Embodiment
In order to make object of the present invention, technical scheme and advantage clearly understand, below in conjunction with drawings and Examples, the present invention is further elaborated.Should be appreciated that specific embodiment described herein only in order to explain the present invention, be not intended to limit the present invention.
The clone of embodiment 1 Mercuric chloride antibacterial peptide gene
1, Mercuric chloride skin mucus Total RNAs extraction
Extract centrifuge tube used, rifle head, gun case etc. all to spend the night and autoclaving process through 0.1%DEPC water soaking, mortar used, glass homogenizer, tweezers and scissors are all through 180 DEG C of pyroprocessing 2.5h.
Concrete operation step is:
Get Mercuric chloride skin mucus sample to be about 100mg and to add liquid nitrogen grinding powdered, pour in glass homogenizer
↓ add the further ground sample of 1ml Trizol Reagent
Homogenised sample is transferred to 1.5mlEP and manages (DEPC pipe) 15 ~ 30 DEG C placement 5min
↓ add 200 μ l chloroforms, thermal agitation 3min, 4 DEG C, the centrifugal 15min of 12000 × g
Draw supernatant to new centrifuge tube add isopyknic Virahol with supernatant, room temperature leaves standstill 10min
↓ 4 DEG C, the centrifugal 10min of 12000 × g
Abandon supernatant and add 1ml 75% ethanol purge precipitation
↓ 4 DEG C, the centrifugal 10min of 7500 × g
Abandon supernatant, room temperature is placed dry, and add DEPC water 20 ~ 50 μ l and dissolve ,-70 DEG C save backup.
2, RNA concentration determination:
The total serum IgE getting the above-mentioned DEPC of the being dissolved in water of 1 μ l is placed in Nanodrop 2000c and measures RNA concentration.Be 1 μ g according to added RNA template consumption during surveyed RNA concentration adjustment reverse transcription.
3, RNA reverse transcription:
Prepare cDNA building-up reactions system according to following and carry out reverse transcription reaction.
Reaction conditions:
42℃1h
↓
70℃15min
After reaction terminates, reaction solution is stored in-20 DEG C and is used for pcr amplification.
4, design of primers and pcr amplification condition:
According to homology species encodes district's conserved sequence and N-terminal sequencing results such as the batrachias of having announced in GenBanK, utilize Premier 5.0 software design upstream and downstream primer.
KFB-F:TGTAGGTGCCAAGGGTAG
KFB-R:TGAACAGGTCCACAGAGC
Primer is synthesized by Shanghai Sangon Biological Engineering Technology And Service Co., Ltd.
With antibacterial peptide cDNA for template, carry out pcr amplification, PCR amplification system is as following table:
5, agarose gel electrophoresis:
According to isolation of DNA fragments size, prepare 1% sepharose with 1 × TAE, adding EB when heating and melting is cooled to about 50 DEG C in microwave oven to final concentration is 0.5 μ g/ml, fully pours on the glue plate of miniature electrophoresis chamber by gel after mixing, after cooled and solidified, gel is put into electrophoresis chamber.The sample getting appropriate amount mixes with 6 × electrophoresis sample-loading buffer, uses a certain size DNA Marker during loading.Electrophoretic buffer is 1 × TAE, and voltage is chosen as 120V, stops electrophoresis, observe under ultraviolet transilluminator when tetrabromophenol sulfonphthalein indicating strip moves to gel 2/3 position.
6, DNA gel purifying:
Use Shanghai raw work SanPrep pillar DNA glue to reclaim test kit and reclaim object fragment, concrete steps are as follows:
(1) agarose gel electrophoresis detects also rubber tapping recovery object bar rapidly and brings to 1.5ml centrifuge tube.
(2) the Buffer B2 of blob of viscose weight 3 times is added, 50 DEG C of water-bath 5 ~ 10min colloidal sols.
(3) move in adsorption column by sol solutions, the centrifugal 30s of 8000 × g, outwells liquid in collection tube.
(4) add 500 μ l Wash Solution, the centrifugal 30s of 9000 × g, outwells liquid in collection tube.
(5) repeating step (4) once.
(6) suction attached column is in the centrifugal 1min of 9000 × g.
(7) adsorption column is put into a clean 1.5ml centrifuge tube, add 15 ~ 4l μ Elution Buffer in adsorption film central authorities, after room temperature leaves standstill 1min, centrifugal 1min.Preserve DNA solution in pipe for subsequent use in-20 DEG C.
7, ligation:
By following condition connect in 0.5ml centrifuge tube reaction system and 16 DEG C reaction 4h, connecting fluid be used for transform.10 μ l ligation systems are as follows:
8, the competence preparation of bacillus coli DH 5 alpha:
(1) get the E.coli BL21 bacterium liquid preserved in-80 DEG C of glycerine with the direct libation at an ancient wedding ceremony of aseptic platinum filament, in the line of LB planar surface, be inverted overnight incubation for 37 DEG C;
(2) from picking list bacterium colony LB flat board, be inoculated in 5ml LB liquid nutrient medium, 37 DEG C, 200rmp shakes overnight incubation;
(3) get the bacterium liquid of 100 μ l activated overnight, in access 5ml LB fresh culture, 200rpm 37 DEG C vibrate about 2.5h, to the visible muddiness slightly of naked eyes.
(4) nutrient solution is proceeded to 1.5ml centrifuge tube, ice bath 10min, 4 DEG C of centrifugal 10min of 4000rpm.
(5) abandon supernatant, collect thalline, add the 1.0ml 0.1M CaCl2 of precooling, gently hang, ice bath 10min, 4 DEG C of centrifugal 10min of 4000rpm.
(6) abandon supernatant, add 100 μ l 0.1M CaCl2 (precooling), gently hang, ice bath is at least available after 4h, if think long-term preservation, add sterile glycerol to final concentration 15%, in-70 DEG C of preservations.
9, product conversion is connected:
(1) full dose (10 μ l) is added in 100 μ l competent cells, places 30min in ice.
After (2) 42 DEG C of heating 45s, then place 1min in ice.
(3) 890 μ l LB liquid nutrient mediums are added, 37 DEG C of 200rpm shaking culture 60min.
(4) the centrifugal 1min of 4000rpm, abandons supernatant, stays bacterium liquid, and piping and druming suspends.
(5) be spread evenly across on the LB solid medium flat board containing X-Gal, IPTG, Amp and cultivate.
About 1h is placed in (6) 37 DEG C of incubator fronts, after bacterium liquid is absorbed by substratum completely, is inverted overnight incubation to forming the visible single bacterium colony of naked eyes for 37 DEG C.
(7) the some single colony inoculations of random choose to contain in corresponding antibiotic LB liquid nutrient medium 37 DEG C in 5ml, and 200rmp shaking table is cultivated 4 ~ 6h and is used for bacterium liquid PCR and identifies.
10, bacterium liquid PCR identifies:
With the bacterium liquid cultivated for template, carry out pcr amplification, reaction system is as following table:
amplified production is identified through 1% agarose gel electrophoresis.The correct bacterium liquid of qualification is delivered to Shanghai Sani biotech firm and carries out DNA sequencing.
11, in RACE amplification Mercuric chloride skin mucus, antibacterial peptide gene 3 ' is held and the 5 ' design of primers of holding:
The specificity inner primer of 3 '-RACE and 5 '-RACE is used for according to the part antibacterial peptide gene sequences Design obtained:
5 ' inner primer: CaSPI-F (1): GGGTCTTGATAGATGTCATAGCG
3 ' inner primer: CaSPI-R (1): CTTCAGCGTTGACTTCTCCA
Primer is synthesized by Shanghai Sangon Biological Engineering Technology And Service Co., Ltd.In addition, primer:
3’race outer primer(1):5′-taccgtcgttccactagtgattt-3′
5’race outer primer(1):5′-catggctacatgctgacagccta-3′
3’race inner primer(2):5′-cgcggatcctccactagtgatttcactatagg-3′
5’race inner primer(2):5′-cgcggatccacagcctactgatgatcagtcgatg-3’
Come from TaKaRa 3 '-Full RACE Core Set Ver.2.0 and 5 '-Full RACE Kit respectively.
12、3’RACE:
Utilize TaKaRa 3 '-Full RACE Core Set Ver.2.0 can by known cDNA sequence, highly sensitive, to increase the full length sequence of 3 ' end of cDNA with high specificity.Specific experiment working method is as follows:
(1) reverse transcription reaction.Reaction system and reaction conditions as follows:
Reaction conditions:
42℃1h
↓
70℃15min
For carrying out next step experiment after reaction terminates.
(2) sleeve type PCR reaction
Outer PCR reacts
The experimental implementation using TaKaRa LA Taq to carry out when Outer PCR reacts is as follows:
1) after PCR reaction terminates, the PCR reaction solution getting 5 ~ 10 μ l carries out agarose gel electrophoresis, confirms pcr amplification product.And carry out Inner PCR reaction.
2) Inner PCR reacts.Reaction system and reaction conditions as follows:
(3) agarose gel electrophoresis
After reaction terminates, the PCR reaction solution getting 5 ~ 10 μ l carries out agarose gel electrophoresis, confirms 3 ' RACEPCR amplified production.
(4) sequencing analysis
DNA sequencing (specific experiment operation steps is identical with abovementioned steps 6 ~ 10) will be carried out again after the object product cloning of pcr amplification to pMD-18T carrier.
13、5’RACE:
Utilize 5 '-Full RACE Kit amplification 5 ' end DNA sequence dna, comprise following concrete steps:
(1) phosphatizing treatment.
Alkaline Phosphatase (CIAP) is used to carry out dephosphorization acid-respons to 5 ' phosphate group exposed in Total RNA.
1) by following component preparation dephosphorization acid-respons liquid.
2) 50 DEG C of reaction 1h.
3) in above-mentioned reaction solution, the 3M CH3COONa (pH5.2) of 20 μ l is added, the RNaseFree dH of 130 μ l
2after O, fully mix.
4) phenol/chloroform/primary isoamyl alcohol (25:24:1) of 200 μ l is added, fully the centrifugal 5min of 13000 × g room temperature after mixing, by upper water phase transition in new Microtube.
5) chloroform of 200 μ l is added, fully the centrifugal 5min of 13000 × g room temperature after mixing, by upper water phase transition in new Microtube.
6) Homogeneous phase mixing after the NA Carrier of 2 μ l is added.
7) Virahol of 200 μ l is added, fully after mixing, cooled on ice 10min.
8) 13000 × g, 4 DEG C of centrifugal 20min, abandon supernatant.
9) 70% cold ethanol (the RNase Free dH of 500 μ l is added
2o prepares) rinsing, 13000 × g, 4 DEG C of centrifugal 5min are dry after abandoning supernatant.
10) the RNase Free dH of 7 μ l is added
2o dissolution precipitation, obtains CIAP-treated RNA.
(2) " remove cap " to react.
Use Tobacco Acid Pyrophosphatase (TAP) to remove the 5 ' cap sequence of mRNA, retain a phosphate group.
1) by following component preparation " removing cap " reaction solution.
2) 37 DEG C are reacted 1 hour.
3) this reaction solution is CIAP/TAP-treated RNA.Get 5 μ l for 5 ' RACE Adaptor ligation, remaining 5 μ l are stored in-80 DEG C.
The connection of (3) 5 ' RACE Adaptor.
1) first following solutions is prepared
2) 65 DEG C of insulations placed 2 minutes on ice after 5 minutes, then added following reagent
3) 16 DEG C of reaction 1h.
4) in above-mentioned reaction solution, add the 3M CH of 20 μ l
3cOONa (pH5.2), the RNaseFree dH of 140 μ l
2after O, fully mix.
5) phenol/chloroform/primary isoamyl alcohol (25:24:1) of 200 μ l is added, fully the centrifugal 5min of 13000 × g room temperature after mixing, by upper water phase transition in new Microtube.
6) chloroform of 200 μ l is added, fully the centrifugal 5min of 13000 × g room temperature after mixing, by upper water phase transition in new Microtube.
7) Homogeneous phase mixing after the NA Carrier of 2 μ l is added.
8) Virahol of 200 μ l is added, fully after mixing, cooled on ice 10min.
9) 13000 × g, 4 DEG C of centrifugal 20min, abandon supernatant.Add 70% cold ethanol (the RNase FreedH of 500 μ l
2o prepares) rinsing, 13000 × g, 4 DEG C of centrifugal 5min are dry after abandoning supernatant.
10) the RNase Free dH of 6 μ l is added
2o dissolution precipitation, obtains Ligated RNA.
(4) reverse transcription reaction.
1) by following component preparation inverse transcription reaction liquid.
2) reverse transcription reaction condition is as follows:
30℃10min
↓
42℃1h
↓
70℃15min
3) reaction can carry out next step experiment after terminating.
(5) Outer PCR reacts
(6) Inner PCR reacts
(7) agarose gel electrophoresis
After reaction terminates, the PCR reaction solution getting 5 ~ 10 μ l carries out agarose gel electrophoresis, and as shown in Figure 1, in Fig. 1, M is DL2000 nucleic acid molecular weight standard, and l and 2 is amplified production.3 ' RACE pcr amplification product can be confirmed from Fig. 1.
(8) sequencing analysis
DNA sequencing (specific experiment operation steps is identical with abovementioned steps 6 ~ 10) will be carried out again after the object product cloning of pcr amplification to pMD-18T carrier.
14, Mercuric chloride antibacterial peptide gene sequencing and result:
Extract plasmid DNA dideoxy method and measure nucleotide sequence, use instrument is the full-automatic nucleotide sequencing instrument of Appliedbiosystems373A.The result of genetic testing, as shown in SEQ ID NO:1, utilizes bioinformatics method derivation synthetic, and the Mercuric chloride antibacterial peptide proteins encoded of antibacterial experiment checking (as embodiment 2) is as shown in SEQ ID NO:2.The sequence of Mercuric chloride antibacterial peptide gene Nucleotide shows as: sequence length is 331 bases, sequence type: nucleic acid, chain number: strand, topology: straight-chain, sequence kind: cDNA, source: Mercuric chloride skin mucus.What encode Mercuric chloride antibacterial peptide mature sequence is Mercuric chloride antibacterial peptide gene 177 ~ 213 Nucleotide, and its nucleotide sequence is as shown in SEQ ID NO:3, and this Mercuric chloride antibacterial peptide gene is as the application of preparation Mercuric chloride antibacterial peptide.
Embodiment 2 Mercuric chloride antibacterial peptide (CaSPI) anti-microbial activity detects and minimal inhibitory concentration is determined
Test strain: intestinal bacteria Escherichia coli, streptococcus aureus Staphylococcus aureus, subtilis Bacillus dysenteriae, above bacterial classification all has laboratory to preserve.R V C A S F P L P I C Y sequent synthesis pressed by antibacterial tests Mercuric chloride antibacterial peptide sample, presses 2mg/mL concentration, be mixed with solution, put-20 DEG C of refrigerators for subsequent use with 0.1M sodium hydrogen phosphate salt buffer solution (PH 6.0) after sample synthesis.
The bacterium liquid 100 μ L getting incubated overnight is spread evenly across LB solid state rheology primary surface, the sterilized filter paper of 0.5cm diameter is put at media surface cruciform, each filter paper adds respectively the Mercuric chloride antibacterial peptide sample that 20 μ L synthesize, contrast with equivalent 0.1M sodium hydrogen phosphate salt buffer solution (PH 6.0).Then, be inverted cultivation 20 hours for 37 DEG C, observe and whether have inhibition zone to be formed.What have inhibition zone to be formed shows there is anti-microbial activity, carries out the mensuration of minimal inhibitory concentration further.
When measuring minimal inhibitory concentration, by the antibacterial detection method of standard, using LB liquid nutrient medium as developing medium.Bacterial classification after picking activates in right amount, in LB liquid nutrient medium, is cultivated 20 hours for 37 DEG C.Get a certain amount of LB liquid nutrient medium, add a certain amount of sample being dissolved in 0.1M sodium hydrogen phosphate salt buffer solution (PH 6.0) through 0.22cm aperture membrane filtration again, a series of concentration gradient is diluted to according to doubling dilution, cultivate 20 hours for 37 DEG C, measure photoabsorption in 600nm wavelength place.Minimal inhibitory concentration is cannot see the minimum sample concentration of bacterial growth.Sample protein concentration adopts following formula to calculate:
Protein concentration(mg/mL)=(A215nm-A225nm)(0.144。
Antibacterial Establishing is as follows, the sample being dissolved in 0.1M sodium hydrogen phosphate salt buffer solution (PH 6.0) through 0.22cm aperture membrane filtration is added in 1.9mL substratum, 0.1mL is as the first pipe, get 1mL after mixing and add the 2nd pipe, doubling dilution successively, discard from the 8th pipe sucking-off 1mL, the 9th piping control tube, as shown in the table:
Bacterium liquid (105cfu/mL) 0.05mL corrected will be added in each pipe, and place 37 DEG C after mixing and cultivate 18h, measure photoabsorption in 600nm wavelength place.Minimal inhibitory concentration is cannot see the minimum sample concentration of bacterial growth.Sample protein concentration adopts following formula to calculate:
Protein concentration(mg/mL)=(A215nm-A225nm)(0.144。
Antibacterial detected result shows, the Mercuric chloride antibacterial peptide CaSPI of synthesis all has anti-microbial activity to test strain, and CaSPI is weaker than subtilis to colibacillary suppression, is better than streptococcus aureus.
The minimal inhibitory concentration result of Mercuric chloride antibacterial peptide CaSPI is as shown in the table:
The foregoing is only preferred embodiment of the present invention, not in order to limit the present invention, all any amendments done within the spirit and principles in the present invention, equivalent replacement and improvement etc., all should be included within protection scope of the present invention.