CN105039519A - 一种基于足点域杂交的dna测定新方法 - Google Patents
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Abstract
一种基于足点域杂交的DNA测定新方法,属于化学发光技术领域。将目标DNA加入DNA1修饰磁珠中,目标DNA的一端与DNA1的一端单链部分杂交形成足点域,在足点域作用下目标DNA未杂交的部分与DNA1继续进行杂交反应,将DNA1的发卡结构打开,同时形成双链DNA,再加入FITC标记DNA2探针,DNA2的一端与所形成的双链DNA的一端单链部分杂交形成足点域,在足点域的作用下DNA2未杂交的部分与双链DNA继续进行杂交反应,形成新的双链DNA,将目标DNA替换下来进行循环利用,并将大量的DNA2附着在磁珠上,利用光二极管诱导化学发光原理实现对目标DNA的测定。本发明方法简单、成本低、灵敏度高。
Description
技术领域
本发明属于化学发光技术领域,涉及一种基于足点域杂交的DNA测定新方法。
背景技术
DNA催化自组装技术是在DNA链式杂交反应技术的基础上发展而来的一种放大技术。它不同于DNA链式杂交反应技术中需要两条发卡DNA,而是涉及了一条或者多条发卡DNA。近年来DNA测定方法主要有化学发光法(ZhangX,LiuH,LiR,ZhangN,XiongY,NiuS.ChemiluminescencedetectionofDNA/microRNAbasedoncation-exchangeofCuSnanoparticlesandrollingcircleamplification.ChemCommun.2015.DOI:10.1039/C5CC01317H);电化学法(LiuL,SongC,ZhangZ,YangJ,ZhouL,ZhangX,XieG.UltrasensitiveelectrochemicaldetectionofmicroRNA-21combininglayerednanostructureofoxidizedsingle-walledcarbonnanotubesandnanodiamondsbyhybridizationchainreaction.BiosensBioelectron.2015,28;70:351-357);荧光法(WangQ,WangW,LeiJ,XuN,GaoF,JuH.AnalChem.FluorescencequenchingofcarbonnitridenanosheetthroughitsinteractionwithDNAforversatilefluorescencesensing.2013.17;85(24):12182-12188);光度法(ThavanathanJ,HuangNM,ThongKL.ColorimetricdetectionofDNAhybridizationbasedonadualplatformofgoldnanoparticlesandgrapheneoxide.BiosensBioelectron.2014.15;55:91-98);表面等离子共振法(SzuneritsS,MaalouliN,WijayaE,VilcotJP,BoukherroubR.Recentadvancesinthedevelopmentofgraphene-basedsurfaceplasmonresonance(SPR)interfaces.AnalBioanalChem.2013,405(5):1435-43)等。
但是,这些方法各有其优缺点,本发明利用有DNA1标记的磁珠为载体,以异硫氰酸荧光素FITC为标记物,利用DNA取代反应,实现了目标DNA的循环利用,从而实现了信号的循环放大,并最终实现了对目标DNA的高灵敏度测定,具有方法简单、灵敏度高,成本低的优点。
发明内容
本发明目的是提供一种基于足点域杂交的DNA测定新方法,利用DNA1标记的磁珠为载体,以异硫氰酸荧光素FITC标记DNA2为探针,当目标DNA加入DNA1修饰磁珠溶液中时,目标DNA的一端与DNA1的一端单链部分杂交形成足点域,在足点域的作用下目标DNA未杂交的部分与DNA1继续进行杂交反应,将DNA1的发卡结构打开,同时形成双链DNA,然后加入FITC标记DNA2探针,DNA2的一端与所形成的双链DNA的一端单链部分杂交又形成足点域,在足点域的作用下DNA2未杂交的部分与双链DNA继续进行杂交反应,形成新的双链DNA,将DNA2附着在磁珠上,同时,将目标DNA替换下来,被替换下来的目标DNA进行下一个双链的形成,并使另外一条DNA2附着在磁珠上,如此目标DNA被循环利用,同时将大量的DNA2附着在磁珠上,利用光二极管诱导化学发光原理,利用化学发光仪检测化学发光强度,根据化学发光强度实现对目标DNA的测定。
技术方案
一种基于足点域杂交的DNA测定新方法,其特征在于根据目标DNA序列,设计好有特定序列的发卡DNA1,发卡DNA2,并利用DNA1标记的磁珠为载体,以异硫氰酸荧光素FITC标记的DNA2为探针,利用足点域杂交反应实现目标DNA的循环使用,同时实现了信号的循环放大,最终实现了对目标DNA的测定。测定步骤如下:
(1)磁珠的前处理
取10μL链霉亲和素修饰的磁珠至1.5mL的离心管中,用100μLpH8.0的Tris-HCl缓冲溶液清洗两遍,然后将其分散到Tris-HCl缓冲溶液中。
(2)发卡DNA的前处理
发卡DNA在使用之前在95℃温度下孵化2min,并逐步降至室温。
(3)捕获DNA1在磁珠表面的固定
在含10μL链霉亲和素修饰的磁珠的1.5mL的离心管中,加入10μL1.0×10-5M的生物素修饰的DNA1,在37℃下振荡反应30min,并用100μLpH6.8的磷酸缓冲溶液洗涤两遍,得到DNA1修饰磁珠,并分散到1mL的磷酸缓冲溶液中。
(4)目标DNA检测
取(3)所得磁珠溶液100μL,并加入含有目标DNA的样品溶液100μL,然后再加入100μL含有1.0×10-7MDNA2的pH为6.8的磷酸缓冲溶液,并在37℃振荡反应1h。然后进行磁分离,除去上清液后,将磁珠用100μLpH6.8的磷酸缓冲溶液洗涤两遍,并将其分散于100μLpH6.8的磷酸缓冲溶液中。再加入200μLpH11.3的鲁米诺溶液,打开光二极管,15秒后关闭光二极管,用化学发光仪检测化学发光信号,根据化学发光信号强度对目标物进行定量分析。
本发明的化学试剂优选分析纯试剂,所有溶液均用二次蒸馏水配置。
本发明的0.2MpH6.8磷酸缓冲溶液的配制方法:称取0.2gKH2PO4、2.9gNa2HPO4·12H2O溶解于1L水中。
Tris-HCl缓冲溶液配制方法:称取2.429g三(羟甲基)氨基甲烷,用500mL超纯水溶解后,用0.1M盐酸调pH至8.0,最后用超纯水稀释至1000mL。
所用人工合成DNA序列(购自北京赛百盛生物工程有限公司)如下。
DNA的部分序列如下:
DNA1:5’-biotin-GCGGTAGGCCGTCCTAATCTCCTCCCCCAACACGGCC-3
DNA2:5’-GTTGGGGGAGGAGATTAGGACGGCC-FITC-3’
目标DNA:5’-AGATTAGGACGGCCTACCGC-3’
本发明的化学发光测定选用MPI-E型化学发光分析系统(西安瑞迈分析仪器有限公司)。
本发明的振荡孵育选用THZ-82A气浴恒温振荡器(全坛市医疗仪器厂)。
本发明的离心机选用Anke-TGL-16C飞翁牌高速离心机(上海市安亭科学仪器厂)。
本发明的pH测量选用PHS-3D型酸度计(上海雷磁仪器厂)。
本发明的显著效果
本发明实现了目标DNA的循环使用,同时实现了信号的循环放大,最终实现了对目标DNA的测定,得到了检测目标DNA的标准曲线,线性范围及线性方程。
当目标DNA的浓度在1.0pM-700pM之间时,随着目标DNA浓度的变化,化学发光强度有明显变化。经计算得到检测目标DNA的线性方程为ICL=9.8136x+59.506(ICL是体系的化学发光强度;x是目标DNA的浓度,pM;n=12,n表示同一浓度测定次数,R=0.9997),检测限是0.5pM。同时,考察了利用三明治夹心法测定目标DNA的检测限为500pM,基于足点域杂交的DNA测定方法检测限较三明治夹心法的低1000倍,表明该方法的灵敏度高。
该测定方法的精密度通过对浓度为30.0pM的目标DNA进行11次平行测定而计算得出,相对标准偏差为3.9%,表明本发明的测定方法有较好的重现性。
附图说明
图1.测定目标DNA的方法原理示意图。
图2.目标DNA标准曲线,横坐标是目标DNA浓度,单位是pM,纵坐标ICL是体系的化学发光强度。
具体实施方式
按照技术方案的步骤(1)至(4)得到目标DNA标准曲线见图2。DNA由赛百盛基因技术有限公司(上海,中国)合成。实验所用其他试剂均为分析纯,并且不用对其进一步纯化可以直接使用。
根据发明的方法对目标DNA含量进行了测定,并采用标准加入法对方法进行了评价,样品测定回收率为96.0–103.4%,测定结果见表1,本发明的方法在目标DNA检测中具有精密度高的特点。
表1.样品分析测定结果
编号 | 含量a,b | 标准样品加入量 | 测得量 | 回收率(%) |
1 | 3.2 | 5.0 | 8.1 | 96.0 |
2 | 27.6 | 30.0 | 58.3 | 102.3 |
3 | 46.9 | 50.0 | 98.6 | 103.4 |
a7次测量结果
b单位:pM
Claims (3)
1.一种基于足点域杂交的DNA测定新方法,其特征包括以下步骤:
a.发卡DNA在使用之前在95℃温度下孵化2min,并逐步降至室温;
b.取10μL链霉亲和素修饰的磁珠至1.5mL的离心管中,用100μLpH8.0的Tris-HCl缓冲溶液清洗两遍,然后将其分散到Tris-HCl缓冲溶液中;
c.在含10μL链霉亲和素修饰的磁珠的1.5mL的离心管中,加入10μL1.0×10-5M的生物素修饰的DNA1,在37℃下振荡反应30min,并用100μLpH6.8的磷酸缓冲溶液洗涤两遍,得到DNA1修饰磁珠,并分散到1mL的磷酸缓冲溶液中;
d.取c所得磁珠溶液100μL,并加入含有目标DNA的样品溶液100μL,然后再加入100μL含有1.0×10-7MDNA2的pH为6.8的磷酸缓冲溶液,并在37℃振荡反应1h;然后进行磁分离,除去上清液后,将磁珠用100μLpH6.8的磷酸缓冲溶液洗涤两遍,并将其分散于100μLpH6.8的磷酸缓冲溶液中;再加入200μLpH11.3的鲁米诺溶液,打开光二极管,15秒后关闭光二极管,用化学发光仪检测化学发光信号,根据化学发光信号强度对目标物进行定量分析。
2.根据权利要求1的测定DNA的方法,其特征在于所述的磁珠粒径为0.4-0.6μm,浓度为8-12mg/mL。
3.根据权利要求1的测定DNA的方法,其特征在于所述的DNA1、DNA2和目标DNA的部分序列如下:
DNA1:5’-biotin-GCGGTAGGCCGTCCTAATCTCCTCCCCCAACACGGCC-3
DNA2:5’-GTTGGGGGAGGAGATTAGGACGGCC-FITC-3’
目标DNA:5’-AGATTAGGACGGCCTACCGC-3’
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