CN109097385A - A kind of production beta carotene hydrogenlike silicon ion engineered strain and its construction method - Google Patents
A kind of production beta carotene hydrogenlike silicon ion engineered strain and its construction method Download PDFInfo
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Abstract
The invention discloses a kind of production beta carotene hydrogenlike silicon ion engineered strain and its construction method, this method optimizes the lycopene cyclase gene crtY in pantoea agglomerans source firstPaCodon, obtain opt crtYPaGene, then with the opt crtY of the prrnB containing promoterPaFour step dehydrogenase gene crtI of gene and the phytoene in pantoea agglomerans sourcePaThe endogenous three step dehydrogenase gene crtI of phytoene of the seamless replacement hydrogenlike silicon ion of gene3Hydrogenlike silicon ion endogenous neurosporene hydroxylation enzyme gene crtC and glucose-6-phosphate dehydrogenase gene zwf are knocked out again, 1- deoxy-D-xylulose sugar -5- phosphate synthase gene dxs finally endogenous in the position integrant expression hydrogenlike silicon ion for knocking out zwf, it obtains producing beta carotene hydrogenlike silicon ion engineering bacteria, the fermented culture of the bacterial strain, the content of beta carotene is up to 30mg/g DCW.
Description
Technical field
The invention belongs to metabolic engineering technology fields, and in particular to a kind of to be constructed using metabolic engineering hydrogenlike silicon ion
The method for producing beta carotene bacterial strain.
Background technique
Beta carotene is widely present in the green vegetables such as carrot, fructus lycii and yellow, orange fruit, due to its insatiable hunger
And structure, make it that there is stronger antioxidant activity and remove the ability of free radical, the immune function of body can be effectively improved,
The fields such as functional food, medicines and health protection and cosmetics have been widely used in it at present, international market demand increasingly expands.
Natural beta-carotin is mainly derived from plant extract and microbial fermentation, but the beta carotene production of plant origin
Cost remains high because being limited by raw material, and chemically synthesized beta carotene is mostly that alltrans structure, bioactivity are low
And safety is by query.Microbe fermentation method due to being easy to extensive sustainable production, environmental-friendly and at low cost etc. characteristics,
And with the fast development of modern metabolic engineering technology, inexorable trend is had become using microbial fermentation production beta carotene.
Currently, the bacterial strain for being uniquely used for industrialized production beta carotene is Blakeslea trispora (Blakeslea
Trispora), but Blakeslea trispora lacks effective molecule manipulation technology, and its thallus is divided into positive and negative bacterium, and metabolic regulation is multiple
Miscellaneous, there is also many problems in fermentation, unstable if zymotechnique is more complex, period length etc..Hydrogenlike silicon ion
Platform cell production beta carotene (Rhodobacter sphaeroides) new as one has many inherent advantages:
(1) hydrogenlike silicon ion belongs to photosynthetic bacteria, has photosynthesis gene cluster, there is 7 carotenogenic genes above, according to
Coded sequence is followed successively by crtF, crtE, crtD, crtC, crtB, crtI and crtA, this almost meets the biology of beta carotene
Synthesis;(2) hydrogenlike silicon ion has endomembrane system abundant, is very beneficial for fat-soluble compound beta carotene in cell membrane
On accumulation, while under dark condition, cell membrane is easy to happen fold invagination, considerably increases beta carotene in cell
Accumulation on film;(3) genetic manipulation method of hydrogenlike silicon ion is mature, is successfully used for ubiquinone at present10, fatty acid and 5- ammonia
The large scale fermentation of the high added values native compound such as base levulic acid produces, and is produced further to explore using hydrogenlike silicon ion
Beta carotene is laid a good foundation;(4) hydrogenlike silicon ion itself can synthesize carotenoid under anaerobism illumination condition, and
Fermentation costs will be greatlyd save using anaerobism photo fermentation production beta carotene!
Summary of the invention
Technical problem to be solved by the present invention lies in provide it is a kind of produce beta carotene hydrogenlike silicon ion engineered strain with
And the construction method of the bacterial strain.
It solves hydrogenlike silicon ion engineered strain used by above-mentioned technical problem to construct to obtain by following methods: optimize first
The lycopene cyclase gene crtY in pantoea agglomerans sourcePaCodon, obtain opt crtYPaGene, then with containing starting
The opt crtY of sub- prrnBPaFour step dehydrogenase gene crtI of gene and the phytoene in pantoea agglomerans sourcePaGene without
Trace replaces the endogenous three step dehydrogenase gene crtI of phytoene of hydrogenlike silicon ion3, then to knock out hydrogenlike silicon ion endogenous
Neurosporene hydroxylation enzyme gene crtC and glucose-6-phosphate dehydrogenase gene zwf finally integrates table in the position for knocking out zwf
The 1- deoxy-D-xylulose sugar -5- phosphate synthase gene dxs endogenous up to hydrogenlike silicon ion obtains producing beta carotene hydrogenlike silicon ion work
Journey bacterium.
Above-mentioned opt crtYPaThe nucleotide sequence of gene is as shown in SEQ ID NO:1.
The above-mentioned opt crtY with the prrnB containing promoterPaGene and crtIPaThe seamless replacement crtI of gene3The method of gene
Are as follows: utilize primer opt-crtYPa- F and opt-crtYPa- R, with the opt of fidelity enzyme Pfu PCR amplification prrnB containing promoter
crtYPaGene;Using the gene of pantoea agglomerans CGMCC 1.2244 as template, primer opt-crtI is utilizedPa- F and opt-crtIPa-
R, with the four step dehydrogenase gene crtI of phytoene of fidelity enzyme Pfu PCR amplification pantoea agglomerans CGMCC 1.2244Pa;Benefit
With primer opt-crtIPaYPa- F and opt-crtIPaYPa- R passes through Overlap extension PCR ligation amplification with high fidelity enzyme KOD-Plus
The prrnB containing promoter opt crtYPaGene and crtIPaGene obtains opt crtIPaYPaGene;With hydrogenlike silicon ion
The gene of ATH2.4.1 is template, utilizes primer opt-crtIPaYPa- up-F and opt-crtIPaYPa- up-R, with fidelity enzyme
PfuPCR expands crtI3The upstream homology arm of gene, utilizes primer opt-crtIPaYPa- down-F and opt-crtIPaYPa-
Down-R expands crtI with fidelity enzyme PfuPCR3The downstream homology arm of gene;Utilize primer opt-crtIPaYPa- up-F and opt-
crtIPaYPa- R passes through the crtI of Overlap extension PCR ligation amplification with high fidelity enzyme KOD-Plus3The upstream homology arm of gene with
opt crtIPaYPaGene recycles primer opt-crtIPaYPa- up-F and opt-crtIPaYPa- down-R uses high fidelity enzyme
KOD-Plus passes through the crtI of Overlap extension PCR ligation amplification3The downstream homology arm of gene realizes crtI3The upstream of gene is homologous
Arm-optcrtIPaYPaGene-crtI3The connection of these three genetic fragments of the downstream homology arm of gene, obtains △ crtI3::opt
crtIPaYPaSegment;By △ crtI3::opt crtIPaYPaSegment is inserted into the bis- enzymes of EcoR I and XbaI of pK18mobsacB plasmid
Enzyme site obtains plasmid pK18- △ crtI3::opt crtIPaYPa, the plasmid is heat-shock transformed to enter S17-1 competence, is supplied
Body bacterial strain S17-1 Com △ crtI3::opt crtIPaYPa, parents' engagement is carried out by F-strain of hydrogenlike silicon ion, obtains bacterium
Strain RC1.
The method of the endogenous neurosporene hydroxylation enzyme gene crtC of above-mentioned knockout hydrogenlike silicon ion are as follows: with hydrogenlike silicon ion
The gene of ATH2.4.1 is template, using primer crtC-up-F and crtC-up-R, with fidelity enzyme Pfu PCR amplification crtC gene
Upstream homology arm, using primer crtC-down-F and crtC-down-R, under fidelity enzyme Pfu PCR amplification crtC gene
Swim homology arm;Using primer crtC-up-F and crtC-down-R, connected with high fidelity enzyme KOD-Plus by Overlap extension PCR
The upstream homology arm and downstream homology arm of the crtC gene of amplification, obtain △ crtC segment;△ crtC segment is inserted into
III double enzyme site of EcoR I and Hind of pK18mobsacB plasmid, obtain plasmid pK18- △ crtC, the plasmid it is heat-shock transformed into
Enter S17-1 competence, obtain F+strain S17-1Com △ crtC, carries out parents' engagement by F-strain of RC1, obtain basis
Bacterial strain RC2.
The method of the endogenous glucose-6-phosphate dehydrogenase gene zwf of above-mentioned knockout hydrogenlike silicon ion are as follows: red thin with class ball
The gene of bacterium ATH 2.4.1 is template, using primer zwf-up-F1 and zwf-up-R1, with fidelity enzyme Pfu PCR amplification zwf base
The upstream homology arm of cause is expanded under zwf gene using primer zwf-down-F1 and zwf-down-R1 with fidelity enzyme PfuPCR
Swim homology arm;Using primer zwf-up-F1 and zwf-down-R1, connected with high fidelity enzyme KOD-Plus by Overlap extension PCR
The upstream homology arm and downstream homology arm of the zwf gene of amplification, obtain △ zwf segment;△ zwf segment is inserted into
III double enzyme site of Xba I and Hind of pK18mobsacB plasmid obtains plasmid pK18- △ zwf, the heat-shock transformed entrance of the plasmid
S17-1 competence obtains F+strain S17-1 Com △ zwf, carries out parents' engagement by F-strain of RC2, obtains basic bacterium
Strain RC3.
The above-mentioned 1- deoxy-D-xylulose sugar -5- phosphate synthase base endogenous in the position integrant expression hydrogenlike silicon ion for knocking out zwf
Because of the method for dxs are as follows: using the gene of hydrogenlike silicon ion ATH 2.4.1 as template, using primer dxs-F and dxs-R, with fidelity enzyme
Pfu PCR amplification dxs gene expands the upper of zwf gene with fidelity enzyme PfuPCR using primer zwf-up-F2 and zwf-up-R2
Homology arm is swum, using primer zwf-down-F2 and zwf-down-R2, with the downstream of fidelity enzyme Pfu PCR amplification class zwf gene
Homology arm;Using primer zwf-up-F2 and dxs-R, pass through Overlap extension PCR ligation amplification with high fidelity enzyme KOD-Plus
The upstream homology arm and dxs gene of zwf gene, recycle primer zwf-up-F2 and zwf-down-R2, with high fidelity enzyme KOD-
Plus realizes the upstream homology arm-dxs of zwf gene by the downstream homology arm of the zwf gene of Overlap extension PCR ligation amplification
The connection of these three genetic fragments of the downstream homology arm of gene-zwf gene, obtains △ zwf::dxs segment;By △ zwf::dxs
Segment is inserted into III double enzyme site of Xba I and Hind of pK18mobsacB plasmid, obtains plasmid pK18- △ zwf::dxs, should
Plasmid it is heat-shock transformed enter S17-1 competence, obtains F+strain S17-1 Com △ zwf::dxs, using RC3 as F-strain into
Row parents engagement obtains producing beta carotene hydrogenlike silicon ion engineering bacteria.
Above-mentioned each primer sequence is as follows:
opt-crtYPa- F:CAACGAAAAACGCCAAGATTTCTTGGC
opt-crtYPa- R:TGTAGTTCTATTCATTCACTGCATCGCCTGCTG
opt-crtIPa- F:AGGCGATGCAGTGAATGAATAGAACT
opt-crtIPa- R:TCAAGCCAGATCCTCCAGCA
opt-crtIPaYPa- F:AGTTCGCGCCCAACGAAAAACGCCAAGATTTCTTGG
opt-crtIPaYPa- R:CAGAGGCAATCATTCAAGCCAGATCCTCCAGCAT
opt-crtIPaYPa- up-F:CCGGAATTCCTCTCGTCGGCCATCTTG
opt-crtIPaYPa- up-R:GTTTTTCGTTGGGCGCGAACTCCTGCA
opt-crtIPaYPa- down-F:GGATCTGGCTTGAATGATTGCCTCTGCCGATCT
opt-crtIPaYPa- down-R:CTAGTCTAGACGCCCGAGAAACTGTCGTAG
CrtC-up-F:CCGGAATTCTCATCATGAACGGACCGCC
CrtC-up-R:GGGATGTCAGGAAAAGGACACGCCGTCGATATACCA
CrtC-down-F:ATCGACGGCGTGTCCTTTTCCTGACATCCCGGCC
CrtC-down-R:CCCCAAGCTTGCCTTCAACACGCTCTGGAC
Zwf-up-F1:CTAGTCTAGATGATCGAGATGGCGGGAGG
Zwf-up-R1:GGCCTCTCAGCGGATAACCATGGGCTCTCCCGC
Zwf-down-F1:GGAGAGCCCATGGTTATCCGCTGAGAGGCCGCCG
Zwf-down-R1:CCCCAAGCTTGGTGATGAGGACATGGATGGC
Zwf-up-F2:CTAGTCTAGATGATCGAGATGGCGGGAGGC
Zwf-up-R2:GTCGGTCATGGGCTCTCCCGCTGCCT
Dxs-F:GAGAGCCCATGACCGACAGACCCTGCAC
Dxs-R:GGCGGCCTCTTCCGATCGCCCTCCTC
Zwf-down-F2:CGATCGGAAGAGGCCGCCGGGC
Zwf-down-R2:CCCCAAGCTTGGTGATGAGGACATGGATGGC
Beneficial effects of the present invention are as follows:
1, the lycopene cyclase gene crtY that the present invention passes through optimization pantoea agglomerans sourcePaCodon, obtain opt
crtYPaGene, then with the optcrtY of the prrnB containing promoterPaFour step of gene and the phytoene in pantoea agglomerans source
Dehydrogenase gene crtIPaThe endogenous three step dehydrogenase gene crtI of phytoene of the seamless replacement hydrogenlike silicon ion of gene3,
Beta carotene synthesis access is constructed in hydrogenlike silicon ion.
2, the present invention passes through the glucose-6-phosphate dehydrogenase gene zwf for knocking out hydrogenlike silicon ion, while integrant expression class
The 1- deoxy-D-xylulose sugar -5- phosphate synthase gene dxs of the red bacterium MEP approach of ball makes containing for hydrogenlike silicon ion production beta carotene
Amount reaches 30mg/gDCW.
3, the genetic manipulation of production beta-carotene engineering bacteria strain that the present invention constructs be hydrogenlike silicon ion chromosome it is enterprising
Capable, the maintenance of resistance or auxotrophy is not needed, and strain stability is strong.
Detailed description of the invention
Fig. 1 is building hydrogenlike silicon ion biosynthesis of beta-carotene engineered strain whole strategy figure.
Specific embodiment
The present invention is described in more detail with reference to the accompanying drawings and examples, but protection scope of the present invention is not limited only to
These embodiments.
DNA Maker used in embodiment (Maker III, Maker IV), bacterial genomes DNA extraction kit, quickly
The small extraction reagent kit of plasmid (centrifugal column type) and plain agar sugar gel DNA QIAquick Gel Extraction Kit are purchased from Tiangeng biochemical technology (Beijing)
Co., Ltd;Tap, Pfu enzyme used in PCR are purchased from the east Beijing Hui Tian Science and Technology Ltd., high fidelity enzyme KOD-Plus purchase
From Japanese TOYOBO company;Restriction enzyme enzyme and pK18mobsacB plasmid are purchased from Takara company;Primer synthesis by
Shanghai Invitrogen | Thermo Fisher Scientific is completed;It is limited that DNA sequencing by Beijing holds up the new industry biotechnology of section
Company completes.
Each primer sequence is as follows in embodiment:
opt-crtYPa- F:CAACGAAAAACGCCAAGATTTCTTGGC
opt-crtYPa- R:TGTAGTTCTATTCATTCACTGCATCGCCTGCTG
opt-crtIPa- F:AGGCGATGCAGTGAATGAATAGAACT
opt-crtIPa- R:TCAAGCCAGATCCTCCAGCA
opt-crtIPaYPa- F:AGTTCGCGCCCAACGAAAAACGCCAAGATTTCTTGG
opt-crtIPaYPa- R:CAGAGGCAATCATTCAAGCCAGATCCTCCAGCAT
opt-crtIPaYPa- up-F:CCGGAATTCCTCTCGTCGGCCATCTTG
opt-crtIPaYPa- up-R:GTTTTTCGTTGGGCGCGAACTCCTGCA
opt-crtIPaYPa- down-F:GGATCTGGCTTGAATGATTGCCTCTGCCGATCT
opt-crtIPaYPa- down-R:CTAGTCTAGACGCCCGAGAAACTGTCGTAG
CrtC-up-F:CCGGAATTCTCATCATGAACGGACCGCC
CrtC-up-R:GGGATGTCAGGAAAAGGACACGCCGTCGATATACCA
CrtC-down-F:ATCGACGGCGTGTCCTTTTCCTGACATCCCGGCC
CrtC-down-R:CCCCAAGCTTGCCTTCAACACGCTCTGGAC
Zwf-up-F1:CTAGTCTAGATGATCGAGATGGCGGGAGG
Zwf-up-R1:GGCCTCTCAGCGGATAACCATGGGCTCTCCCGC
Zwf-down-F1:GGAGAGCCCATGGTTATCCGCTGAGAGGCCGCCG
Zwf-down-R1:CCCCAAGCTTGGTGATGAGGACATGGATGGC
Zwf-up-F2:CTAGTCTAGATGATCGAGATGGCGGGAGGC
Zwf-up-R2:GTCGGTCATGGGCTCTCCCGCTGCCT
Dxs-F:GAGAGCCCATGACCGACAGACCCTGCAC
Dxs-R:GGCGGCCTCTTCCGATCGCCCTCCTC
Zwf-down-F2:CGATCGGAAGAGGCCGCCGGGC
Zwf-down-R2:CCCCAAGCTTGGTGATGAGGACATGGATGGC
crtIPaYPa- S-F:CGATCATGTGCGAGATGG
crtIPaYPa- S-R:TGTTGGTGAGCTGCATGG
Each promoter sequence is as follows in embodiment:
BBa_J95025:AAATTGTTACGGAGCCCAAAAAATCCGCTTGCGCCCGGGGCCGTC TGCTCCTAGAAA
CCGCTTCACCGAGACGAAGACCGGCAGCGCCGGACGGAGACGAGGGAGCGGATGACAGAAACGTCGGCCGCGACAAT
TGAAGATGAGGCGGACGGGATCGCTGGTTGTCTG
BBa_J95027:AGCCCAAAAAATCCGCTTGCGCCCGGGGCCGTCTGCTCCTAGAAA CCGCTTCATGTG
GAATTGTGAGCGCTCACAATTCCACA
BBa_J95026:AGCCCAAAAAATCCGCTTGCGCCCGGGGCCGTCTGCTCCTAGAAA CCGCTTCAAATT
GTGAGCGGATAACAATT
Tac:TTGACAATTAATCATCGGCTCGTATAATG
PrrnB:CAACGAAAAACGCCAAGATTTCTTGGCTGCGACATGAAATTGTTACGGAG CCCAAAAAATCC
GC
Embodiment 1
Beta carotene biosynthesis pathway in hydrogenlike silicon ion according to figure 1, building produce the class ball of beta carotene
Red bacterium engineered strain, specific construction method are as follows:
1, optimize the lycopene cyclase gene crtY in pantoea agglomerans sourcePaCodon and promoter
The lycopene cyclase gene crtY in pantoea agglomerans sourcePaThrough codon optimization, nucleotide sequence such as SEQ is obtained
Opt crtY shown in ID NO:1PaGene (by Nanjing, Jin Sirui Bioisystech Co., Ltd is synthesized).5 different startings will be contained
The free plasmid pIND of sub- BBa_J95025, BBa_J95027, BBa_J95026, tac and prrnB4-opt crtYPa(by Nanjing
The synthesis of Jin Sirui Bioisystech Co., Ltd) it is heat-shock transformed into S17-1 competence, conversion operation method are as follows: use liquid relief respectively
Rifle takes 1 μ L plasmid to mix gently with S17-1 competent cell, and ice bath stands 30min, 42 DEG C of metal bath heat shock 90s, ice bath
2min;Then 1mL is added in super-clean bench without resistant to liquids LB, 37 DEG C, 200rpm rejuvenation 45min;50 μ L rejuvenation liquid are taken uniformly to apply
It is distributed on the LB solid plate containing 50 μ g/mL Km resistances, 37 DEG C of inversion overnight incubations obtain 5 F+strain S17-1
pIND4-opt crtYPa, with RL1 bacterial strain (Su A, Chi S, Li Y, the et al.Journal of of this seminar
Agricultural and food chemistry, 2018) it is F-strain, parents' engagement is carried out, five different bacterium are obtained
Strain, this five different bacterial strains carry out fermented and cultured, the composition of fermentation medium respectively are as follows: glucose 30g/L, Dried Corn Steep Liquor Powder
3g/L, sodium glutamate 3g/L, NaCl 2.8g/L, (NH4)2SO4 3g/L、KH2PO4 3g/L、MgSO4 6.3g/L、CaCO3 2g/
L, niacin 1mg/L, niacin thiamines 1mg/L, 15 μ g/L of biotin.The fermentation training of 50% liquid amount is forwarded to by 2% inoculum concentration
It supports in base, 34 DEG C of 150rpm dark culturing 4d.The content of HPLC quantitative analysis beta carotene, as opt crtYPaGene opens
When mover is prrnB, the content highest of beta carotene.
2, with the opt crtY of the prrnB containing promoterPaGene and crtIPaThe seamless replacement hydrogenlike silicon ion itself of gene
crtI3Gene
With the opt crtY of the prrnB containing promoter of synthesisPaGene (is closed by Nanjing Jin Sirui Bioisystech Co., Ltd
At) it is template, design primer opt-crtYPa- F and opt-crtYPa- R contains promoter using fidelity enzyme Pfu PCR amplification
The opt crtY of prrnBPaGene, PCR amplification system are as follows: 2 × Pfu PCR mix, 10 μ L, opt-crtYPa-F(10μM)1μL、
opt-crtYPa- R (10 μM) 1 μ L, synthesis gene (20 μ g/ μ L) 1 μ L, ddH27 μ L of O, response procedures are as follows: 94 DEG C of denaturation 3min,
Then 94 DEG C of denaturation 30s, 62 DEG C of annealing 30s, 72 DEG C of extension 3min totally 35 circulation after, 72 DEG C of extension 10min.Use plain agar
The opt crtY of the prrnB containing promoter of sugared gel DNA QIAquick Gel Extraction Kit recycling amplificationPaGenetic fragment (1259bp);With agglomerating
The gene of general bacterium CGMCC 1.2244 is template, design primer opt-crtIPa- F and opt-crtIPa- R utilizes fidelity enzyme Pfu
PCR amplification opt crtIPaGene, PCR amplification system are as follows: 2 × Pfu PCR mix, 10 μ L, opt-crtIPa-F(10μM)1μL、
opt-crtIPa- R (10 μM) 1 μ L, synthesis gene (20 μ g/ μ L) 1 μ L, ddH27 μ L of O, response procedures are as follows: 94 DEG C of denaturation 3min,
Then 94 DEG C of denaturation 30s, 62 DEG C of annealing 30s, 72 DEG C of extension 2min totally 35 circulation after, 72 DEG C of extension 10min.Recycling amplification
opt crtIPaGenetic fragment (1480bp);Design primer opt-crtIPaYPa- F and opt-crtIPaYPa- R uses high fidelity enzyme
KOD-Plus passes through the opt crtY of Overlap extension PCR ligation amplificationPaGene and crtIPaGene, Overlap extension PCR amplification are anti-
Answer system are as follows: 10 × PCR buffer for KOD-Plus, 5 μ L, 5 μ L of dNTPs (2mM), MgSO4(25mM)2μL、opt-
crtIPaYPa-F(10μM)1.5μL、opt-crtIPaYPa-R(10μM)1.5μL、opt crtYPaGenetic fragment (20 μ g/ μ L) 2 μ
L、opt crtIPaGenetic fragment (20 μ g/ μ L) 2 μ L, KOD-Plus (1U/ μ L) 1 μ L, ddH230 μ L of O, response procedures are as follows: 94 DEG C
Be denaturalized 2min, then 94 DEG C of denaturation 15s, 65 DEG C of annealing 30s, 68 DEG C of extension 3min totally 35 recycle after, 68 DEG C of extension 10min.
Recycle opt crtIPaYPaGenetic fragment (2746 bp).
Using the gene of hydrogenlike silicon ion ATH 2.4.1 as template, design primer opt-crtIPaYPa- up-F and opt-
crtIPaYPa- up-R utilizes fidelity enzyme Pfu PCR amplification crtI3The upstream homology arm of gene, PCR amplification system are as follows: 2 × Pfu
PCR mix 10μL、opt-crtIPaYPa-up-F(10μM)1μL、opt-crtIPaYPa- up-R (10 μM) 1 μ L, hydrogenlike silicon ion
Gene (20 μ g/ μ L) 1 μ L, ddH27 μ L of O, response procedures are as follows: 94 DEG C of denaturation 3min, then 94 DEG C of denaturation 30s, 62 DEG C annealing
30s, 72 DEG C of extension 1min totally 35 circulation after, 72 DEG C of extension 10min.Recycle crtI3Upstream homology arm genetic fragment (453
bp)。
Using the gene of hydrogenlike silicon ion ATH 2.4.1 as template, design primer opt-crtIPaYPa- down-F and opt-
crtIPaYPa- down-R utilizes fidelity enzyme Pfu PCR amplification crtI3Downstream homology arm, PCR amplification system are as follows: 2 × Pfu
PCR mix 10μL、opt-crtIPaYPa-down-F(10μM)1μL、opt-crtIPaYPa- down-R (10 μM) 1 μ L, class ball are red
Bacterial gene (20 μ g/ μ L) 1 μ L, ddH27 μ L of O, response procedures are as follows: 94 DEG C of denaturation 3min, then 94 DEG C of denaturation 30s, 64 DEG C move back
Fiery 30s, 72 DEG C of extension 1min totally 35 circulation after, 72 DEG C of extension 10min.It is returned with plain agar sugar gel DNA QIAquick Gel Extraction Kit
Receive crtI3Downstream homology arm genetic fragment (411bp).
Utilize primer opt-crtIPaYPa- up-F and opt-crtIPaYPa- R is prolonged with high fidelity enzyme KOD-Plus by overlapping
Stretch the crtI of PCR ligation amplification3The upstream homology arm and opt crtI of genePaYPaGene, Overlap extension PCR amplification reaction system
Are as follows: 10 × PCR buffer for KOD-Plus, 5 μ L, 5 μ L of dNTPs (2mM), MgSO4(25mM)2μL、opt-crtIPaYPa-
up-F(10μM)1.5μL、opt-crtIPaYPa-R(10μM)1.5μL、opt crtIPaYPaGenetic fragment (20 μ g/ μ L) 2 μ L,
crtI3Upstream homology arm genetic fragment (20 μ g/ μ L) 2 μ L, KOD-Plus (1U/ μ L) 1 μ L, ddH230 μ L of O, response procedures
Are as follows: 94 DEG C of denaturation 2min, then 94 DEG C of denaturation 15s, 64 DEG C of annealing 30s, 68 DEG C of extension 2min totally 35 circulation after, 68 DEG C extension
10min.Recycle crtI3Upstream homology arm-the optcrtI of genePaYPaGene junction fragment.Recycle primer opt-
crtIPaYPa- up-F and crtIPaYPa- down-R, with high fidelity enzyme KOD-Plus ligation amplification crtI3The downstream of gene is homologous
Arm, Overlap extension PCR amplification reaction system are as follows: 10 × PCR buffer for KOD-Plus, 5 μ L, 5 μ L of dNTPs (2mM),
MgSO4(25mM)2μL、opt-crtIPaYPa-up-F(10μM)1.5μL、crtIPaYPa-down-R(10μM)1.5μL、crtI3Base
Upstream homology arm-the optcrtI of causePaYPaGene junction fragment (20 μ g/ μ L) 2 μ L, crtI3Downstream homology arm genetic fragment
(20μg/μL)2μL、KOD-Plus(1U/μL)1μL、ddH230 μ L of O, response procedures are as follows: 94 DEG C of denaturation 2min, then 94 DEG C of changes
Property 15s, 64 DEG C of annealing 30s, 68 DEG C of extension 150s totally 30 circulation after, 68 DEG C of extension 10min.After Overlap extension PCR, add
10 μ L Taq Mix enzymes continue 72 DEG C of PCR and extend 30min, recycle crtI after mixing3Upstream homology arm-the opt of gene
crtIPaYPaGene-crtI3The junction fragment of three genes of downstream homology arm of gene, obtains △ crtI3::opt crtIPaYPa
Segment.
By △ crtI3::opt crtIPaYPaSegment with after EcoR I and XbaI double digestion through T4Ligase is connected to
The EcoR I and XbaI double enzyme site of pK18mobsacB plasmid, double enzyme digestion reaction system are as follows: 10 × M buffer, 5 μ L, EcoR
Ⅰ2.5μL、XbaI 2.5μL、△crtI3::crtIPaYPa40 μ L of/pK18mobsacB, reaction condition are as follows: 37 DEG C of digestion 2h are obtained
Obtain plasmid pK18- △ crtI3::opt crtIPaYPa, the plasmid is heat-shock transformed into S17-1 competence, obtain F+strain
S17-1 Com△crtI3::opt crtIPaYPa, parents' engagement is carried out by F-strain of hydrogenlike silicon ion, obtains bacterial strain RC1,
Save strain.
3, crtC gene disruption beta carotene metabolic exhaustion approach is knocked out
According to the method for constructing bacterial strain RC in step 1, using the gene of hydrogenlike silicon ion ATH 2.4.1 as template, using drawing
Object crtC-up-F and crtC-up-R, with the neurosporene hydroxylation enzyme gene of fidelity enzyme Pfu PCR amplification hydrogenlike silicon ion
The upstream homology arm (427bp) of crtC, using primer crtC-down-F and crtC-down-R, with fidelity enzyme Pfu PCR amplification
The downstream homology arm (428bp) of crtC gene, pcr amplification reaction program are as follows: 94 DEG C of denaturation 3min, then 94 DEG C of denaturation 30s, 60
DEG C annealing 30s, 72 DEG C of extensions 1min totally 35 recycle after, 72 DEG C of extension 10min.Utilize primer crtC-up-F and crtC-
Down-R, upstream homology arm and downstream with high fidelity enzyme KOD-Plus by the crtC gene of Overlap extension PCR ligation amplification
Homology arm, Overlap extension PCR amplified reaction program are as follows: 94 DEG C of denaturation 2min, then 94 DEG C of denaturation 15s, 60 DEG C of annealing 30s, 68
DEG C extend 60s totally 35 circulation after, 68 DEG C of extension 10min obtain △ crtC segment;△ crtC segment is inserted into
III double enzyme site of EcoR I and Hind of pK18mobsacB plasmid, obtain plasmid pK18- △ crtC, the plasmid it is heat-shock transformed into
Enter S17-1 competence, obtain F+strain S17-1 Com △ crtC, carries out parents' engagement by F-strain of RC1, obtain base
Plinth bacterial strain RC2.
4, it knocks out central metabolic pathway key gene zwf and blocks competition of the pentose phosphate pathway to carbon source
Primer is utilized using the gene of hydrogenlike silicon ion ATH2.4.1 as template according to the method for constructing bacterial strain RC in step 1
Zwf-up-F1 and zwf-up-R1, with the glucose-6-phosphate dehydrogenase gene zwf of fidelity enzyme Pfu PCR amplification hydrogenlike silicon ion
Upstream homology arm (582bp), using primer zwf-down-F1 and zwf-down-R1, with fidelity enzyme Pfu PCR amplification zwf base
The downstream homology arm (639bp) of cause, pcr amplification reaction program are as follows: 94 DEG C of denaturation 3min, then 94 DEG C of denaturation 30s, 66 DEG C annealing
30s, 72 DEG C of extension 1min totally 35 circulation after, 72 DEG C of extension 10min.Using primer zwf-up-F1 and zwf-down-R1, use
Upstream homology arm and downstream homology arm of the high fidelity enzyme KOD-Plus by the zwf gene of Overlap extension PCR ligation amplification, overlapping
Extension PCR amplified reaction program are as follows: 94 DEG C of denaturation 2min, then 94 DEG C of denaturation 15s, 67 DEG C of annealing 30s, 68 DEG C of extension 40s are total
After 35 circulations, 68 DEG C of extension 10min obtain △ zwf segment;△ zwf segment is inserted into the Xba I of pK18mobsacB plasmid
With III double enzyme site of Hind, plasmid pK18- △ zwf is obtained, the plasmid is heat-shock transformed to enter S17-1 competence, obtains donor
Bacterial strain S17-1 Com △ zwf carries out parents' engagement by F-strain of RC2, obtains basic bacterial strain RC3.
5, integrant expression MEP approach rate limiting gene dxs improves the supply of beta carotene direct precursor substance
According to the method for constructing bacterial strain RC in step 1, using the gene of hydrogenlike silicon ion ATH 2.4.1 as template, using drawing
Object dxs-F and dxs-R, with the endogenous 1- deoxy-D-xylulose sugar -5- phosphate synthase gene of fidelity enzyme Pfu PCR amplification hydrogenlike silicon ion
Dxs (1953 bp), pcr amplification reaction program are as follows: 94 DEG C of denaturation 3min, then 94 DEG C of denaturation 30s, 68 DEG C of annealing 30s, 72 DEG C
Extend 4min totally 30 circulation after, 72 DEG C of extension 10min.Using primer zwf-up-F2 and zwf-up-R2, with fidelity enzyme Pfu
The upstream homology arm (560bp) of PCR amplification zwf gene, using primer zwf-down-F2 and zwf-down-R2, with fidelity enzyme
PfuPCR expands the downstream homology arm (614bp) of zwf gene, pcr amplification reaction program are as follows: 94 DEG C of denaturation 3min, then 94 DEG C
Be denaturalized 30s, 68 DEG C of annealing 30s, 72 DEG C of extension 1min totally 35 recycle after, 72 DEG C of extension 10min.Utilize primer zwf-up-F2
With dxs-R, the upstream homology arm and dxs base for passing through the zwf gene of Overlap extension PCR ligation amplification with high fidelity enzyme KOD-Plus
Cause recycles primer zwf-up-F2 and zwf-down-R2, passes through Overlap extension PCR ligation amplification with high fidelity enzyme KOD-Plus
Zwf gene downstream homology arm, realize zwf gene upstream homology arm-dxs gene-zwf gene downstream homology arm this three
The connection of a genetic fragment, Overlap extension PCR amplified reaction program are as follows: 94 DEG C of denaturation 2min, then 94 DEG C of denaturation 15s, 68 DEG C
After totally 35 circulations, 68 DEG C of extension 10min obtain △ zwf::dxs segment by annealing 30s, 68 DEG C of extension 100s;By △ zwf::
Dxs segment is inserted into III double enzyme site of Xba I and Hind of pK18mobsacB plasmid, obtains plasmid pK18- △ zwf::dxs,
The plasmid is heat-shock transformed to enter S17-1 competence, F+strain S17-1 Com △ zwf::dxs is obtained, using RC3 as F-strain
Parents' engagement is carried out, beta carotene hydrogenlike silicon ion engineering bacteria is obtained.
Inventor carries out fermented and cultured, the composition of fermentation medium using the hydrogenlike silicon ion engineering bacteria that embodiment 1 obtains
Are as follows: glucose 30g/L, Dried Corn Steep Liquor Powder 3g/L, sodium glutamate 3g/L, NaCl 2.8g/L, (NH4)2SO4 3g/L、KH2PO4
3g/L、MgSO4 6.3g/L、CaCO32g/L, niacin 1mg/L, niacin thiamines 1mg/L, 15 μ g/L of biotin.By 6% inoculation
Amount is forwarded in the fermentation medium of 60% liquid amount, 34 DEG C of 150rpm dark culturings.In beta carotene hydrogenlike silicon ion engineering
Bacterium early stage fermentation stage (0-48h), fermentation liquid be it is light yellow, then become yellow (48-96h) at leisure until crocus (96-
168h).When hydrogenlike silicon ion engineering bacterium fermentation 168h, biomass reaches 6.5g/L, and through HPLC quantitative analysis, beta carotene contains
Amount is 30mg/gDCW.
Sequence table
<110>Xi'an Hai Sifu Biotechnology Co., Ltd
<120>a kind of production beta carotene hydrogenlike silicon ion engineered strain and its construction method
<141> 2018-07-26
<160> 1
<170> SIPOSequenceListing 1.0
<210> 1
<211> 1161
<212> DNA
<213> Erwinia herbicola
<400> 1
atgccccgct atgacctcat cctggtgggc gcgggcctcg ccaacggcct gatcgccctc 60
cgcctgcgcc agcagcgccc ctcgctgcgc atcctgctga tcgacgccga gcgcgagccc 120
ggcgccaacc acacctggtc gttccatgcg gaggacctca cggagaccca gcaccgctgg 180
atcgccccgc tcgtggtgca ccattggccg ggctatgagg tgcgcttccc ccagcgctcg 240
cgctcgctca actcgggcta tttctgcgtg acctcggagc gcttcgtgca ggtgatccgc 300
gaccgcttcg cccccgacct gctcctgaac acccgcgtgg ccggcatcgc ctcgcgcacg 360
gtgaccctgg acgacggccg cgtgctggag tcggacgcgg tgatcgacgg ccgcggctac 420
cagccggacg ccgcgctgtg catgggcttc cagtcgttcg tgggccagga gtggcagctg 480
tcggagcccc atggcctgac ggcccccatc atcatggacg ccaccgtgga ccagcaggcc 540
ggctaccgct tcgtgtattc gctcccgttc tcggccgaca ccctcctgat cgaggacacg 600
cattacatcg acaacgccac cctggagggc gaccgcgccc gccagaacat ccgcgcctat 660
gcggcccagc agggctggcg cctcgaccgc ctcctgcgcg aggagcaggg cgccctcccc 720
atcacgctca ccggcgacgt ggcggccttc tggcagaagc atgacctgcc ctgctcgggc 780
ctccgcgccg gcctgttcca tccgacgacc ggctattcgc tgcccctggc ggtggccctg 840
gcggaccgcc tggcccagat gcagaccttc acgtcggaga ccctgcacgc gacgatccag 900
cagttcgcct cgcaggcctg gcagcagcag cgcttcttcc gcatgctcaa ccgcatgctc 960
ttcctggccg gcccggcgga ccagcgctgg caggtgatgc agcgcttcta tggcctcccc 1020
gagggcctga tcgcccgctt ctatgcgggc aagctgaccc tgccggaccg cctccgcatc 1080
ctgtcgggca agccgcccgt gccggtgctg gcggccctgc aggccatcat gacgccgcat 1140
cgccagcagg cgatgcagtg a 1161
Claims (7)
1. a kind of construction method for producing beta carotene hydrogenlike silicon ion engineering bacteria, it is characterised in that: optimization pantoea agglomerans first
The lycopene cyclase gene crtY in sourcePaCodon, obtain opt crtYPaGene, then with the prrnB's containing promoter
opt crtYPaFour step dehydrogenase gene crtI of gene and the phytoene in pantoea agglomerans sourcePaThe seamless replacement class ball of gene
The endogenous three step dehydrogenase gene crtI of phytoene of red bacterium3, then knock out the endogenous neurosporene hydroxyl of hydrogenlike silicon ion
Base enzyme gene crtC and glucose-6-phosphate dehydrogenase gene zwf is finally red thin in the position integrant expression class ball for knocking out zwf
The endogenous 1- deoxy-D-xylulose sugar -5- phosphate synthase gene dxs of bacterium obtains producing beta carotene hydrogenlike silicon ion engineering bacteria.
2. the construction method according to claim 1 for producing beta carotene hydrogenlike silicon ion engineering bacteria, it is characterised in that: institute
State opt crtYPaThe nucleotide sequence of gene is as shown in SEQ ID NO:1.
3. the construction method according to claim 2 for producing beta carotene hydrogenlike silicon ion engineering bacteria, it is characterised in that with containing
The opt crtY of promoter prrnBPaGene and crtIPaThe seamless replacement crtI of gene3The method of gene are as follows: utilize primer opt-
crtYPa- F and opt-crtYPa- R, with the opt crtY of fidelity enzyme Pfu PCR amplification prrnB containing promoterPaGene;With agglomerating
The gene of general bacterium CGMCC 1.2244 is template, utilizes primer opt-crtIPa- F and opt-crtIPa- R, with fidelity enzyme Pfu
The four step dehydrogenase gene crtI of phytoene of PCR amplification pantoea agglomerans CGMCC 1.2244Pa;Utilize primer opt-
crtIPaYPa- F and opt-crtIPaYPa- R contains promoter by Overlap extension PCR ligation amplification with high fidelity enzyme KOD-Plus
The opt crtY of prrnBPaGene and crtIPaGene obtains opt crtIPaYPaGene;With hydrogenlike silicon ion ATH 2.4.1's
Gene is template, utilizes primer opt-crtIPaYPa- up-F and opt-crtIPaYPa- up-R, with fidelity enzyme Pfu PCR amplification
crtI3The upstream homology arm of gene, utilizes primer opt-crtIPaYPa- down-F and opt-crtIPaYPa- down-R uses fidelity
Enzyme Pfu PCR amplification crtI3The downstream homology arm of gene;Utilize primer opt-crtIPaYPa- up-F and opt-crtIPaYPa- R,
Pass through the crtI of Overlap extension PCR ligation amplification with high fidelity enzyme KOD-Plus3The upstream homology arm and opt crtI of genePaYPa
Gene recycles primer opt-crtIPaYPa- up-F and opt-crtIPaYPa- down-R passes through weight with high fidelity enzyme KOD-Plus
The crtI of folded extension PCR ligation amplification3The downstream homology arm of gene realizes crtI3Upstream homology arm-the optcrtI of genePaYPa
Gene-crtI3The connection of these three genetic fragments of the downstream homology arm of gene, obtains △ crtI3::opt crtIPaYPaSegment;
By △ crtI3::opt crtIPaYPaSegment is inserted into the EcoR I and XbaI double enzyme site of pK18mobsacB plasmid, obtains matter
Grain pK18- △ crtI3::opt crtIPaYPa, the plasmid is heat-shock transformed to enter S17-1 competence, obtains F+strain S17-
1Com△crtI3::opt crtIPaYPa, parents' engagement is carried out by F-strain of hydrogenlike silicon ion, obtains bacterial strain RC1;
Above-mentioned each primer sequence is as follows:
opt-crtYPa- F:CAACGAAAAACGCCAAGATTTCTTGGC
opt-crtYPa- R:TGTAGTTCTATTCATTCACTGCATCGCCTGCTG
opt-crtIPa- F:AGGCGATGCAGTGAATGAATAGAACT
opt-crtIPa- R:TCAAGCCAGATCCTCCAGCA
opt-crtIPaYPa- F:AGTTCGCGCCCAACGAAAAACGCCAAGATTTCTTGG
opt-crtIPaYPa- R:CAGAGGCAATCATTCAAGCCAGATCCTCCAGCAT
opt-crtIPaYPa- up-F:CCGGAATTCCTCTCGTCGGCCATCTTG
opt-crtIPaYPa- up-R:GTTTTTCGTTGGGCGCGAACTCCTGCA
opt-crtIPaYPa- down-F:GGATCTGGCTTGAATGATTGCCTCTGCCGATCT
opt-crtIPaYPa- down-R:CTAGTCTAGACGCCCGAGAAACTGTCGTAG.
4. the construction method according to claim 3 for producing beta carotene hydrogenlike silicon ion engineering bacteria, it is characterised in that knock out
The method of the endogenous neurosporene hydroxylation enzyme gene crtC of hydrogenlike silicon ion are as follows: with the gene of hydrogenlike silicon ion ATH 2.4.1
For template, using primer crtC-up-F and crtC-up-R, with the upstream homology arm of fidelity enzyme Pfu PCR amplification crtC gene,
Using primer crtC-down-F and crtC-down-R, with the downstream homology arm of fidelity enzyme Pfu PCR amplification crtC gene;It utilizes
Primer crtC-up-F and crtC-down-R pass through the crtC base of Overlap extension PCR ligation amplification with high fidelity enzyme KOD-Plus
The upstream homology arm and downstream homology arm of cause, obtain △ crtC segment;△ crtC segment is inserted into pK18mobsacB plasmid
III double enzyme site of EcoR I and Hind obtains plasmid pK18- △ crtC, and the plasmid is heat-shock transformed to enter S17-1 competence, obtains
To F+strain S17-1Com △ crtC, parents' engagement is carried out by F-strain of RC1, obtains basic bacterial strain RC2;
Above-mentioned each primer sequence is as follows:
CrtC-up-F:CCGGAATTCTCATCATGAACGGACCGCC
CrtC-up-R:GGGATGTCAGGAAAAGGACACGCCGTCGATATACCA
CrtC-down-F:ATCGACGGCGTGTCCTTTTCCTGACATCCCGGCC
CrtC-down-R:CCCCAAGCTTGCCTTCAACACGCTCTGGAC.
5. the construction method according to claim 4 for producing beta carotene hydrogenlike silicon ion engineering bacteria, it is characterised in that knock out
The method of the endogenous glucose-6-phosphate dehydrogenase gene zwf of hydrogenlike silicon ion are as follows: with the gene of hydrogenlike silicon ion ATH 2.4.1
It is sharp with the upstream homology arm of fidelity enzyme Pfu PCR amplification zwf gene using primer zwf-up-F1 and zwf-up-R1 for template
With primer zwf-down-F1 and zwf-down-R1, with the downstream homology arm of fidelity enzyme Pfu PCR amplification zwf gene;Using drawing
Object zwf-up-F1 and zwf-down-R1 pass through the zwf gene of Overlap extension PCR ligation amplification with high fidelity enzyme KOD-Plus
Upstream homology arm and downstream homology arm, obtain △ zwf segment;△ zwf segment is inserted into I He of Xba of pK18mobsacB plasmid
III double enzyme site of Hind obtains plasmid pK18- △ zwf, and the plasmid is heat-shock transformed to enter S17-1 competence, obtains donor bacterium
Strain S17-1Com △ zwf carries out parents' engagement by F-strain of RC2, obtains basic bacterial strain RC3;
Above-mentioned each primer sequence is as follows:
Zwf-up-F1:CTAGTCTAGATGATCGAGATGGCGGGAGG
Zwf-up-R1:GGCCTCTCAGCGGATAACCATGGGCTCTCCCGC
Zwf-down-F1:GGAGAGCCCATGGTTATCCGCTGAGAGGCCGCCG
Zwf-down-R1:CCCCAAGCTTGGTGATGAGGACATGGATGGC.
6. the construction method according to claim 5 for producing beta carotene hydrogenlike silicon ion engineering bacteria, it is characterised in that striking
Except the method for the endogenous 1- deoxy-D-xylulose sugar -5- phosphate synthase gene dxs of the position integrant expression hydrogenlike silicon ion of zwf are as follows: with
The gene of hydrogenlike silicon ion ATH 2.4.1 is template, using primer dxs-F and dxs-R, with fidelity enzyme Pfu PCR amplification dxs base
Cause, using primer zwf-up-F2 and zwf-up-R2, with the upstream homology arm of fidelity enzyme Pfu PCR amplification zwf gene, using drawing
Object zwf-down-F2 and zwf-down-R2, with the downstream homology arm of fidelity enzyme Pfu PCR amplification class zwf gene;Utilize primer
Zwf-up-F2 and dxs-R, it is homologous by the upstream of the zwf gene of Overlap extension PCR ligation amplification with high fidelity enzyme KOD-Plus
Arm and dxs gene recycle primer zwf-up-F2 and zwf-down-R2, pass through overlap-extension PCR with high fidelity enzyme KOD-Plus
The downstream homology arm of the zwf gene of PCR ligation amplification, realize zwf gene upstream homology arm-dxs gene-zwf gene under
The connection for swimming these three genetic fragments of homology arm, obtains △ zwf::dxs segment;△ zwf::dxs segment is inserted into
III double enzyme site of Xba I and Hind of pK18mobsacB plasmid, obtains plasmid pK18- △ zwf::dxs, which turns
Change and enter S17-1 competence, obtain F+strain S17-1Com △ zwf::dxs, carries out parents' engagement by F-strain of RC3,
It obtains producing beta carotene hydrogenlike silicon ion engineering bacteria;
Above-mentioned each primer sequence is as follows:
Zwf-up-F2:CTAGTCTAGATGATCGAGATGGCGGGAGGC
Zwf-up-R2:GTCGGTCATGGGCTCTCCCGCTGCCT
Dxs-F:GAGAGCCCATGACCGACAGACCCTGCAC
Dxs-R:GGCGGCCTCTTCCGATCGCCCTCCTC
Zwf-down-F2:CGATCGGAAGAGGCCGCCGGGC
Zwf-down-R2:CCCCAAGCTTGGTGATGAGGACATGGATGGC.
7. the production beta carotene hydrogenlike silicon ion engineered strain that the construction method of claim 1 obtains.
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