CN108715850B - GING2 gene knockout in epidermal stem cells by using CRISPR-Cas system - Google Patents

GING2 gene knockout in epidermal stem cells by using CRISPR-Cas system Download PDF

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CN108715850B
CN108715850B CN201810570225.9A CN201810570225A CN108715850B CN 108715850 B CN108715850 B CN 108715850B CN 201810570225 A CN201810570225 A CN 201810570225A CN 108715850 B CN108715850 B CN 108715850B
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epidermal stem
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CN108715850A (en
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杨骏
朱成光
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Aiyi Life Technology (Guangdong) Co., Ltd
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    • C12N15/113Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides; Antisense DNA or RNA; Triplex- forming oligonucleotides; Catalytic nucleic acids, e.g. ribozymes; Nucleic acids used in co-suppression or gene silencing
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    • C12N15/09Recombinant DNA-technology
    • C12N15/87Introduction of foreign genetic material using processes not otherwise provided for, e.g. co-transformation
    • C12N15/90Stable introduction of foreign DNA into chromosome
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    • C12N2510/00Genetically modified cells

Abstract

The invention provides GINS2 gene editing aiming at epidermal stem cells by adopting a CRISPR-cas system, and particularly relates to establishment of an epidermal stem cell line for constructing GINS2 gene knockout. Two specific gRNAs are constructed and obtained, and the gene editing efficiency of the CRISPR/Cas9 in the epidermal stem cell to GINS2 can be obviously improved. The epidermal stem cell GINS2 knockout plasmid provided by the invention has better genetic stability and higher targeting efficiency.

Description

GING2 gene knockout in epidermal stem cells by using CRISPR-Cas system
Technical Field
The invention provides a method for editing a GING2 gene aiming at an epidermal stem cell by using a CRISPR-cas system, and particularly relates to establishment of an epidermal stem cell line with a GING2 gene knockout structure.
Background
Epidermal stem cells (epistem cells, EpiSCS) are stem cells with the potential for self-proliferation and multidirectional differentiation, the normal proliferation and differentiation of which are essential requirements for maintaining the structural and functional integrity of the skin and its appendages (sweat gland hair, sebaceous glands). Under physiological conditions, the epidermal stem cell is differentiated into a stem cell and a transient amplifying cell (TA cell) by an asymmetric division mode, and the TA cell is differentiated into a Post-mitotic cell (Post-mitotic cell) and a terminal differentiated cell (terminal-differentiated cell) after multiple divisions so as to meet the requirement of continuous renewal of the epidermal cell. Studies have shown that epidermal stem cells not only can be subcultured for long periods in vitro and retain their proliferative differentiation potential (Dunnwald et al, Exp dermaltol, 2001, 10: 45-54.Papini et al stem cells, 2003, 21: 481-: 20: 21-31]. Therefore, the purified epidermal stem cells can be obtained, which not only can provide seed cells for constructing artificial skin with physiological functions, but also can be used for gene therapy and the production of transgenic animals.
Human pluripotent stem cells (hPSCs) and genome editing technology are combined to establish a cell model, and a unique experimental platform is provided for disease research. By utilizing the platform system, researchers can research the influence of specific gene mutation and even chromosome structure variation on various cell types and tissue and organ functions of human beings and detailed molecular mechanisms thereof, and can establish 'personalized' disease models carrying different genetic mutations for large-scale drug screening. The establishment of the model system benefits from the rapid development of a genome editing technology, in particular a CRISPR/Cas9(clustered modular shortpalindromic repeats/CRISPR-associated polypeptides 9, CRISPR/Cas9) technology.
GINS2 is a member of the GINS family of the DNA replication complex, located on human chromosome 16q24, whose mRNA is 1196bp in length and encodes a protein with a relative molecular mass of 21000. GINS is a replication helicase that opens a DNA double strand before moving to the replication fork. It has been shown that members of the GINS family play a role in the development of cancer, e.g., the GINS family is overexpressed in invasive melanoma, and that DNA replication-related proteins play different roles in different cells, e.g., GINS functions in determining the number of centrosome replications and the different stages of disease development, and is particularly closely related to chromosome segregation.
However, there are few reports of GINS2 in tumor-related fields. In CN106620703A, aiming at a small interfering RNA sequence, an RNA interfering vector and an RNA interfering lentivirus of a human GINS2 gene, the silencing efficiency of the GINS2 gene and the influence of the GINS2-siRNA lentivirus on the proliferation capacity and the apoptosis level of tumor cells are further detected, and the result shows that after the expression of the human GINS2 gene is down-regulated by an RNAi method, the proliferation and the growth of the tumor cells can be effectively inhibited and the apoptosis of the tumor cells can be promoted, which indicates that the GINS2 gene is a protooncogene and can be used as a target spot for tumor treatment, and the silencing of the expression of the GINS2 gene by the RNAi method can be used as an effective means for inhibiting the tumor development. However, in this study, SiRNA was used for interference, and the method has the disadvantage that the knockout was not complete and the inheritance could not be stably knocked out. In (Integration of Genomic, biological, and chemical applications to Target p53Loss and Gain-of-Function in Triple reactive Breast cancer), although it is mentioned that CRISPR/Cas can be used in MCM2, GINS2, C19orf43, ELOVL2, ARL4D, DNM3OS, FGFR2, IFIT2, MPPED2, B2M, ERRFI1, GLUL CASP4, CPED1, SPTLC2, CMTM6, CFH, CARS2, SUMF1, it is only one idea and not implemented. CRISPR modification of different genes is not simple and easy to design, and requires overcoming numerous obstacles, with great experimental difficulties.
Based on the pluripotency of epidermal stem cells, in order to study the function of the GINS2 gene-knocked-out epidermal stem cells in cancer treatment, it becomes important to establish GINS2 gene-knocked-out epidermal stem cell lines.
Disclosure of Invention
The invention aims to provide an epidermal stem cell with a GINS2 gene knocked out, which effectively overcomes the technical defect that the prior art uses siRNA for interference and can not stably inherit.
In order to achieve the above object, the present invention provides a target of CRISPR-cas system, and specific sgrnas designed according to the gene sequence of GINS2 are as follows:
GINS2-sgRNA7:5’to 3’aatgcccagcccttactaca
GINS2-sgRNA23:5’to 3’tgcatggaagccatcacact。
to achieve the above objects, the present invention provides a method for increasing CRISPR-cas system to knock out GINS2 gene in epidermal stem cells, comprising introducing into a host cell a potentiating protein, which is a protein encoded by the nucleotide sequence shown in seq id No. 1, ESCS-higher.
Further, the potentiating protein comprises a) or b):
a) 1, and a polynucleotide sequence of a protein coded by the nucleotide sequence shown in SEQ ID NO;
b) the amino acid sequence shown in SEQ ID NO. 2.
Still further, there is provided a system for gene editing using CRISPR/Cas9 in epidermal stem cells, characterized in that the system comprises: (1) for expressing SEQ ID NO:1 the plasmid of ESCS-higher; (2) a PX 330-expressing plasmid (which can express sgRNA and cas9) into which sgRNA has been inserted.
Further, the sgRNA and cas9 expression vectors may also be other expression vectors commonly used in the art.
The invention provides a method for editing GINS2 by using CRISPR/Cas9 gene in epidermal stem cells, which has the following advantages:
the invention provides 2 specific gRNAs which can specifically knock out the GINS2 gene in an epidermal stem cell by designing and optimizing the gRNAs for nearly one hundred times, and the method has a strong knock-out effect.
Drawings
FIG. 1 is a graph showing the result of detecting the expression of GINS2 protein by Western-blot; 4 is epidermal stem cell blank control; 3 represents the effect of gRNA7 into which no potentiating protein was introduced; 2 is the effect of gRNA7 introduced with a potentiated protein; reference numeral 1 denotes the effect of introducing gRNA23 as a potentiated protein.
The technical solution of the present invention is further described in detail by the accompanying drawings and embodiments.
Detailed Description
The technical scheme of the method for improving the genome editing efficiency of the invention is further illustrated by the specific examples.
Example 1 construction of CRISPR expression vectors
Design of gRNA
According to the gene sequence of a target gene, the specific form of sgRNA obtained by the applicant through early optimization design and specific screening from dozens of grnas is as follows:
GINS2-sgRNA7:5’to 3’aatgcccagcccttactaca
GINS2-sgRNA23:5’to 3’tgcatggaagccatcacact。
according to the above gRNA, a forward oligonucleotide sequence was obtained by adding CACC to the 5 'end of the gRNA, a reverse oligonucleotide sequence was obtained by adding AAAC to the 5' end of the complementary strand, and the forward and reverse oligonucleotide sequences were synthesized, respectively, and then the synthesized sequences were denatured and annealed to obtain a double-stranded DNA fragment having a BbsI cohesive end, as follows: forward direction: 5' -CACCNNNNNNNNNNNNNNNNNNNN reverse: NNNNNNNNNNNNNNNNNNNNCAAA-5', the denaturation and annealing system is as follows: mu.l forward oligonucleotide strand (50. mu.M) 2. mu.l reverse oligonucleotide strand (50. mu.M) 46. mu. l l. mu.NEB buffer was run in a PCR instrument following the following procedure: 4min at 90 ℃; 72 ℃ for 10 min; 22min at 37 ℃; 25 ℃ for 25 min.
The annealed double-stranded oligonucleotide chain contains a cohesive end of BbsI, and is directly connected with a pX330-U6-Chimeric _ BB-CBh-hSpCas9 (hereinafter referred to as PX330) vector cut by BbsI, so that a PX330-gRNA-Cas9 recombinant plasmid can be obtained.
Enzyme digestion system: 39.3. mu.l of water, 5. mu.l of 10. mu.l of FD buffer, 2. mu.l of BbsI, and 2. mu.l (2. mu.g) of PX 3303.7. mu.l (2. mu.g) digested plasmid in 37 ℃ water bath for 2h were recovered directly by using a gel recovery kit.
A connection system: annealing product 0.5 μ l, linearized PX330 plasmid 2 μ 1, 5 × ligationbuffer2 μ l, T4DNAligase (3 units/. mu.1), 1 μ l, water 4.5 μ l, water bath 2h at 16 deg.C to transform the ligation product obtained in the above steps into JM109 competent cells, coating on LB plate of Amp +, picking positive clone inoculation, shaking table at 37 deg.C overnight, plasmid extraction kit extracting plasmid and sequencing identification to obtain PX330-gRNA plasmid.
Example 2 cloning of the synergistic protein ESCS-higher and construction of the vector
Cloning the synergistic protein ESCS-higher gene, and obtaining the amino acid sequence shown in SEQ ID NO:1, the gene sequence is used as a template, the sequences of upstream and downstream primers are 5'-atgatatactttattagaat-3' and 5'-tcaagggatttccatttctc-3' respectively, and the primers and the whole genome are synthesized by Shanghai Biotech Co., Ltd. And (2) amplifying the ESCS-higher gene target gene fragment by PCR reaction, wherein the amplification reaction system comprises 95 ℃, 40s, 57 ℃, 1min, 72 ℃, 10min and 35 cycles, PCR products are sequenced by Shanghai's Productivity Co., Ltd, and the PCR products are combined with the sequences shown in SEQ ID NO:1 are perfectly matched. And then, connecting the target gene amplified by the PCR to an empty vector lentiviral vector pHIV-CS-CDF-CG-PRE, and identifying the recombinant lentiviral vector by methods of PCR amplification, enzyme digestion, sequencing and the like. The combination proves that the recombinant lentiviral vector is successfully constructed. The recombinant lentiviral vector plasmids were then co-infected with helper plasmids (ESCs) (isolated and cultured according to the method of claim 1 in CN 1253558C) and packaged by recombination into epidermal stem cells expressing the ESCS-higher gene. Stably transfected stem cells were used for subsequent gene editing applications as identified by PCR screening.
Example 3 analysis of the use of CRISPR/Cas9 in epidermal Stem cells
The sgRNA expression plasmid prepared in example 1, the well-known Cas9 expression plasmid, was co-transfected into epidermal stem cells. Lipofectamine is prepared by transfecting the constructed epidermal stem cell with liposome transfection method and using Lipofectamine as reagentTM2000 (invitrogen) and the detailed steps of transfection are described in the instructions for transfection. Stem cells not transfected with the enhanced gene of example 2 were used as positive controls.
Example 4Western-blot detection of GINS2 protein expression
1. Total protein extraction
Cultured cell lysis
(1) And (3) removing the adherent cells of the epidermal stem cells, removing the culture solution, washing once with PBS, suspending the cells, centrifugally collecting, and washing once with PBS.
(2) Usually, 0.1ml RIPA buffer is added to every 106 cells, and the lysate is brought into contact with the cells.
(3) The cells were fully lysed by gentle blowing with a pipette tip after a few minutes on ice, and the lysate was then poured onto one side or corner of a petri dish by gentle tilting, then transferred to a 1.5ml centrifuge tube and shaken vigorously for 30 seconds.
(4) Centrifuging at 4 deg.C for 5min at 12,000 Xg, and collecting supernatant for subsequent electrophoresis, Western or immunoprecipitation.
Tissue mass lysis
(1) The tissue is sheared into fine fragments. 1ml of RIPA lysate was added per 100 mg of tissue. Homogenize manually 20 times up and down with a glass homogenizer.
(2) The homogenate was transferred to a 1.5ml centrifuge tube.
(3) Centrifuging at 4 deg.C for 5min at 12,000 Xg, and collecting supernatant for subsequent electrophoresis, Western or immunoprecipitation.
2. Protein concentration determination (BCA protein concentration determination)
Preparation of working fluid
(1) Before the measurement, the mixture was mixed at a ratio of BCA Reagent A to BCA Reagent B of 100:1 to prepare a working solution, and for example, when 30ml of the working solution was prepared, 0.3ml of BCA Reagent B was added to 30ml of BCA Reagent A, and the thus prepared working solution was sufficiently shaken and mixed, and then stored at 4 ℃ for three days.
(2) The required working fluid amount is calculated as follows:
total volume (ml) of working solution required to be [ (8 parts or 7 parts of BSA standard solution + number of samples to be detected) × parallel number of samples (n) +1] × 1 sample
Example) standard procedure [ 1ml reaction system ] when the number of samples tested is 12, replicates (n ═ 2): [ (8+12) × 2+1] × 1ml ═ 41ml
Example) standard procedure [ 200 μ l reaction system ], number of samples tested 20, replicates (n ═ 2): [ (8+20) × 2+1] × 0.2ml ═ 11.4ml
Example) procedure for low concentration protein sample determination [ 1ml reaction system ], number of samples tested 12, parallel sample (n ═ 2): [ (7+12) × 2+1] × 0.5ml ═ 19.5ml
3. Standard operation procedure of low concentration protein sample (quantitative range: 0-200 mug/ml)
[ 0.2ml reaction System, assay Using microwell plates ]
1) And (3) preparing a BSA standard solution.
(1) Preparation of 0.2mg/ml BSA standard solution: mu.l BSA Standard Solution (2mg/ml) was added to 1,080. mu.l of the dilution and mixed well.
(2) The BSA standard solution was diluted at different concentrations, and deionized water, 0.9% NaCl, or PBS was used for dilution of the BSA standard solution and the test sample.
2) Preparation of BSA Standard Curve
(1) 100. mu.l of the diluted BSA standard solutions were added to the plate, and 2 replicates were taken at each concentration.
(2) After 100ul of working solution was added, the mixture was immediately mixed.
(3) After reacting in a 37 ℃ water bath for 60 minutes, the mixture was cooled to room temperature.
(4) The absorbance value at 562nm was measured using a spectrophotometer. For the measurement, a 1mL cuvette was used and the water was used for zero calibration. All samples were tested as soon as possible within 20 minutes.
(5) The absorbance value of the BSA standard solution at each concentration was subtracted by the average value of the Blank values, and a standard curve of the BSA standard solution was plotted.
3) Determination of test sample
When the sample is detected, the sample is recommended to be detected simultaneously with the BSA standard solution.
(1) 100 mul of each sample was added to the microplate and 2 replicates of each sample were tested.
(if necessary, measurement can be made after diluting the test sample by the same dilution method as that for the BSA standard solution)
(2) After adding 100. mu.l of the working solution, mix well immediately.
(3) After reacting in a water bath at 37 ℃ for 60 minutes, the reaction mixture was cooled to room temperature.
(4) The microplate reader wavelength was set at 562nm for the determination. Zero calibration with water. All samples were tested as soon as possible within 20 minutes.
(5) The absorbance value of each sample solution was subtracted by the average value of Blank values, and the protein concentration of the test sample was calculated from the standard curve.
SDS-PAGE electrophoresis
(1) The glass plates are aligned and then placed into a clamp for clamping. The card is then vertically mounted on a rack ready for potting.
(2) Preparing 10% separation gel, adding TEMED, immediately shaking up, and filling gel.
(3) When there is a line of refraction between the water and the gel, the gel is said to have solidified. Waiting for 3min for the glue to solidify sufficiently, pouring off the water on the upper layer of the glue, and sucking the water with absorbent paper.
(4) 4 percent of concentrated glue is prepared, and the concentrated glue is immediately shaken up after TEMED is added, so that glue can be filled. The remaining space was filled with the gel concentrate and a comb was then inserted into the gel concentrate.
(5) The concentrated gel was washed with water and placed in an electrophoresis tank. (small glass plate face is inward, big glass plate face is outward if only run a piece of glue, the another side of that groove will be filled with a plastic board and the face that has the word is outward.) (6) take out the sample loading sample and 5 x SDS buffer solution of sample loading according to 4: mixing at a ratio of 1, mixing, and decocting in boiling water for 5min to denature protein.
(7) Adding sufficient electrophoresis solution, and loading the same amount of protein.
(8) And (4) electrophoresis, wherein after 80V runs through the concentrated gel, the voltage is converted to 120V, and when bromophenol blue runs to the bottom of the gel plate, the bromophenol blue just does not run out.
(9) Opening the clamp to keep the black side horizontal, and sequentially filling a sponge pad, filter paper, glue, a PVDF membrane (activated by methanol), the filter paper and the sponge pad on the clamp; and simultaneously, the electrophoretic solution is changed into transfer solution.
(10) The current was regulated to a constant current of 200mA for about 1 hour of transfer.
(11) The membrane was removed and front and back labeled, washed in TBST for 1 minute, and then blocked with blocking solution.
(12) Diluting the corresponding primary antibody to a certain concentration (1:500) by using a confining liquid, wherein the final dilution concentration of the internal reference primary antibody is 1:3000, then incubated for 1.5 hours or overnight at 4 ℃.
(13) The washing was performed 3 times for 5 minutes each with TBST.
(14) The secondary antibody was diluted to a certain concentration (1:3000) with blocking solution and then incubated for 1.5 hours.
(15) Wash 4 times 5 minutes each with TBST.
5. Chemiluminescence, development, and fixation
(1) The reagents A and B were mixed in equal volumes in a test tube and then applied to the front of the PVDF membrane and incubated for approximately 2 minutes.
(2) And (4) entering a dark room, covering a layer of preservative film on the PVDF film, and wiping off the redundant luminous agent. The film is pressed on the preservative film, and different exposure time is selected according to the intensity of the light emission.
(3) And (3) putting the film into a developing solution, immediately putting the film into a fixing solution after a strip appears, washing the film with running water, and drying the film.
(4) The film was scanned and the grey values of the bands of interest were analyzed using the UVP gel image processing system labworks4.6 software.
(5) Detecting the expression of the GINS2 protein in the transfected epidermal stem cells by Western-blot, wherein the result is shown in figure 1, and the expression of the protein is not influenced by the blank control of the epidermal stem cells; the gRNA1 without the introduced synergistic protein can knock out a target gene, and the protein expression has certain influence; the gRNA7 introduced with the synergistic protein has the obvious effect of improving the gene knockout effect and the protein inhibition rate reaches 92.1 percent; the protein expression inhibition rate of the gRNA23 introduced with the synergistic protein reaches 91.0%, and the effect is extremely obvious. Has excellent application prospect and application value.
Finally, it should be noted that the above embodiments are only for illustrating the technical solutions of the present invention and not for limiting, and although the present invention is described in detail with reference to the preferred embodiments, it should be understood by those skilled in the art that modifications or equivalent substitutions may be made on the technical solutions of the present invention without departing from the spirit and scope of the technical solutions of the present invention.
Sequence listing
<110> Luoyang Xuan Zhi Biotech Co., Ltd
<120> GING2 gene knockout in epidermal stem cells by using CRISPR-Cas system
<160>4
<170>SIPOSequenceListing 1.0
<210>1
<211>2280
<212>DNA
<213> Artificial sequence (2 Ambystoma latex x Ambystoma jeffersonia)
<400>1
atgatatact ttattagaat aatcatgggc cagactggga agaaatctga gaagggacca 60
gtttgttggc ggaagcgtgt aaaatcagag tacatgcgac tgagacagct caagaggttc 120
agacgagctg atgaagtaaa gagtatgttt agttccaatc gtcagaaaat tttggaaaga 180
acggaaatct taaaccaaga atggaaacag cgaaggatac agcctgtgca catcctgact 240
tctgtgagct cattgcgcgg gactagggag tgttcggtga ccagtgactt ggattttcca 300
acacaagtca tcccattaaa gactctgaat gcagttgctt cagtacccat aatgtattct 360
tggtctcccc tacagcagaa ttttatggtg gaagatgaaa ctgttttaca taacattcct 420
tatatgggag atgaagtttt agatcaggat ggtactttca ttgaagaact aataaaaaat 480
tatgatggga aagtacacgg ggatagagaa tgtgggttta taaatgatga aatttttgtg 540
gagttggtga atgcccttgg tcaatataat gatgatgacg atgatgatga tggagacgat 600
cctgaagaaa gagaagaaaa gcagaaagat ctggaggatc accgagatga taaagaaagc 660
cgcccacctc ggaaatttcc ttctgataaa atttttgaag ccatttcctc aatgtttcca 720
gataagggca cagcagaaga actaaaggaa aaatataaag aactcaccga acagcagctc 780
ccaggcgcac ttcctcctga atgtaccccc aacatagatg gaccaaatgc taaatctgtt 840
cagagagagc aaagcttaca ctcctttcat acgcttttct gtaggcgatg ttttaaatat 900
gactgcttcc tacatcgtaa gtgcaattat tcttttcatg caacacccaa cacttataag 960
cggaagaaca cagaaacagc tctagacaac aaaccttgtg gaccacagtg ttaccagcat 1020
ttggagggag caaaggagtt tgctgctgct ctcaccgctg agcggataaa gaccccacca 1080
aaacgtccag gaggccgcag aagaggacgg cttcccaata acagtagcag gcccagcacc 1140
cccaccatta atgtgctgga atcaaaggat acagacagtg atagggaagc agggactgaa 1200
acggggggag agaacaatga taaagaagaa gaagagaaga aagatgaaac ttcgagctcc 1260
tctgaagcaa attctcggtg tcaaacacca ataaagatga agccaaatat tgaacctcct 1320
gagaatgtgg agtggagtgg tgctgaagcc tcaatgttta gagtcctcat tggcacttac 1380
tatgacaatt tctgtgccat tgctaggtta attgggacca aaacatgtag acaggtgtat 1440
gagtttagag tcaaagaatc tagcatcata gctccagctc ccgctgagga tgtggatact 1500
cctccaagga aaaagaagag gaaacaccgg ttgtgggctg cacactgcag aaagatacag 1560
ctgaaaaagg acggctcctc taaccatgtt tacaactatc aaccctgtga tcatccacgg 1620
cagccttgtg acagttcgtg cccttgtgtg atagcacaaa atttttgtga aaagttttgt 1680
caatgtagtt cagagtgtca aaaccgcttt ccgggatgcc gctgcaaagc acagtgcaac 1740
accaagcagt gcccgtgcta cctggctgtc cgagagtgtg accctgacct ctgtcttact 1800
tgtggagccg ctgaccattg ggacagtaaa aatgtgtcct gcaagaactg cagtattcag 1860
cggggctcca aaaagcatct attgctggca ccatctgacg tggcaggctg ggggattttt 1920
atcaaagatc ctgtgcagaa aaatgaattc atctcagaat actgtggaga gattatttct 1980
caagatgaag ctgacagaag agggaaagtg tatgataaat acatgtgcag ctttctgttc 2040
aacttgaaca atgattttgt ggtggatgca acccgcaagg gtaacaaaat tcgttttgca 2100
aatcattcgg taaatccaaa ctgctatgca aaagttatga tggttaacgg tgatcacagg 2160
ataggtattt ttgccaagag agccatccag actggcgaag agctgttttt tgattacaga 2220
tacagccagg ctgatgccct gaagtatgtc ggcatcgaaa gagaaatgga aatcccttga 2280
<210>2
<211>759
<212>PRT
<213> Artificial sequence (2 Ambystoma latex x Ambystoma jeffersonia)
<400>2
Met Ile Tyr Phe Ile Arg Ile Ile Met Gly Gln Thr Gly Lys Lys Ser
1 5 10 15
Glu Lys Gly Pro Val Cys Trp Arg Lys Arg Val Lys Ser Glu Tyr Met
20 25 30
Arg Leu Arg Gln Leu Lys Arg Phe Arg Arg Ala Asp Glu Val Lys Ser
35 40 45
Met Phe Ser Ser Asn Arg Gln Lys Ile Leu Glu Arg Thr Glu Ile Leu
50 55 60
Asn Gln Glu Trp Lys Gln Arg Arg Ile Gln Pro Val His Ile Leu Thr
65 70 75 80
Ser Val Ser Ser Leu Arg Gly Thr Arg Glu Cys Ser Val Thr Ser Asp
85 90 95
Leu Asp Phe Pro Thr Gln Val Ile Pro Leu Lys Thr Leu Asn Ala Val
100 105 110
Ala Ser Val Pro Ile Met Tyr Ser Trp Ser Pro Leu Gln Gln Asn Phe
115 120 125
Met Val Glu Asp Glu Thr Val Leu His Asn Ile Pro Tyr Met Gly Asp
130 135 140
Glu Val Leu Asp Gln Asp Gly Thr Phe Ile Glu Glu Leu Ile Lys Asn
145 150 155 160
Tyr Asp Gly Lys Val His Gly Asp Arg Glu Cys Gly Phe Ile Asn Asp
165 170 175
Glu Ile Phe Val Glu Leu Val Asn Ala Leu Gly Gln Tyr Asn Asp Asp
180 185 190
Asp Asp Asp Asp Asp Gly Asp Asp Pro Glu Glu Arg Glu Glu Lys Gln
195 200 205
Lys Asp Leu Glu Asp His Arg Asp Asp Lys Glu Ser Arg Pro Pro Arg
210 215 220
Lys Phe Pro Ser Asp Lys Ile Phe Glu Ala Ile Ser Ser Met Phe Pro
225 230 235 240
Asp Lys Gly Thr Ala Glu Glu Leu Lys Glu Lys Tyr Lys Glu Leu Thr
245 250 255
Glu Gln Gln Leu Pro Gly Ala Leu Pro Pro Glu Cys Thr Pro Asn Ile
260 265 270
Asp Gly Pro Asn Ala Lys Ser Val Gln Arg Glu Gln Ser Leu His Ser
275 280 285
Phe His Thr Leu Phe Cys Arg Arg Cys Phe Lys Tyr Asp Cys Phe Leu
290 295 300
His Arg Lys Cys Asn Tyr Ser Phe His Ala Thr Pro Asn Thr Tyr Lys
305 310 315 320
Arg Lys Asn Thr Glu Thr Ala Leu Asp Asn Lys Pro Cys Gly Pro Gln
325 330 335
Cys Tyr Gln His Leu Glu Gly Ala Lys Glu Phe Ala Ala Ala Leu Thr
340 345 350
Ala Glu Arg Ile Lys Thr Pro Pro Lys Arg Pro Gly Gly Arg Arg Arg
355 360 365
Gly Arg Leu Pro Asn Asn Ser Ser Arg Pro Ser Thr Pro Thr Ile Asn
370 375 380
Val Leu Glu Ser Lys Asp Thr Asp Ser Asp Arg Glu Ala Gly Thr Glu
385 390 395 400
Thr Gly Gly Glu Asn Asn Asp Lys Glu Glu Glu Glu Lys Lys Asp Glu
405 410 415
Thr Ser Ser Ser Ser Glu Ala Asn Ser Arg Cys Gln Thr Pro Ile Lys
420 425 430
Met Lys Pro Asn Ile Glu Pro Pro Glu Asn Val Glu Trp Ser Gly Ala
435 440 445
Glu Ala Ser Met Phe Arg Val Leu Ile Gly Thr Tyr Tyr Asp Asn Phe
450 455 460
Cys Ala Ile Ala Arg Leu Ile Gly Thr Lys Thr Cys Arg Gln Val Tyr
465 470 475 480
Glu Phe Arg Val Lys Glu Ser Ser Ile Ile Ala Pro Ala Pro Ala Glu
485 490 495
Asp Val Asp Thr Pro Pro Arg Lys Lys Lys Arg Lys His Arg Leu Trp
500 505 510
Ala Ala His Cys Arg Lys Ile Gln Leu Lys Lys Asp Gly Ser Ser Asn
515 520 525
His Val Tyr Asn Tyr Gln Pro Cys Asp His Pro Arg Gln Pro Cys Asp
530 535 540
Ser Ser Cys Pro Cys Val Ile Ala Gln Asn Phe Cys Glu Lys Phe Cys
545 550 555 560
Gln Cys Ser Ser Glu Cys Gln Asn Arg Phe Pro Gly Cys Arg Cys Lys
565 570 575
Ala Gln Cys Asn Thr Lys Gln Cys Pro Cys Tyr Leu Ala Val Arg Glu
580 585 590
Cys Asp Pro Asp Leu Cys Leu Thr Cys Gly Ala Ala Asp His Trp Asp
595 600 605
Ser Lys Asn Val Ser Cys Lys Asn Cys Ser Ile Gln Arg Gly Ser Lys
610 615 620
Lys His Leu Leu Leu Ala Pro Ser Asp Val Ala Gly Trp Gly Ile Phe
625 630 635 640
Ile Lys Asp Pro Val Gln Lys Asn Glu Phe Ile Ser Glu Tyr Cys Gly
645 650 655
Glu Ile Ile Ser Gln Asp Glu Ala Asp Arg Arg Gly Lys Val Tyr Asp
660 665 670
Lys Tyr Met Cys Ser Phe Leu Phe Asn Leu Asn Asn Asp Phe Val Val
675 680 685
AspAla Thr Arg Lys Gly Asn Lys Ile Arg Phe Ala Asn His Ser Val
690 695 700
Asn Pro Asn Cys Tyr Ala Lys Val Met Met Val Asn Gly Asp His Arg
705 710 715 720
Ile Gly Ile Phe Ala Lys Arg Ala Ile Gln Thr Gly Glu Glu Leu Phe
725 730 735
Phe Asp Tyr Arg Tyr Ser Gln Ala Asp Ala Leu Lys Tyr Val Gly Ile
740 745 750
Glu Arg Glu Met Glu Ile Pro
755
<210>3
<211>20
<212>DNA
<213> Artificial sequence (2 Ambystoma latex x Ambystoma jeffersonia)
<400>3
aatgcccagc ccttactaca 20
<210>4
<211>20
<212>DNA
<213> Artificial sequence (2 Ambystoma latex x Ambystoma jeffersonia)
<400>4
tgcatggaag ccatcacact 20

Claims (3)

1. A CRISPR-CAS system for epidermal stem cell GINS2 gene editing, characterized in that: the system comprises the following components: (1) for expressing SEQ ID NO:1, the plasmid of ESCS-higher; (2) expresses SEQ ID NO: 3 or 4, sgRNA shown and PX330 plasmid of Cas 9.
2. The system of claim 1, wherein: (1) the plasmid (2) is introduced into a gene-editing cell in advance, and after a positive cell is obtained by screening, the plasmid (2) is transferred.
3. Use of the system of claim 1 for the preparation of an agent for epidermal stem cell GINS2 gene editing.
CN201810570225.9A 2018-06-05 2018-06-05 GING2 gene knockout in epidermal stem cells by using CRISPR-Cas system Active CN108715850B (en)

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* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20150044192A1 (en) 2013-08-09 2015-02-12 President And Fellows Of Harvard College Methods for identifying a target site of a cas9 nuclease
US9359599B2 (en) 2013-08-22 2016-06-07 President And Fellows Of Harvard College Engineered transcription activator-like effector (TALE) domains and uses thereof
US9388430B2 (en) 2013-09-06 2016-07-12 President And Fellows Of Harvard College Cas9-recombinase fusion proteins and uses thereof
US9340799B2 (en) 2013-09-06 2016-05-17 President And Fellows Of Harvard College MRNA-sensing switchable gRNAs
US9526784B2 (en) 2013-09-06 2016-12-27 President And Fellows Of Harvard College Delivery system for functional nucleases
US9840699B2 (en) 2013-12-12 2017-12-12 President And Fellows Of Harvard College Methods for nucleic acid editing
WO2016022363A2 (en) 2014-07-30 2016-02-11 President And Fellows Of Harvard College Cas9 proteins including ligand-dependent inteins
US20190225955A1 (en) 2015-10-23 2019-07-25 President And Fellows Of Harvard College Evolved cas9 proteins for gene editing
KR102547316B1 (en) 2016-08-03 2023-06-23 프레지던트 앤드 펠로우즈 오브 하바드 칼리지 Adenosine nucleobase editing agents and uses thereof
AU2017308889B2 (en) 2016-08-09 2023-11-09 President And Fellows Of Harvard College Programmable Cas9-recombinase fusion proteins and uses thereof
US11542509B2 (en) 2016-08-24 2023-01-03 President And Fellows Of Harvard College Incorporation of unnatural amino acids into proteins using base editing
KR20240007715A (en) 2016-10-14 2024-01-16 프레지던트 앤드 펠로우즈 오브 하바드 칼리지 Aav delivery of nucleobase editors
US10745677B2 (en) 2016-12-23 2020-08-18 President And Fellows Of Harvard College Editing of CCR5 receptor gene to protect against HIV infection
US11898179B2 (en) 2017-03-09 2024-02-13 President And Fellows Of Harvard College Suppression of pain by gene editing
EP3592777A1 (en) 2017-03-10 2020-01-15 President and Fellows of Harvard College Cytosine to guanine base editor
US11268082B2 (en) 2017-03-23 2022-03-08 President And Fellows Of Harvard College Nucleobase editors comprising nucleic acid programmable DNA binding proteins
US11560566B2 (en) 2017-05-12 2023-01-24 President And Fellows Of Harvard College Aptazyme-embedded guide RNAs for use with CRISPR-Cas9 in genome editing and transcriptional activation
WO2019023680A1 (en) 2017-07-28 2019-01-31 President And Fellows Of Harvard College Methods and compositions for evolving base editors using phage-assisted continuous evolution (pace)
WO2019139645A2 (en) 2017-08-30 2019-07-18 President And Fellows Of Harvard College High efficiency base editors comprising gam
US11795443B2 (en) 2017-10-16 2023-10-24 The Broad Institute, Inc. Uses of adenosine base editors
CA3130488A1 (en) 2019-03-19 2020-09-24 David R. Liu Methods and compositions for editing nucleotide sequences
GB2614813A (en) 2020-05-08 2023-07-19 Harvard College Methods and compositions for simultaneous editing of both strands of a target double-stranded nucleotide sequence

Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN107619829A (en) * 2017-10-14 2018-01-23 洛阳轩智生物科技有限公司 The method for carrying out GINS2 gene knockouts to mescenchymal stem cell using CRISPR cas systems
CN108707604A (en) * 2018-05-30 2018-10-26 洛阳轩智生物科技有限公司 CNE10 gene knockouts are carried out using CRISPR-Cas systems in epidermal stem cells

Patent Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN107619829A (en) * 2017-10-14 2018-01-23 洛阳轩智生物科技有限公司 The method for carrying out GINS2 gene knockouts to mescenchymal stem cell using CRISPR cas systems
CN108707604A (en) * 2018-05-30 2018-10-26 洛阳轩智生物科技有限公司 CNE10 gene knockouts are carried out using CRISPR-Cas systems in epidermal stem cells

Non-Patent Citations (2)

* Cited by examiner, † Cited by third party
Title
NCBI Reference Sequence:XM_007981541.1;无;《Genbank》;20140514;1-2页 *
NCBI Reference Sequence:XM_017011817.2;无;《Genbank》;20180326;1-3页 *

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