratory | Methods for nano-scale single cell analysis |
US20160010085A1 (en) * | 2013-03-07 | 2016-01-14 | Snu R&Db Foundation | Heterologous dna barcoding method |
WO2016138496A1 (en) * | 2015-02-27 | 2016-09-01 | Cellular Research, Inc. | Spatially addressable molecular barcoding |
Family Cites Families (13)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO1998045406A1 (en) * | 1997-04-09 | 1998-10-15 | Minnesota Mining And Manufacturing Company | Method and devices for partitioning biological sample liquids into microvolumes |
WO2003044484A2 (en) * | 2001-11-16 | 2003-05-30 | Sloan-Kettering Institute For Cancer Research | High-density cell microarrays for parallel functional determinations |
CN1313622C (en) * | 2002-08-02 | 2007-05-02 | 赵翀 | High-flux cell biological chip testing technology and reagent case |
CN1444043A (en) * | 2002-12-25 | 2003-09-24 | 帕弗瑞生物技术(北京)有限公司 | Individuation specific immunocytofunction determination method |
JPWO2005090549A1 (en) * | 2004-03-19 | 2008-02-07 | ジェノミディア株式会社 | Microwell for cell culture |
CN1920559A (en) * | 2005-08-24 | 2007-02-28 | 赵翀 | Cellular biological technique, reagent kits and preparation device |
PL2007910T3 (en) * | 2006-03-31 | 2017-04-28 | Mobidiag Oy | Method and microarray for detecting herpesviruses |
EP4357493A3 (en) * | 2013-06-27 | 2024-07-24 | 10X Genomics, Inc. | Compositions and methods for sample processing |
US10633714B2 (en) * | 2013-07-21 | 2020-04-28 | Pendulum Therapeutics, Inc. | Methods and systems for microbiome characterization, monitoring and treatment |
ES2711168T3 (en) * | 2013-08-28 | 2019-04-30 | Becton Dickinson Co | Massive parallel analysis of individual cells |
WO2015112352A2 (en) * | 2014-01-25 | 2015-07-30 | uBiome, Inc. | Method and system for microbiome analysis |
US20190102512A1 (en) * | 2014-11-17 | 2019-04-04 | Yeda Research And Development Co., Ltd. | Method of analyzing microbiome |
CA3184363C (en) * | 2015-04-21 | 2024-01-02 | Isolation Bio Inc. | High resolution systems, kits, apparatus, and methods for high throughput microbiology applications |
-
2017
- 2017-09-28 WO PCT/US2017/054108 patent/WO2018064385A1/en unknown
- 2017-09-28 CN CN201780059848.3A patent/CN109843435A/en active Pending
- 2017-09-28 EP EP17857449.7A patent/EP3519096A4/en not_active Withdrawn
- 2017-09-28 CA CA3037631A patent/CA3037631A1/en not_active Abandoned
- 2017-09-28 AU AU2017335897A patent/AU2017335897A1/en not_active Abandoned
- 2017-09-28 JP JP2019516965A patent/JP2019531730A/en active Pending
-
2019
- 2019-03-21 IL IL265540A patent/IL265540A/en unknown
Patent Citations (4)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO2005010169A2 (en) * | 2003-07-23 | 2005-02-03 | Diversa Corporation | High throughput or capillary-based screening for a bioactivity or biomolecule |
US20160010085A1 (en) * | 2013-03-07 | 2016-01-14 | Snu R&Db Foundation | Heterologous dna barcoding method |
EP2805769A1 (en) * | 2013-05-24 | 2014-11-26 | European Molecular Biology Laboratory | Methods for nano-scale single cell analysis |
WO2016138496A1 (en) * | 2015-02-27 | 2016-09-01 | Cellular Research, Inc. | Spatially addressable molecular barcoding |
Non-Patent Citations (3)
Title |
---|
J.DAISY VANITHA ET AL: "Evaluation of microplate Alamar blue assay for drug susceptibility testing of Mycobacterium avium complex isolates", DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE, vol. 49, no. 3, 1 July 2004 (2004-07-01), AMSTERDAM, NL, pages 179 - 182, XP055288738, ISSN: 0732-8893, DOI: 10.1016/j.diagmicrobio.2004.04.003 * |
LIANG MA ET AL: "Gene-targeted microfluidic cultivation validated by isolation of a gut bacterium listed in Human Microbiome Project's Most Wanted taxa", PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES, vol. 111, no. 27, 25 June 2014 (2014-06-25), US, pages 9768 - 9773, XP055362053, ISSN: 0027-8424, DOI: 10.1073/pnas.1404753111 * |
See also references of WO2018064385A1 * |
Also Published As
Publication number | Publication date |
---|---|
JP2019531730A (en) | 2019-11-07 |
EP3519096A1 (en) | 2019-08-07 |
CA3037631A1 (en) | 2018-04-05 |
CN109843435A (en) | 2019-06-04 |
WO2018064385A1 (en) | 2018-04-05 |
IL265540A (en) | 2019-05-30 |
AU2017335897A1 (en) | 2019-04-04 |
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RIN1 | Information on inventor provided before grant (corrected) |
Inventor name: HALLOCK, ALEXANDER Inventor name: CHRISTEY, PETER |
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A4 | Supplementary search report drawn up and despatched |
Effective date: 20200514 |
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RIC1 | Information provided on ipc code assigned before grant |
Ipc: C12Q 1/689 20180101ALI20200508BHEP Ipc: B01L 3/00 20060101ALI20200508BHEP Ipc: B01L 7/00 20060101ALI20200508BHEP Ipc: C40B 60/14 20060101ALI20200508BHEP Ipc: C40B 20/02 20060101ALI20200508BHEP Ipc: C12Q 1/6869 20180101ALI20200508BHEP Ipc: C12Q 1/6837 20180101ALI20200508BHEP Ipc: B01L 3/02 20060101AFI20200508BHEP |
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