CN101535331A - 人类微小rna以及用于抑制人类微小rna的方法 - Google Patents
人类微小rna以及用于抑制人类微小rna的方法 Download PDFInfo
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Abstract
本发明涉及分离的DNA或RNA分子,该分离的DNA或RNA分子包含至少10个连续的碱基,该连续的碱基具有在SEQ ID NO:1-94、281-374、467-481、497-522或549中示出的微小RNA中的一种序列,只是达到30%的碱基可以为摇摆碱基以及达到10%的连续碱基可以是非互补的。本发明还涉及修饰的单链微小RNA分子、分离的单链抗微小RNA分子和分离的微小RNP分子。在另一个实施例中,本发明涉及一种用于抑制细胞内微小RNP活性的方法。
Description
技术领域
本申请要求于2005年4月29日提交的美国临时申请序列号:60/714,519的优先权,其说明书的全部内容以引用的形式结合于此。
本申请中描述的发明是利用来自美国国立卫生研究院/美国国家医学研究院的资助完成的,基金号为1 P01 GM073047-01和1 R01GM068476-01。美国政府在本发明中具有一定的权利。
背景技术
典型地,微小RNA是长度通常约19至25个核苷酸的小RNA分子。这些微小RNA是从发夹前体上切割下来的非编码RNA。人们已经在大范围的多细胞生命形式的基因组中鉴定出了多种微小RNA。
动物中的微小RNA是在不同的基因组位置上找到的。典型地,大多数微小RNA是在基因间区域编码的。其他微小RNA位于mRNA的内含子内或非编码RNA转录本内。
许多微小RNA在亲缘关系较远的生物之间的序列内是保守的并且表现出组织特异性或发育阶段特异性表达。生物之间的序列保守性表明微小RNA可能在生物过程中发挥重要的作用。
已经有报道称微小RNA分子在大量生物中以序列特异性方式通过部分杂交到靶基因mRNA的非编码3’区域后阻断翻译从而来控制基因的表达。微小RNA所靶向的基因大部分还有待于表征。
然而,越来越多的证据表明微小RNA与多种疾患和病症相关。例如,已表明果蝇微小RNA靶向到与细胞凋亡相关的基因。此外,B细胞慢性淋巴细胞性白血病也与两种微小RNA的缺失有关。
因此,阐明与在多种疾患和病症调节中发挥作用的调解基因有关的机制非常重要。因此,需要能有助于阐明在多种疾患和病症中的调节因子例如微小RNA的功能的材料和方法。
另外,由于微小RNA诱导RNA降解或抑制编码重要蛋白质的mRNA的翻译,因此也需要新的分子,该分子能抑制微小RNA诱导的切割或通过抑制靶mRNA的翻译阻遏而促进表达。
发明内容
在一个实施例中,本发明涉及一种分离的DNA或RNA分子,该分离的DNA或RNA分子包含至少10个连续的碱基,该连续的碱基具有SEQ ID NO:1-94中示出的微小RNA中的序列,只是达到30%的碱基可以为摇摆碱基,并且达到10%的连续碱基可以为非互补的。
在另一个实施例中,本发明涉及一种修饰的单链微小RNA分子,该修饰的单链微小RNA分子在分子主链上包含最少10个部分和最多50个部分,该分子主链包含多个主链单元,每个部分均包含结合于一个主链单元的碱基,其中至少10个连续的碱基具有与SEQ ID NO:1-94中示出的微小RNA分子中的连续的碱基序列相同的序列,只是达到30%的碱基对可以为摇摆碱基对,并且达到10%的连续碱基可以为插入的、缺失的、错配的或其组合;不超过50%的连续部分包含脱氧核糖核苷酸主链单元,并且至少一个部分不是未修饰的脱氧核糖核苷酸部分或未修饰的核糖核苷酸部分。
在另一个实施例中,本发明涉及一种分离的单链抗微小RNA分子,该分离的单链抗微小RNA分子在分子主链上包含最少10个部分和最多50个部分,该分子主链由多个主链单元组成,每个部分均包含结合于一个主链单元的碱基,每个碱基与互补碱基形成Watson-Crick碱基对,其中至少10个连续碱基具有与SEQ IDNO:1-94中示出的任何一个微小RNA分子中的连续碱基序列互补的序列,只是达到30%的碱基对可以为摇摆碱基对,并且达到10%的连续碱基可以为插入的、缺失的、错配的或其组合;不超过50%的连续部分包含脱氧核糖核苷酸主链单元;并且该分子能够抑制微小RNP活性。
在另一个实施例中,本发明涉及一种用于抑制细胞内微小RNP活性的方法,微小RNP包含微小RNA分子,该方法包括将根据权利要求18所述的单链抗微小RNA分子引入细胞内,其中抗微小RNA与该微小RNA分子互补。
在另一个实施例中,本发明涉及一种分离的微小RNP,该分离的微小RNP包含本文中描述的分离的DNA或RNA分子。
在另一个实施例中,本发明涉及一种分离的微小RNP,该分离的微小RNP包含本文中描述的分离的单链微小RNA分子。
在另一个实施例中,本发明涉及一种分离的DNA或RNA分子,该分离的DNA或RNA分子包含至少10个连续的碱基,该至少10个连续的碱基具有SEQ ID NO:281-374中示出的微小RNA中的序列,只是达到30%的碱基可以为摇摆碱基,并且达到10%的连续碱基可以为摇摆碱基,并且达到10%的连续碱基可以为非互补的。
在另一个实施例中,本发明涉及一种分离的DNA或RNA分子,该分离的DNA或RNA分子包含至少10个连续的碱基,该至少10个连续的碱基具有SEQ ID NO:467-481中示出的微小RNA中的序列,只是达到30%的碱基可以为摇摆碱基,并且达到10%的连续碱基可以为摇摆碱基,并且达到10%的连续碱基可以为非互补的。
在另一个实施例中,本发明涉及一种分离的DNA或RNA分子,该分离的DNA或RNA分子包含至少10个连续的碱基,该至少10个连续的碱基具有SEQ ID NO:497-522中示出的微小RNA中的序列,只是达到30%的碱基可以为摇摆碱基,并且达到10%的连续碱基可以为摇摆碱基,并且达到10%的连续碱基可以为非互补的。
在另一个实施例中,本发明涉及一种分离的DNA或RNA分子,该分离的DNA或RNA分子包含至少10个连续的碱基,该至少10个连续的碱基具有SEQ ID NO:549中示出的微小RNA中的序列,只是达到30%的碱基可以为摇摆碱基,并且达到10%的连续碱基可以为摇摆碱基,并且达到10%的连续碱基可以为非互补的。
在另一个实施例中,本发明涉及一种修饰的单链微小RNA分子,该修饰的单链微小RNA分子在分子主链上包含最少10个部分和最多50个部分,该分子主链由多个主链单元组成,每个部分均包含结合于一个主链单元的碱基,其中至少10个连续碱基具有与SEQ ID NO:281-374中示出的微小RNA分子中的连续碱基序列相同的序列,只是达到30%的碱基对可以为摇摆碱基对,并且达到10%的连续碱基可以为插入的、缺失的、错配的或其组合;不超过50%的连续部分包含脱氧核糖核苷酸主链单元,并且至少一个部分不是未修饰的脱氧核糖核苷酸部分或未修饰的核糖核苷酸部分。
在另一个实施例中,本发明涉及一种修饰的单链微小RNA分子,该修饰的单链微小RNA分子在分子主链上包含最少10个部分和最多50个部分,该分子主链包含多个主链单元,每个部分均包含结合于一个主链单元的碱基,其中至少10个连续碱基具有与SEQID NO:467-481中示出的微小RNA分子中的连续碱基序列相同的序列,只是达到30%的碱基对可以为摇摆碱基对,并且达到10%的连续碱基可以为插入的、缺失的、错配的或其组合;不超过50%的连续部分包含脱氧核糖核苷酸主链单元,并且至少一个部分不是未修饰的脱氧核糖核苷酸部分或未修饰的核糖核苷酸部分。
在另一个实施例中,本发明涉及一种修饰的单链微小RNA分子,该修饰的单链微小RNA分子在分子主链上包含最少10个部分和最多50个部分,该分子主链包含多个主链单元,每个部分均包含结合于一个主链单元的碱基,其中至少10个连续碱基具有与SEQID NO:497-522中示出的微小RNA分子中的连续碱基序列相同的序列,只是达到30%的碱基对可以为摇摆碱基对,并且达到10%的连续碱基可以为插入的、缺失的、错配的或其组合;不超过50%的连续部分包含脱氧核糖核苷酸主链单元,并且至少一个部分不是未修饰的脱氧核糖核苷酸部分或未修饰的核糖核苷酸部分。
在另一个实施例中,本发明涉及一种修饰的单链微小RNA分子,该修饰的单链微小RNA分子在分子主链上包含最少10个部分和最多50个部分,该分子主链包括多个主链单元,每个部分均包含结合于一个主链单元的碱基,其中至少10个连续碱基具有与SEQID NO:549中示出的微小RNA分子中的连续碱基序列相同的序列,只是达到30%的碱基对可以为摇摆碱基对,并且达到10%的连续碱基可以为插入的、缺失的、错配的或其组合;不超过50%的连续部分包含脱氧核糖核苷酸主链单元,并且至少一个部分不是未修饰的脱氧核糖核苷酸部分或未修饰的核糖核苷酸部分。
在另一个实施例中,本发明涉及一种分离的单链抗微小RNA分子,该分离的单链抗微小RNA分子在分子主链上包含最少10个部分和最多50个部分,该分子主链包含多个主链单元,每个部分均包含结合于一个主链单元的碱基,每个碱基与互补碱基形成Watson-Crick碱基对,其中至少10个连续碱基具有与SEQ IDNO:281-374中示出的任何一个微小RNA分子中的连续碱基序列互补的序列,只是达到30%的碱基对可以为摇摆碱基对,并且达到10%的连续碱基可以为插入的、缺失的、错配的或其组合;不超过50%的连续部分包含脱氧核糖核苷酸主链单元;并且该分子能够抑制微小RNP的活性。
在另一个实施例中,本发明涉及一种分离的单链抗微小RNA分子,该分离的单链抗微小RNA分子在分子主链上包含最少10个部分和最多50个部分,该分子主链包括多个主链单元,每个部分均包含结合于一个主链单元的碱基,每个碱基与互补碱基形成Watson-Crick碱基对,其中至少10个连续碱基具有与SEQ IDNO:467-481中示出的任何一个微小RNA分子中的连续碱基序列互补的序列,只是达到30%的碱基对可以为摇摆碱基对,并且达到10%的连续碱基可以为插入的、缺失的、错配的或其组合;不超过50%的连续部分包含脱氧核糖核苷酸主链单元;并且该分子能够抑制微小RNP的活性。
在另一个实施例中,本发明涉及一种分离的单链抗微小RNA分子,该分离的单链抗微小RNA分子在分子主链上包含最少10个部分和最多50个部分,该分子主链包括多个主链单元,每个部分均包含结合于一个主链单元的碱基,每个碱基与互补碱基形成Watson-Crick碱基对,其中至少10个连续碱基具有与SEQ IDNO:497-522中示出的任何一个微小RNA分子中的连续碱基序列互补的序列,只是达到30%的碱基对可以为摇摆碱基对,并且达到10%的连续碱基可以为插入的、缺失的、错配的或其组合;不超过50%的连续部分包含脱氧核糖核苷酸主链单元;并且该分子能够抑制微小RNP的活性。
在另一个实施例中,本发明涉及一种分离的单链抗微小RNA分子,该分离的单链抗微小RNA分子在分子主链上包含最少10个部分和最多50个部分,该分子主链包括多个主链单元,每个部分均包含结合于一个主链单元的碱基,每个碱基与互补碱基形成Watson-Crick碱基对,其中至少10个连续碱基具有与SEQ IDNO:549中示出的任何一个微小RNA分子中的连续碱基序列互补的序列,只是达到30%的碱基对可以为摇摆碱基对,并且达到10%的连续碱基可以为插入的、缺失的、错配的或其组合;不超过50%的连续部分包含脱氧核糖核苷酸主链单元;并且该分子能够抑制微小RNP的活性。
附图说明
图1示出了本说明书中讨论的修饰的核苷酸单元。B表示下列核酸碱基中的任何一个:腺苷、胞苷、鸟苷、胸腺嘧啶或尿苷。
图2:已知和预测的人类微小RNA的保守模式。该保守模式是以UCSC phastCons scores(http://genome.ucsc.edu)为基础的。本图示出了在两侧均具有另外3000个侧翼核苷酸的微小RNA的染色体区域。该染色体坐标遵循来自UCSC(http://genome.ucsc.edu/)的人类基因组的构建34组合(build 34 assembly)(hg16)。为了简便,X轴表示相对位置。已知的微小RNA根据它们的Rfam名称略去“hsa”前缀而命名。预测的微小RNA分为两类:被证实的预测-在本研究中通过实验证实了的这些预测;新预测-这些预测尚未得到证实。微小RNA的方向用箭头进行标记。A:一个微小RNA预测的实例,它扩展了一个已知的配对簇(pair cluster)。B:阐明了一个新的多成员簇。(图未按比例绘制,因此保守区域的宽度是所展示区域长度的一个函数;该区域越长,所展示的图越窄)。
具体实施方式
微小RNA分子
在一个实施例中,本发明涉及一种分离的单链微小RNA分子,该分离的单链微小RNA分子具有SEQ ID NO:1-94中的任何一个。
在另一个实施例中,本发明涉及一种分离的单链微小RNA分子,该分离的单链微小RNA分子具有SEQ ID NO:281-374中的任何一个。
在另一个实施例中,本发明涉及一种分离的单链微小RNA分子,该分离的单链微小RNA分子具有SEQ ID NO:467-481中的任何一个。
在另一个实施例中,本发明涉及一种分离的单链微小RNA分子,该分离的单链微小RNA分子具有SEQ ID NO:497-522中的任何一个。
在另一个实施例中,本发明涉及一种分离的单链微小RNA分子,该分离的单链微小RNA分子具有SEQ ID NO:549中的任何一个。
微小RNA分子在本领域中是已知的(见例如关于微小RNA分子的综述:Bartel,Cell,2004,116,281-297)。Bartel所著的文献中的微小RNA分子的定义及特征以引用的方式结合于此。这些分子来自于基因组座位,并且是由特异的微小RNA基因产生的。
成熟的微小RNA分子是从形成局部发夹结构的前体转录本中加工而来的。该发夹结构通常被称为Dicer的酶切割,从而产生一种微小RNA二聚体。参见上面Bartel的参考文献。
通常,微小RNA二聚体的两条链中的一条包装在微小RNA核糖核蛋白复合体(微小RNP)中。例如,人类的微小RNP也包含蛋白质eIF2C2/Argonaute(Ago)2、螺旋酶Gemin3和Gemin4。Argonaute蛋白质族系的其他成员例如Ago1、3和4也与微小RNA结合,并形成微小RNP。
在人类,包含Ago2的微小RNP典型地引导微小RNA切割靶RNA序列。包含其他Ago蛋白(例如Ago1、3和4)的微小RNP复合体通常阻遏靶mRNA的翻译。
在一个实施例中,本发明涉及一种分离的DNA或RNA分子,该分离的DNA或RNA分子包含至少10个连续的碱基,该连续的碱基具有表A中SEQ ID NO:1-94中示出的序列及其等同物。优选地,分离的DNA或RNA分子包括至少13个,更优选至少15个,更优选至少20个连续的碱基。
在另一个实施例中,本发明涉及一种分离的DNA或RNA分子,该分离的DNA或RNA分子包含至少10个连续的碱基,该连续的碱基具有表A2中SEQ ID NO:281-374中示出的序列及其等同物。优选地,分离的DNA或RNA分子包括至少13个,更优选地至少15个,甚至更优选地至少20个连续的碱基。
在另一个实施例中,本发明涉及一种分离的DNA或RNA分子,该分离的DNA或RNA分子包含至少10个连续的碱基,该连续的碱基具有表A4中SEQ ID NO:467-481中示出的序列及其等同物。优选地,分离的DNA或RNA分子包括至少13个,更优选地至少15个,甚至更优选地至少20个连续的碱基。
在另一个实施例中,本发明涉及一种分离的DNA或RNA分子,该分离的DNA或RNA分子包含至少10个连续的碱基,该连续的碱基具有表A6中SEQ ID NO:497-522中示出的序列及其等同物。优选地,分离的DNA或RNA分子包括至少13个,更优选地至少15个,甚至更优选地至少20个连续的碱基。
在另一个实施例中,本发明涉及一种分离的DNA或RNA分子,该分离的DNA或RNA分子包含至少10个连续的碱基,该连续的碱基具有表A8中SEQ ID NO:549中示出的序列及其等同物。优选地,分离的DNA或RNA分子包括至少13个,更优选地至少15个,甚至更优选地至少20个连续的碱基。
表A.微小RNA序列
名称 | 成熟的微小RNA(5`→3`) |
miR-20b-5p | CAAAGUGCUCAUAGUGCAGGUAG(SEQ.ID.NO:1) |
miR-18b | UAAGGUGCAUCUAGUGCAGUUAG(SEQ.ID.NO:2) |
miR-843 | CAACUAGACUGUGAGCUUCUAG(SEQ.ID.NO:3) |
miR-867 | UCGAGGAGCUCACAGUCUAGAC(SEQ.ID.NO:4) |
miR-504 | GUGCAUUGCUGUUGCAUUGC(SEQ.ID.NO:5) |
miR-720a | UGGCAGUGUAUUGUUAGCUGGU(SEQ.ID.NO:6) |
miR-720b | AGGCAGUGUAUUGUUAGCUGGC(SEQ.ID.NO:7) |
miR-92b | UAUUGCACUCGUCCCGGCCUCC(SEQ.ID.NO:8) |
miR-429 | UAAUACUGUCUGGUAAAACCGU(SEQ.ID.NO:9) |
miR-822 | GUGUGCGGAAAUGCUUCUGCUA(SEQ.ID.NO:10) |
miR-755# | AAAUCUCUGCAGGCAAAUGUGA(SEQ.ID.NO:11) |
miR-301b | CAGUGCAAUGAUAUUGUCAAAGCA(SEQ.ID.NO:12) |
miR-864 | AAAAGCUGAGUUGAGAGGG SEQ.ID.NO:13) |
miR-374b | AUAUAAUACAACCUGCUAAGUG(SEQ.ID.NO:14) |
miR-619 | UUUCCGGCUCGCGUGGGUGUGU(SEQ.ID.NO:15) |
miR-20b-3p | ACUGUAGUAUGGGCACUUCCAG(SEQ.ID.NO:16) |
miR-329 | AACACACCUGGUUAACCUCUUU(SEQ.ID.NO:17) |
miR-421 | AUCAACAGACAUUAAUUGGGCG(SEQ.ID.NO:18) |
miR-431 | UGUCUUGCAGGCCGUCAUGCAG(SEQ.ID.NO:19) |
miR-433 | AUCAUGAUGGGCUCCUCGGUGU(SEQ.ID.NO:20) |
miR-451 | AAACCGUUACCAUUACUGAGUU(SEQ.ID.NO:21) |
miR-452 | UGUUUGCAGAGGAAACUGAGAC(SEQ.ID.NO:22) |
miR-453 | AGGUUGUCCGUGGUGAGUUCGC(SEQ.ID.NO:23) |
miR-500 | UAGUGCAAUAUUGCUUAUAGGGU(SEQ.ID.NO:24) |
miR-604 | UGCGGGGCUAGGGCUAACAGCA(SEQ.ID.NO:25) |
名称 | 成熟的微小RNA(5`→3`) |
miR-610 | CAUGCCUUGAGUGUAGGACCGU(SEQ.ID.NO:26) |
miR-618 | UUAAUAUGUACUGACAAAGCGU(SEQ.ID.NO:27) |
miR-620 | AUGUUGGGAGCGGGCAGGUUGG(SEQ.ID.NO:28) |
miR-631# | UCCGAGCCUGGGUCUCCCUCUU(SEQ.ID.NO:29) |
miR-723-3p# | CGUGGGCCUGAUGUGGUGCUGG(SEQ.ID.NO:30) |
miR-723-5p# | AGUACCACGUGUCAGGGCCACA(SEQ.ID.NO:31) |
miR-730# | AAACAUUCGCGGUGCACUUCUU(SEQ.ID.NO:32) |
miR-732# | AAAGGAUUCUGCUGUCGGUCCC(SEQ.ID.NO:33) |
miR-800a | AAUCGUACAGGGUCAUCCACUU(SEQ.ID.NO:34) |
miR-800b | AAUCAUACAGGGACAUCCAGUU(SEQ.ID.NO:35) |
miR-803 | UAUGUGCCUUUGGACUACAUCG(SEQ.ID.NO:36) |
miR-805 | UUUUGCGAUGUGUUCCUAAUAU(SEQ.ID.NO:37) |
miR-814 | GCAGGAACUUGUGAGUCUCC(SEQ.ID.NO:38) |
miR-815 | AAUGGCGCCACUAGGGUUGUGC(SEQ.ID.NO:39) |
miR-816 | UUGGGGAAACGGCCGCUGAGUG(SEQ.ID.NO:40) |
miR-817 | CUGUAUGCCCUCACCGCUCAGC(SEQ.ID.NO:41) |
miR-818 | AGGGGGAAAGUUCUAUAGUCCU(SEQ.ID.NO:42) |
miR-819 | UCCAUUACACUACCCUGCCUCU(SEQ.ID.NO:43) |
miR-821 | GCGGCGGCGGCGGAGGCUGCUG(SEQ.ID.NO:44) |
miR-892 | CGGCGGCGGCGGCGGCGGCUGU(SEQ.ID.NO:45) |
miR-824 | GGAGAAAUUAUCCUUGGUGUGU(SEQ.ID.NO:46) |
miR-825-3p | UUGUGACAGAUUGAUAACUGAA(SEQ.ID.NO:47) |
miR-825-5p | UCGGGGAUCAUCAUGUCACGAG(SEQ.ID.NO:48) |
miR-826 | AUUGACACUUCUGUGAGUAGAG(SEQ.ID.NO:49) |
miR-828-5p | AUGCUGACAUAUUUACUAGAGG(SEQ.ID.NO:50) |
miR-828-3p | UCUAGUAAGAGUGGCAGUCGAA(SEQ.ID.NO:51) |
miR-829-5p | GAGCUUAUUCAUAAAAGUGCAG(SEQ.ID.NO:52) |
miR-829-3p | UAAUUUUAUGUAUAAGCUAGUC(SEQ.ID.NO:53) |
名称 | 成熟的微小RNA(5`→3`) |
miR-831 | UGGGGCGGAGCUUCCGGAGGCC(SEQ.ID.NO:54) |
miR-832 | CCAUGGAUCUCCAGGUGGGUCA(SEQ.ID.NO:55) |
miR-834 | UGAAGGUCUACUGUGUGCCAGG(SEQ.ID.NO:56) |
miR-835-5p | AGGAAGCCCUGGAGGGGCUGGA(SEQ.ID.NO:57) |
miR-835-3p | UCCGGUUCUCAGGGCUCCACCU(SEQ.ID.NO:58) |
miR-837 | ACCAGGAGGCUGAGGCCCCUCA(SEQ.ID.NO:59) |
miR-838 | UCAGGCUCAGUCCCCUCCCGAU(SEQ.ID.NO:60) |
miR-839-5p | UCCUGUACUGAGCUGCCCCGA(SEQ.ID.NO:61) |
miR-839-3p | CGGGGCAGCUCAGUACAGGAU(SEQ.ID.NO:62) |
miR-840-5p | UCGACCGGACCUCGACCGGCU(SEQ.ID.NO:63) |
miR-840-3p | CUCGGCGUGGCGUCGGUCGUGG(SEQ.ID.NO:64) |
miR-841 | UUUGAAAGGCUAUUUCUUGGUC(SEQ.ID.NO:65) |
miR-842 | CGAAAACAGCAAUUACCUUUGC(SEQ.ID.NO:66) |
miR-845 | AAAGCAUGCUCCAGUGGCGCA(SEQ.ID.NO:67) |
miR-846 | CGGCUCUGGGUCUGUGGGGAGC(SEQ.ID.NO:68) |
miR-847 | CAGAGAGGACCACUAUGGCGGG(SEQ.ID.NO:69) |
miR-848 | AUUGCCAUCCCCUAUGGACCAG(SEQ.ID.NO:70) |
miR-849 | UGUCUACUACUGGAGACACUGG(SEQ.ID.NO:71) |
miR-850 | UUAGGGCCCUGGCUCCAUCUCC(SEQ.ID.NO:72) |
miR-851 | GUGAACGGGCGCCAUCCCGAGG(SEQ.ID.NO:73) |
miR-852 | UCAGCAAACAUUUAUUGUGUGC(SEQ.ID.NO:74) |
miR-853 | UGGGAUCUCCGGGGUCUUGGUU(SEQ.ID.NO:75) |
miR-854 | CUGCCCUGGCCCGAGGGACCGA(SEQ.ID.NO:76) |
miR-855-5p | UGAGUGUGUGUGUGUGAGUGUG(SEQ.ID.NO:77) |
miR-855-3p | CACGCUCAUGCACACACCCACA(SEQ.ID.NO:78) |
miR-857 | AAGGCAGGGCCCCCGCUCCCCG(SEQ.ID.NO:79) |
miR-869 | UGGUGGGCCGCAGAACAUGUGC(SEQ.ID.NO:80) |
miR-871-5p | CGGGUCGGAGUUAGCUCAAGCGG(SEQ.ID.NO:81) |
名称 | 成熟的微小RNA(5`→3`) |
miR-871-3p | CUAUCUGUCCAUCUCUGUGCUG(SEQ.ID.NO:82) |
miR-883 | UGAAACAUACACGGGAAACCUC(SEQ.ID.NO:83) |
miR-884 | AUUCUGCAUUUUUAGCAAGUUC(SEQ.ID.NO:84) |
miR-885 | GCGACCCAUACUUGGUUUCAGA(SEQ.ID.NO:85) |
miR-886 | AACAUCACAGCAAGUCUGUGCU(SEQ.ID.NO:86) |
miR-887-5p | UAUACCUCAGUUUUAUCAGGUG(SEQ.ID.NO:87) |
miR-887-3p | CCUGGAAACACUGAGGUUGUGU(SEQ.ID.NO:88) |
miR-888 | AGACCCUGGUCUGCACUCUAUC(SEQ.ID.NO:89) |
miR-889 | AGUGGGGAACCCUUCCAUGAGG(SEQ.ID.NO:90) |
miR-890 | GUGUUGAAACAAUCUCUACUGA(SEQ.ID.NO:91) |
miR-891 | AUGGAUUUCUUUGUGAAUCACC(SEQ.ID.NO:92) |
miR-893 | AAGACGGGAGGAAAGAAGGGAA(SEQ.ID.NO:93) |
miR-894 | GUGACAUCACAUAUACGGCAGC(SEQ.ID.NO:94) |
表A1.微小RNA发夹前体序列
>hsa-mir-18b
CUUGUGUUAAGGUGCAUCUAGUGCAGUUAGUGAAGCAGCUUAGAAUCUACUGCC
CUAAAUGCCCCUUCUGGCACAGG(SEQ.ID.NO:95)
>hsa-mir-20b
GAUAAGAUUGGGUCCUAGUAGUACCAAAGUGCUCAUAGUGCAGGUAGUUUUGGC
AUGACUCUACUGUAGUAUGGGCACUUCCAGUACUCUUGGAUAACAAAUCUCUUG
UUG(SEQ.ID.NO:96)
>hsa-mir-301b
GGGGUCCCCCCUGCUGGCCGCAGGUGCUCUGACGAGGUUGCACUACUGUGCUCUG
AGAAGCAGUGCAAUGAUAUUGUCAAAGCAUCUGGGACCAGCCUUGGGGAUCUC
>hsa-mir-329-1(SEQ.ID.NO:97)
GGUACCUGAAGAGAGGUUUUCUGGGUUUCUGUUUCUUUAAUGAGGACGAAACAC
ACCUGGUUAACCUCUUUUCCAGUAUC(SEQ.ID.NO:98)
>hsa-mir-329-2
GUGGUACCUGAAGAGAGGUUUUCUGGGUUUCUGUUUCUUUAUUGAGGACGAAAC
ACACCUGGUUAACCUCUUUUCCAGUAUCAA(SEQ.ID.NO:99)
>hsa-mir-374b
ACUCGGAUGGAUAUAAUACAACCUGCUAAGUGUCCUAGCACUUAGCAGGUUGUA
UUAUCAUUGUCCGUGU(SEQ.ID.NO:100)
>hsa-mir-421
CACAUUGUAGGCCUCAUUAAAUGUUUGUUGAAUGAAAAAAUGAAUCAUCAACAG
ACAUUAAUUGGGCGCCUGCUCUGUG(SEQ.ID.NO:101)
>hsa-mir-500
CCAGAUCCUAGAACCCUAUCAAUAUUGUCUCUGCUGUGUAAAUAGUUCUGAGUA
GUGCAAUAUUGCUUAUAGGGUUUUGGUGUUUGG(SEQ.ID.NO:102)
>hsa-mir-504
GGCGGCCCCGCGGUGCAUUGCUGUUGCAUUGCACGUGUGUGAGGCGGGUGCAGU
GCCUCGGCAGUGCAGCCCGGAGCCGGC(SEQ.ID.NO:103)
>hsa-mir-604
GGGUUGGGCAAGGUGCGGGGCUAGGGCUAACAGCAGUCUUACUGAAGGUUUCCU
GGAAACCACGCACAUGCUGUUGCCAC(SEQ.ID.NO:104)
>hsa-mir-610
CUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAG
GCUUGCA(SEQ.ID.NO:105)
>hsa-mir-618
UUAUUGUGAAAUAUGUCAUUAAUAUGUACUGACAAAGCGUAUCUGUGUAAUAAA
UAUGCUUUUUGUCAGUACAUGUUAAUGGUAUAUUUCAUAACAA(SEQ.ID.NO:106)
>hsa-mir-619
GCGGCUGCUGGACCCACCCGGCCGGGAAUAGUGCUCCUGGUUGUUUCCGGCUCGC
GUGGGUGUGUCGGCGGCGGG(SEQ.ID.NO:107)
>hsa-mir-620
CGCCCCCACGUGGCCCCGCCCCCUGAGGCCGGCGCUGCCGCCAUGUUGGGAGCGG
GCAGGUUGGGAGCG(SEQ.IDNO:108)
>hsa-mir-631
GGGGCGGGAGGGGGGUCCCCGGUGCUCGGAUCUCGAGGGUGCUUAUUGUUCGGU
CCGAGCCUGGGUCUCCCUCUUCCCCCC(SEQ.ID.NO:109)
>hsa-mir-720A
UGCUCUGGAUACCUGUGUGUGAUGAGCUGGCAGUGUAUUGUUAGCUGGUUGAAU
AUGUGAAUGGCAUCGGCUAACAUGCAACUGCUGUCUUAUUGCAUAUACAAUGAA
CAUCAGAGUG(SEQ.ID.NO:110)
>hsa-mir-720b
UGAAUCAGGUAGGCAGUGUAUUGUUAGCUGGCUGCUUGGGUCAAGUCAGCAGCC
ACAACUACCCUGCCACUUGCUUCU(SEQ.ID.NO:111)
>hsa-mir-723
GCCACCUUCCGAGCCUCCAGUACCACGUGUCAGGGCCACAUGAGCUGGGCCUCGU
GGGCCUGAUGUGGUGCUGGGGCCUCAGGGGUCUG(SEQ.ID.NO:112)
>hsa-mir-730
GCGGUACUUAAUGAGAAGUUGCCCGUGUUUUUUUCGCUUUAUUUGUGACGAAAC
AUUCGCGGUGCACUUCUUUUUCAGUAUCCU(SEQ.ID.NO:113)
>hsa-mir-732
CCAACGUCAGGGAAAGGAUUCUGCUGUCGGUCCCACUCCAAAGUUCACAGAAUGG
GUGGUGGGCACAGAAUCUGGACUCU(SEQ.ID.NO:114)
>hsa-mir-429
CGGCCGAUGGGCGUCUUACCAGACAUGGUUAGACCUGGCCCUCUGUCUAAUACUG
UCUGGUAAAACCGUCCAUCCGCUG(SEQ.ID.NO:115)
>hsa-mir-754
UGCUUCUGUGUGAUAUGUUUGAUAUUGGGUUGUUUAAUUAGGAACCAACUAAAU
GUCAAACAUAUUCUUACAGCAGCA(SEQ.ID.NO:116)
>hsa-mir-755
GCAGACUGGAAAAUCUCUGCAGGCAAAUGUGAUGUCACUGAGGAAAUCACACAC
UUACCCGUAGAGAUUCUACAGUCUGA(SEQ.ID.NO:117)
>hsa-mir-800A
CUUUCUUUUCCGUGCUAACCUUUGGUACUUGGAGAGUGGUUAUCCCUGUCCUGU
UCGUUUUGCUCAUGUCGAAUCGUACAGGGUCAUCCACUUUUUCAGUAUCAAGAG
CGC(SEQ.ID.NO:118)
>hsa-mir-800b
UGAAGAGUGGUUAUCCCUGCUGUGUUCGCUUAAUUUAUGACGAAUCAUACAGGG
ACAUCCAGUUUUUCA(SEQ.ID.NO:119)
>hsa-mir-803
CCCUGGCGUGAGGGUAUGUGCCUUUGGACUACAUCGUGGAAGCCAGCACCAUGCA
GUCCAUGGGCAUAUACACUUGCCUCAAGG(SEQ.ID.NO:120)
>hsa-mir-805-2
GAUGCUAAACUAUUUUUGCGAUGUGUUCCUAAUAUGUAAUAUAAAUGUAUUGGG
GACAUUUUGCAUUCAUAGUUUUGUAUC(SEQ.ID.NO:121)
>hsa-mir-451
CUUGGGAAUGGCAAGGAAACCGUUACCAUUACUGAGUUUAGUAAUGGUAAUGGU
UCUCUUGCUAUACCCAGA(SEQ.ID.NO:122)
>hsa-mir-433
CCGGGGAGAAGUACGGUGAGCCUGUCAUUAUUCAGAGAGGCUAGAUCCUCUGUG
UUGAGAAGGAUCAUGAUGGGCUCCUCGGUGUUCUCCAGG(SEQ.ID.NO:123)
>hsa-mir-431
UCCUGCUUGUCCUGCGAGGUGUCUUGCAGGCCGUCAUGCAGGCCACACUGACGGU
AACGUUGCAGGUCGUCUUGCAGGGCUUCUCGCAAGACGACAUCCUCAUCACCAAC
GACG(SEQ.ID.NO:124)
>hsa-mir-452
GCUAAGCACUUACAACUGUUUGCAGAGGAAACUGAGACUUUGUAACUAUGUCUC
AGUCUCAUCUGCAAAGAAGUAAGUGCUUUGC(SEQ.ID.NO:125)
>hsa-mir-453
GCAGGAAUGCUGCGAGCAGUGCCACCUCAUGGUACUCGGAGGGAGGUUGUCCGU
GGUGAGUUCGCAUUAUUUAAUGAUGC(SEQ.ID.NO:126)
>hsa-mir-814
GUGCAUUUGCAGGAACUUGUGAGUCUCCUAUUGAAAAUGAACAGGAGACUGAUG
AGUUCCCGGGAACAC(SEQ.ID.NO:127)
>hsa-mir-815
CUAUGCACUGCACAACCCUAGGAGAGGGUGCCAUUCACAUAGACUAUAAUUGAA
UGGCGCCACUAGGGUUGUGCAGUGCACAA(SEQ.ID.NO:128)
>hsa-mir-816
GGGUUUGGGGAAACGGCCGCUGAGUGAGGCGUCGGCUGUGUUUCUCACCGCGGU
CUUUUCCUCCCACUC(SEQ.ID.NO:129)
>hsa-mir-817
CUUGGUGACGCUGUAUGCCCUCACCGCUCAGCCCCUGGGGCUGGCUUGGCAGACA
GUACAGCAUCCAGGGGAGUCAAGGGCAUGGGGCGAGACCAGA(SEQ.ID.NO:130)
>hsa-mir-818-1
GGUAAGGGUAGAGGGAUGAGGGGGAAAGUUCUAUAGUCCUGUAAUUAGAUCUCA
GGACUAUAGAACUUUCCCCCUCAUCCCUCUGCCCUCUACC(SEQ.ID.NO:131)
>hsa-mir-818-2
GUAGAGGGCAGAGGGAUGAGGGGGAAAGUUCUAUAGUCCUGAGAUCUAAUUACA
GGACUAUAGAACUUUCCCCCUCAUCCCUCUACCCUUACCA(SEQ.ID.NO:132)
>hsa-mir-819
GGCCCGCACUCUCUCCAUUACACUACCCUGCCUCUUCUCCAUGAGAGGCAGCGGG
GUGUAGUGGAUAGAGCACGGGUU(SEQ.ID.NO:133)
>hsa-mir-821-1
GCGGCGGCGGCGGAGGCUGCUGCUGGGGCGGCUGCUGCUGGGGCGGCUGCGGCGG
CGGCUGCUGCGGGGGCUGCUGCUGCUGUUGC(SEQ.ID.NO:134)
>hsa-mir-821-2/-3
GCGGCUGCGGCGGCGGCGGAGGCUGCGGCGGCGACCGUGGCAGAGGCGGUGGCGG
AGGCCUCCGUGGCGGAGGCGGAAGC(SEQ.ID.NO:135)
>hsa-mir-822
ACUCUAUAAAUCUAGUGGAAACAUUUCUGCACAAACUAGAUUCUGGACACCAGU
GUGCGGAAAUGCUUCUGCUACAUUUUUAGGGU(SEQ.ID.NO:136)
>hsa-mir-824
GUUUCAUACUUGAGGAGAAAUUAUCCUUGGUGUGUUCGCUUUAUUUAUGAUGAA
UCAUACAAGGACAAUUUCUUUUUGAGUAUCAAAU(SEQ.ID.NO:137)
>hsa-mir-825
UCUCAGACAUCUCGGGGAUCAUCAUGUCACGAGAUACCAGUGUGCACUUGUGACA
GAUUGAUAACUGAAAGGUCUGGGA(SEQ.ID.NO:138)
>hsa-mir-826-2
UUGUCUGUGGUACCCUACUCUGGAGAGUGACAAUCAUGUAUAACUAAAUUUGAU
UGACACUUCUGUGAGUAGAGUAACGCAUGACAC(SEQ.ID.NO:139)
>hsa-mir-826-3
UUGUCUGUGGUACCCUACUCUGGAGAGUGACAAUCAUGUAUAAUUAAAUUUGAU
UGACACUUCUGUGAGUAGAGUAACGCAUGACAC(SEQ.ID.NO:140)
>hsa-mir-828
CUUCCUCAUGCUGACAUAUUUACUAGAGGGUAAAAUUAAUAACCUUCUAGUAAG
AGUGGCAGUCGAAGGGAAG(SEQ.ID.NO:141)
>hsa-mir-829
CAGUCAGAAAUGAGCUUAUUCAUAAAAGUGCAGUAUGGUGAAGUCAAUCUGUAA
UUUUAUGUAUAAGCUAGUCUCUGAUUG(SEQ.ID.NO:142)
>hsa-mir-831-1
GCUCCGCCCCACGUCGCAUGCGCCCCGGGAACGCGUGGGGCGGAGCUUCCGGAGG
CCCCGCUCUGCUGCCGACCCUGUGGAGCGGAGGGUGAAGCCUCCGGAUGCCAGUC
CCUCAUCGCUGGCCUGGUCGCGCUGUGGCGAAGGGGGCGGAGC(SEQ.ID.NO:143)
>hsa-mir-831-2
GCUCCGCCCCACGUCGCAUGCGCCCCGGGAACGCGUGGGGCGGAGCUUCCGGAGG
CCCCGCCCUGCUGCCGACCCUGUGGAGCGGAGGGUGAAGCCUCCGGAUGCCAGUC
CCUCAUCGCUGGCCCGGUCGCGCUGUGGCGAAGGGGGCGGAGC(SEQ.ID.NO:144)
>hsa-mir-831-3/-4/-5
CGCUCCGCCCCACGUCGCAUGCGCCCCGGGAAAGCGUGGGGCGGAGCUUCCGGAG
GCCCCGCCCUGCUGCCGACCCUGUGGAGCGGAGGGUGAAGCCUCCGGAUGCCAGU
CCCUCAUCGCUGGCCCGGUCGCGCUGUGGCGAAGGGGGCGGAGC(SEQ.ID.NO:
145)
>hsa-mir-832
AUUGUUCGACACCAUGGAUCUCCAGGUGGGUCAAGUUUAGAGAUGCACCAACCU
GGAGGACUCCAUGCUGUUGAGCUGU(SEQ.ID.NO:146)
>hsa-mir-834
CAGGGCUUUGUACAUGGUAGGCUUUCAUUCAUUCGUUUGCACAUUCGGUGAAGG
UCUACUGUGUGCCAGGCCCUG(SEQ.ID.NO:147)
>hsa-mir-835
CUGGCAGGCCAGGAAGAGGAGGAAGCCCUGGAGGGGCUGGAGGUGAUGGAUGUU
UUCCUCCGGUUCUCAGGGCUCCACCUCUUUCGGGCCGUAGAGCCAG(SEQ.ID.NO:
148)
>hsa-mir-837
AGAGGAGGGUCUCCUCGAGGGGUCUCUGCCUCUACCCAGGACUCUUUCAUGACCA
GGAGGCUGAGGCCCCUCACAGGCGGCUUCUUACUCU(SEQ.ID.NO:149)
>hsa-mir-838
UCGUCAGGCUCAGUCCCCUCCCGAUAAACCCCUAAAUAGGGACUUUCCCGGGGGG
UGACCCUGGCUUUUUUGGCGA(SEQ.ID.NO:150)
>hsa-mir-839
CUGACUCCCACCCCGAGUAUCCUGUACUGAGCUGCCCCGAGCUGGGCAGCAUGAA
GGGCCUCGGGGCAGCUCAGUACAGGAUGCCCCAGGGAGGAUGGAGAUCAG
(SEQ.ID.NO:151)
>hsa-mir-839-2
CUCCAUCCUCCCUGGGGCAUCCUGUACUGAGCUGCCCCGAGGCCCUUCAUGCUGC
CCAGCUCGGGGCAGCUCAGUACAGGAUACUCGGGGUGGGAGUCAG(SEQ.ID.NO:
152)
>hsa-mir-840
UUCAUCAAGACCCAGCUGAGUCACUGUCACUGCCUACCAAUCUCGACCGGACCUC
GACCGGCUCGUCUGUGUUGCCAAUCGACUCGGCGUGGCGUCGGUCGUGGUAGAUA
GGCGGUCAUGCAUACGAAUUUUCAGCUCUUGUUCUGGUGAC(SEQ.ID.NO:153)
>hsa-mir-841
AGAAUCAUCUCUCCCAGAUAAUGGCACUCUCAAACAAGUUUCCAAAUUGUUUGA
AAGGCUAUUUCUUGGUCAGAUGACUCU(SEQ.ID.NO:154)
>hsa-mir-842
CCUAGAUAAGUUAUUAGGUGGGUGCAAAGGUAAUUGCAGUUUUUCCCAUUAUUU
UAAUUGCGAAAACAGCAAUUACCUUUGCACCAACCUGAUGGAGUCCCCCU
(SEQ.ID.NO:155)
>hsa-mir-843
GCCCUCAAGGAGCUUACAAUCUAGCUGGGGGUAAAUGACUUGCACAUGAACACA
ACUAGACUGUGAGCUUCUAGAGGGC(SEQ.ID.NO:156)
>hsa-mir-845-1
CGCGAGGCCGGGGUCGAGCGCUUCAGUAGCUCAUGGCUCUGUAGAGUGCGCAUGG
CCAAGCAAAGGAAAGCAUGCUCCAGUGGCGCA(SEQ.ID.NO:157)
>hsa-mir-845-2
AGUAACCACUUAGUGUGUAUUGACUUGUCAGAAUUUUCAGAAUUUAAAGCAUGC
UCCAGUGGCGCA(SEQ.ID.NO:158)
>hsa-mir-846
CGGGGCGCGUCGCCCCCCUCAGUCCACCAGAGCCCGGAUACCUCAGAAAUUCGGC
UCUGGGUCUGUGGGGAGCGAAAUGCAACCCA(SEQ.ID.NO:159)
>hsa-mir-847
UUACUGUGUCAUUGUUGCUGUCAUUGCUACUGAGGAGUACUGACCAGAAUCAUC
UGCAACUCUUAGUUGGCAGAGAGGACCACUAUGGCGGGUAG(SEQ.ID.NO:160)
>hsa-mir-848
UGGGCCAGAUUGCCAUCCCCUAUGGACCAGAAGCCAAGGAUCUCUCUAGUGAUGG
UCAGAGGGCCCAAAUGGCAGGGAUACCCA(SEQ.ID.NO:161)
>hsa-mir-849
GCUUCUGUCUACUACUGGAGACACUGGUAGUAUAAAACCCAGAGUCUCCAGUAA
UGGACGGGAGC(SEQ.ID.NO:162)
>hsa-mir-850
CUGGGUUAGGGCCCUGGCUCCAUCUCCUUUAGGAAAACCUUCUGUGGGGAGUGG
GGCUUCGACCCUAACCCAG(SEQ.ID.NO:163)
>hsa-mir-851
GCAGAUCCUUGGGAGCCCUGUUAGACUCUGGAUUUUACACUUGGAGUGAACGGG
CGCCAUCCCGAGGCUUUGC(SEQ.ID.NO:164)
>hsa-mir-852
AGUAGGCCUCAGUAAAUGUUUAUUAGAUGAAUAAAUGAAUGACUCAUCAGCAAA
CAUUUAUUGUGUGCCUGCU(SEQ.ID.NO:165)
>hsa-mir-853
CCUGGGCUCUGACCUGAGACCUCUGGGUUCUGAGCUGUGAUGUUGCUCUCGAGCU
GGGAUCUCCGGGGUCUUGGUUCAGGG(SEQ.ID.NO:166)
>hsa-mir-854
GGUGUUAGCCCUGCGGCCCCACGCACCAGGGUAAGAGAGACUCUCGCUUCCUGCC
CUGGCCCGAGGGACCGACUGGCUGGGCC(SEQ.ID.NO:167)
>hsa-mir-855
UGGGUGCGGGCGUGUGAGUGUGUGUGUGUGAGUGUGUGUCGCUCCGGGUCCACG
CUCAUGCACACACCCACACGCCCACACUCA(SEQ.ID.NO:168)
>hsa-mir-855
UGGGUGCGGGCGUGUGAGUGUGUGUGUGUGAGUGUGUGUCGCUCCGGGUCCACG
CUCAUGCACACACCCACACGCCCACACUCA(SEQ.ID.NO:169)
>hsa-mir-857
GGGCCCGGCCCCAGGAGCGGGGCCUGGGCAGCCCCGUGUGUUGAGGAAGGAAGGC
AGGGCCCCCGCUCCCCGGGCCU(SEQ.ID.NO:170)
>hsa-mir-864
CCUUCUCUUCUCAGUUCUUCCCCAAGUUAGGAAAAGCUGAGUUGAGAGGG
(SEQ.ID.NO:171)
>hsa-mir-151
GUCUCUCUUCAGGGCUCCCGAGACACAGAAACAGACACCUGCCCUCGAGGAGCUC
ACAGUCUAGAC(SEQ.ID.NO:172)
>hsa-mir-869
AAAGAUGGUGGGCCGCAGAACAUGUGCUGAGUUCGUGCCAUAUGUCUGCUGACC
AUCACCUUU(SEQ.ID.NO:173)
>hsa-mir-871-1
UCCUACCCGGGUCGGAGUUAGCUCAAGCGGUUACCUCCUCAUGCCGGACUUUCUA
UCUGUCCAUCUCUGUGCUGGGGUUCGAGACCCGCGGGUGCUUACUGACCCUUUUA
UGCA(SEQ.ID.NO:174)
>hsa-mir-92b
CCGGGCCCCGGGCGGGCGGGAGGGACGGGACGCGGUGCAGUGUUGUUUUUUCCCC
CGCCAAUAUUGCACUCGUCCCGGCCUCCGGCCCCCCCGGCCCCCCGG(SEQ.ID.NO:
175)
>hsa-mir-883
GAUACUCGAAGGAGAGGUUGUCCGUGUUGUCUUCUCUUUAUUUAUGAUGAAACA
UACACGGGAAACCUCUUUUUUAGUAUC(SEQ.ID.NO:176)
>hsa-mir-884
AUUUUCAUCACCUAGGGAUCUUGUUAAAAAGCAGAUUCUGAUUCAGGGACCAAG
AUUCUGCAUUUUUAGCAAGUUCUCAAGUGAUGCUAAU(SEQ.ID.NO:177)
>hsa-miR-885
GUGCUCUCCUGGCCCAUGAAAUCAAGCGUGGGUGAGACCUGGUGCAGAACGGGA
AGGCGACCCAUACUUGGUUUCAGAGGCUGUGAGAAUAAC(SEQ.ID.NO:178)
>hsa-mir-886
CCCCUGUGCCUUGGGCGGGCGGCUGUUAAGACUUGCAGUGAUGUUUAACUCCUCU
CCACGUGAACAUCACAGCAAGUCUGUGCUGCUUCCCGUCCCUACGCUGCCUGGGC
(SEQ.ID.NO:179)
>hsa-mir-887
GUUUAGUGGUACUAUACCUCAGUUUUAUCAGGUGUUCUUAAAAUCACCUGGAAA
CACUGAGGUUGUGUCUCACUGAAC(SEQ.ID.NO:180)
>hsa-mir-888
GCUGCUGUUGGGAGACCCUGGUCUGCACUCUAUCUGUAUUCUUACUGAAGGGAG
UGCAGGGCAGGGUUUCCCAUACAGAGGGC(SEQ.ID.NO:181)
>hsa-mir-889
GGAAUUGACUUAGCUGGGUAGUGGGGAACCCUUCCAUGAGGAGUAGAACACUCC
UUAUGCAAGAUUCCCUUCUACCUGGCUGGGUUGGAGUC(SEQ.IDNO:182)
>hsa-mir-890
UCAUUCCUUCAGUGUUGAAACAAUCUCUACUGAACCAGCUUCAAACAAGUUCACU
GGAGUUUGUUUCAAUAUUGCAAGAAUGA(SEQ.ID.NO:183)
>hsa-mir-891
CACAAACUGUGAAGUGCUGUGGAUUUCUUUGUGAAUCACCAUAUCUAAGCUAAU
GUGGUGGUGGU UUACAAAGUAAUUCAUAGUGCUUCACAGGUG(SEQ.ID.NO:184)
>hsa-mir-892
GCGGCUGCGGCGGCGGCGGCGGCGGCGGCGGCGGCUGUUGCUGUUGCUGCUGCUG
CUGCUGCUGCUGUUGCUGCUGCUGCUGCUGCUGCUGC(SEQ.ID.NO:185)
>hsa-mir-893
GAGGGGGAAGACGGGAGGAAAGAAGGGAGUGGUUCCAUCACGCCUCCUCACUCC
UCUCCUCCCGUCUUCUCCUCUC(SEQ.ID.NO:186)
>hsa-mir-894
CUACUGCUGUUGGUGGCAGCUUGGUGGUCGUAUGUGUGACGCCAUUUACUUGAA
CCUUUAGGAGUGACAUCACAUAUACGGCAGCUAAACUGCUACAUGGGACAACAA
UU(SEQ.ID.NO:187)
表A2.微小RNA序列
名称 | 成熟的微小RNA(5`->3`) |
hsa-miR-100516 | UACUCAAAAAGCUGUCAGUCA(SEQ.ID.NO:281) |
hsa-miR-100604 | UGCGGGGCUAGGGCUAACAGCA(SEQ.ID.NO:282) |
hsa-miR-100610-5p | CAUGCCUUGAGUGUAGGACCGU(SEQ.ID.NO:283) |
hsa-miR-100631 | UCCGAGCCUGGGUCUCCCUCUU(SEQ.ID.NO:284) |
hsa-miR-100701 | AAGGUUACUUGUUAGUUCAGG(SEQ.ID.NO:285) |
hsa-miR-100723 | CGUGGGCCUGAUGUGGUGCUGG(SEQ.ID.NO:286) |
hsa-miR-100730 | AAACAUUCGCGGUGCACUUCUU(SEQ.ID.NO:287) |
hsa-miR-100732 | AAGGAUUCUGCUGUCGGUCCC(SEQ.ID.NO:288) |
hsa-miR-100754 | UGAUAUGUUUGAUAUUGGGUU(SEQ.ID.NO:289) |
hsa-miR-100760 | GCACUGAGAUGGGAGUGGUGUA(SEQ.ID.NO:290) |
hsa-miR-100814 | GCAGGAACUUGUGAGUCUCCU(SEQ.ID.NO:291) |
名称 | 成熟的微小RNA(5`->3`) |
hsa-miR-100815 | AAUGGCGCCACUAGGGUUGUGU(SEQ.ID.NO:292) |
hsa-miR-100818 | AGGGGGAAAGUUCUAUAGUCC(SEQ.ID.NO:293) |
hsa-miR-100819 | UCCAUUACACUACCCUGCCUCU(SEQ.ID.NO:294) |
hsa-miR-100824 | GGAGAAAUUAUCCUUGGUGUGU(SEQ.ID.NO:295) |
hsa-miR-100825-3p | UGUGACAGAUUGAUAACUGAAA(SEQ.ID.NO:296) |
hsa-miR-100825-5p | UCGGGGAUCAUCAUGUCACGAGA(SEQ.ID.NO:297) |
hsa-miR-100829-3p | UAAUUUUAUGUAUAAGCUAGU(SEQ.ID.NO:298) |
hsa-miR-100835-5p | AGGAAGCCCUGGAGGGGCUGGAG(SEQ.ID.NO:299) |
hsa-miR-100842 | CGAAAACAGCAAUUACCUUUGC(SEQ.ID.NO:300) |
hsa-miR-100843-3p | CAACUAGACUGUGAGCUUCUAG(SEQ.ID.NO:301) |
hsa-miR-100843-5p | AAGGAGCUUACAAUCUAGCUGGG(SEQ.ID.NO:302) |
hsa-miR-100846 | CGGCUCUGGGUCUGUGGGGAG(SEQ.ID.NO:303) |
hsa-miR-100851 | GUGAACGGGCGCCAUCCCGAGG(SEQ.ID.NO:304) |
hsa-miR-100852 | UCAGCAAACAUUUAUUGUGUGC(SEQ.ID.NO:305) |
hsa-miR-100854 | CUGCCCUGGCCCGAGGGACCGA(SEQ.ID.NO:306) |
hsa-miR-100855-3p | CACGCUCAUGCACACACCCACA(SEQ.ID.NO:307) |
hsa-miR-100855-5p | UGAGUGUGUGUGUGUGAGUGUGU(SEQ.ID.NO:308) |
hsa-miR-100869-3p | UAUGUCUGCUGACCAUCACCUU(SEQ.ID.NO:309) |
hsa-miR-100869-5p | UGGUGGGCCGCAGAACAUGUGC(SEQ.ID.NO:310) |
hsa-miR-100871-3p | CGCGGGUGCUUACUGACCCUU(SEQ.ID.NO:311) |
hsa-miR-100871-5p | CGGGUCGGAGUUAGCUCAAGCGG(SEQ.ID.NO:312) |
hsa-miR-100885 | GCGACCCAUACUUGGUUUCAG(SEQ.ID.NO:313) |
hsa-miR-100887-3p | CCUGGAAACACUGAGGUUGUGU(SEQ.ID.NO:314) |
hsa-miR-100887-5p | UAUACCUCAGUUUUAUCAGGUG(SEQ.ID.NO:315) |
hsa-miR-100891-3p | UGGUGGUUUACAAAGUAAUUCA(SEQ.ID.NO:316) |
hsa-miR-100891-5p | UGGAUUUCUUUGUGAAUCACCA(SEQ.ID.NO:317) |
hsa-miR-101001 | ACCAGGAGGCUGAGGCCCCU(SEQ.ID.NO:318) |
hsa-miR-146b | UGAGAACUGAAUUCCAUAGGCU(SEQ.ID.NO:319) |
hsa-miR-147b | GUGUGCGGAAAUGCUUCUGCUA(SEQ.ID.NO:320) |
hsa-miR-181d | AACAUUCAUUGUUGUCGGUGGGU(SEQ.ID.NO:321) |
hsa-miR-18b | UAAGGUGCAUCUAGUGCAGUUAG(SEQ.ID.NO:322) |
hsa-miR-193b | AACUGGCCCUCAAAGUCCCGCU(SEQ.ID.NO:323) |
hsa-miR-200001 | UGCAACGAACCUGAGCCACUGA(SEQ.ID.NO:324) |
hsa-miR-200002 | AUAAUACAUGGUUAACCUCUUU(SEQ.ID.NO:325) |
hsa-miR-200003 | UACUUGGAAAGGCAUCAGUUG(SEQ.ID.NO:326) |
hsa-miR-200004 | UGCAACUUACCUGAGUCAUUGA(SEQ.ID.NO:327) |
hsa-miR-200007 | GUAGAGGAGAUGGCGCAGGG(SEQ.ID.NO:328) |
hsa-miR-200008 | UACCCAUUGCAUAUCGGAGUU(SEQ.ID.NO:329) |
hsa-miR-20b | CAAAGUGCUCAUAGUGCAGGUAG(SEQ.ID.NO:330) |
hsa-miR-20b-3p | ACUGUAGUAUGGGCACUUCCAG(SEQ.ID.NO:331) |
hsa-miR-216b | AAAUCUCUGCAGGCAAAUGUGA(SEQ.ID.NO:332) |
hsa-miR-301b | CAGUGCAAUGAUAUUGUCAAAGCA(SEQ.ID.NO:333) |
hsa-miR-329 | AACACACCUGGUUAACCUCUUU(SEQ.ID.NO:334) |
hsa-miR-33b | GUGCAUUGCUGUUGCAUUGC(SEQ.ID.NO:335) |
hsa-miR-374b | AUAUAAUACAACCUGCUAAGUG(SEQ.ID.NO:336) |
hsa-miR-375 | UUUGUUCGUUCGGCUCGCGUGA(SEQ.ID.NO:337) |
hsa-miR-376a | AUCAUAGAGGAAAAUCCACGU(SEQ.ID.NO:338) |
名称 | 成熟的微小RNA(5`->3`) |
hsa-miR-376b | AUCAUAGAGGAAAAUCCAUGUU(SEQ.ID.NO:339) |
hsa-miR-376c | AAUCGUACAGGGUCAUCCACUU(SEQ.ID.NO:340) |
hsa-miR-376c | AAUCGUACAGGGUCAUCCACUU(SEQ.ID.NO:341) |
hsa-miR-377 | AUCACACAAAGGCAACUUUUGU(SEQ.ID.NO:342) |
hsa-miR-378 | ACUGGACUUGGAGUCAGAAGG(SEQ.ID.NO:343) |
hsa-miR-379 | UGGUAGACUAUGGAACGUAGG(SEQ.ID.NO:344) |
hsa-miR-380 | UAUGUAAUAUGGUCCACAUCUU(SEQ.ID.NO:345) |
hsa-miR-410 | AAUAUAACACAGAUGGCCUGU(SEQ.ID.NO:346) |
hsa-miR-421-3p | AUCAACAGACAUUAAUUGGGCG(SEQ.ID.NO:347) |
hsa-miR-429 | UAAUACUGUCUGGUAAAACCGU(SEQ.ID.NO:348) |
hsa-miR-431 | UGUCUUGCAGGCCGUCAUGCA(SEQ.ID.NO:349) |
hsa-miR-432 | UCUUGGAGUAGGUCAUUGGGUGG(SEQ.ID.NO:350) |
hsa-miR-433 | AUCAUGAUGGGCUCCUCGGUGU(SEQ.ID.NO:351) |
hsa-miR-449a | UGGCAGUGUAUUGUUAGCUGGU(SEQ.ID.NO:352) |
hsa-miR-449b | AGGCAGUGUAUUGUUAGCUGGC(SEQ.ID.NO:353) |
hsa-miR-450a | UUUUGCGAUGUGUUCCUAAUAU(SEQ.ID.NO:354) |
hsa-miR-451 | AAACCGUUACCAUUACUGAGUU(SEQ.ID.NO:355) |
hsa-miR-452 | AACUGUUUGCAGAGGAAACUGA(SEQ.ID.NO:356) |
hsa-miR-453 | AGGUUGUCCGUGGUGAGUUCGCA(SEQ.ID.NO:357) |
hsa-miR-454 | UAGUGCAAUAUUGCUUAUAGGGU(SEQ.ID.NO:358) |
hsa-miR-455-5p | UAUGUGCCUUUGGACUACAUCG(SEQ.ID.NO:359) |
hsa-miR-484 | UCAGGCUCAGUCCCCUCCCGAU(SEQ.ID.NO:360) |
hsa-miR-485-3p | GUCAUACACGGCUCUCCUCUCU(SEQ.ID.NO:361) |
hsa-miR-485-5p | AGAGGCUGGCCGUGAUGAAUUC(SEQ.ID.NO:362) |
hsa-mir-486_os | CGGGGCAGCUCAGUACAGGAU(SEQ.ID.NO:3603) |
hsa-miR-487 | AAUCAUACAGGGACAUCCAGUU(SEQ.ID.NO:364) |
hsa-miR-488 | UUGAAAGGCUAUUUCUUGGUCU(SEQ.ID.NO:365) |
hsa-miR-490 | CCAUGGAUCUCCAGGUGGGU(SEQ.ID.NO:366) |
hsa-miR-493 | UGAAGGUCUACUGUGUGCCAGG(SEQ.ID.NO:367) |
hsa-miR-497 | CAGCAGCACACUGUGGUUUGU(SEQ.ID.NO:368) |
hsa-miR-502 | AAUGCACCUGGGCAAGGAUUCA(SEQ.ID.NO:369) |
hsa-miR-503 | UAGCAGCGGGAACAGUUCUGCAG(SEQ.ID.NO:370) |
hsa-miR-505 | CGUCAACACUUGCUGGUUUCCU(SEQ.ID.NO:371) |
hsa-miR-509-3p | UGAUUGGUACGUCUGUGGGUAG(SEQ.ID.NO:372) |
hsa-miR-514 | AUUGACACUUCUGUGAGUAGA(SEQ.ID.NO:373) |
hsa-miR-92b | UAUUGCACUCGUCCCGGCCUCC(SEQ.ID.NO:374) |
表A3.微小RNA发夹前体序列
名称 | 发夹前体(5`→3`) |
hsa-mir-100516 | GGCAGUGCUCUACUCAAAAAGCUGUCAGUCACUUAGAUUACAUGUGACUGACACCUCUUUGGGUGAAGGAAGGCUCA(SEQ.ID.NO:375) |
hsa-mir-100604 | UUGGGCAAGGUGCGGGGCUAGGGCUAACAGCAGUCUUACUGAAGGUUUCCUGGAAACCACGCACAUGCUGUUGCCACUAACCUCAACCUUACUCGGUC(SEQ.ID.NO:376) |
hsa-mir-100610 | UUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAAAAAAGCGAG(SEQ.ID.NO:377) |
hsa-mir-100631 | AGGGGCGGGAGGGGGGUCCCCGGUGCUCGGAUCUCGAGGGUGCUUAUUGUUCGGUCCGAGCCUGGGUCUCCCUCUUCCCCCCAACC(SEQ.ID.NO:378) |
hsa-mir-100701 | AACUUGUUAGAAGGUUACUUGUUAGUUCAGGACCUCAUUACUUUCUGCCUGAACUAUUGCAGUAGCCUCCUAACUGGUUAU(SEQ.ID.NO:379) |
hsa-mir-100723 | CCGAGCCUCCAGUACCACGUGUCAGGGCCACAUGAGCUGGGCCUCGUGGGCCUGAUGUGGUGCUGGGGCCUCAGGG(SEQ.ID.NO:380) |
hsa-mir-100730 | UACUUAAUGAGAAGUUGCCCGUGUUUUUUUCGCUUUAUUUGUGACGAAACAUUCGCGGUGCACUUCUUUUUCAGUAUC(SEQ.ID.NO:381) |
hsa-mir-100732 | ACGUCAGGGAAAGGAUUCUGCUGUCGGUCCCACUCCAAAGUUCACAGAAUGGGUGGUGGGCACAGAAUCUGGACUCUGCUUGUG(SEQ.ID.NO:382) |
hsa-mir-100754 | UGCUUCUGUGUGAUAUGUUUGAUAUUGGGUUGUUUAAUUAGGAACCAACUAAAUGUCAAACAUAUUCUUACAGCAGCAG(SEQ.ID.NO:383) |
hsa-mir-100760 | CCUGAGCCUUGCACUGAGAUGGGAGUGGUGUAAGGCUCAGGUAUGCACAGCUCCCAUCUCAGAACAAGGCUCGGGUG(SEQ.ID.NO:384) |
hsa-mir-100814 | GUGUGCAUUUGCAGGAACUUGUGAGUCUCCUAUUGAAAAUGAACAGGAGACUGAUGAGUUCCCGGGAACACCCACAA(SEQ.ID.NO:385) |
hsa-mir-100815 | AUGCACUGCACAACCCUAGGAGAGGGUGCCAUUCACAUAGACUAUAAUUGAAUGGCGCCACUAGGGUUGUGCAGUGCACAA(SEQ.ID.NO:386) |
hsa-mir-100818 | UAGAGGGAUGAGGGGGAAAGUUCUAUAGUCCUGUAAUUAGAUCUCAGGACUAUAGAACUUUCCCCCUCAUCCCUCUGCC(SEQ.ID.NO:387) |
hsa-mir-100819 | CCGCACUCUCUCCAUUACACUACCCUGCCUCUUCUCCAUGAGAGGCAGCGGGGUGUAGUGGAUAGAGCACGGGU(SEQ.ID.NO:388) |
hsa-mir-100824 | UCAUACUUGAGGAGAAAUUAUCCUUGGUGUGUUCGCUUUAUUUAUGAUGAAUCAUACAAGGACAAUUUCUUUUUGAGUAUCAAA(SEQ.ID.NO:389) |
hsa-mir-100825 | CUCAGACAUCUCGGGGAUCAUCAUGUCACGAGAUACCAGUGUGCACUUGUGACAGAUUGAUAACUGAAAGGUCUGGGAG(SEQ.ID.NO:390) |
hsa-mir-100829 | AGUCAGAAAUGAGCUUAUUCAUAAAAGUGCAGUAUGGUGAAGUCAAUCUGUAAUUUUAUGUAUAAGCUAGUCUCUGAUUGA(SEQ.ID.NO:391) |
hsa-mir-100835 | CAGGAAGAGGAGGAAGCCCUGGAGGGGCUGGAGGUGAUGGAUGUUUUCCUCCGGUUCUCAGGGCUCCACCUCUUUCGGGCC(SEQ.ID.NO:392) |
hsa-mir-100842 | AGGUGGGUGCAAAGGUAAUUGCAGUUUUUCCCAUUAUUUUAAUUGCGAAAACAGCAAUUACCUUUGCACCAACCUGA(SEQ.ID.NO:393) |
hsa-mir-100843 | AACUGCCCUCAAGGAGCUUACAAUCUAGCUGGGGGUAAAUGACUUGCACAUGAACACAACUAGACUGUGAGCUUCUAGAGGGCAGGGA(SEQ.ID.NO:394) |
hsa-mir-100846 | GGCGCGUCGCCCCCCUCAGUCCACCAGAGCCCGGAUACCUCAGAAAUUCGGCUCUGGGUCUGUGGGGAGCGAAAUGCAAC(SEQ.ID.NO:395) |
hsa-mir-100851 | GUGCAGAUCCUUGGGAGCCCUGUUAGACUCUGGAUUUUACACUUGGAGUGAACGGGCGCCAUCCCGAGGCUUUGCACAG(SEQ.ID.NO:396) |
名称 | 发夹前体(5`→3`) |
hsa-mir-100852 | CAUUAGUAGGCCUCAGUAAAUGUUUAUUAGAUGAAUAAAUGAAUGACUCAUCAGCAAACAUUUAUUGUGUGCCUGCUAAAGU(SEQ.ID.NO:397) |
hsa-mir-100854 | UUAGCCCUGCGGCCCCACGCACCAGGGUAAGAGAGACUCUCGCUUCCUGCCCUGGCCCGAGGGACCGACUGGCUGGGC(SEQ.ID.NO:398) |
hsa-mir-100855 | UGCGGGCGUGUGAGUGUGUGUGUGUGAGUGUGUGUCGCUCCGGGUCCACGCUCAUGCACACACCCACACGCCCACACU(SEQ.ID.NO:399) |
hsa-mir-100869 | UAAGUGGAAAGAUGGUGGGCCGCAGAACAUGUGCUGAGUUCGUGCCAUAUGUCUGCUGACCAUCACCUUUAGAAGCCCC(SEQ.ID.NO:400) |
hsa-mir-100871 | CACUCCUACCCGGGUCGGAGUUAGCUCAAGCGGUUACCUCCUCAUGCCGGACUUUCUAUCUGUCCAUCUCUGUGCUGGGGUUCGAGACCCGCGGGUGCUUACUGACCCUUUUAUGCAAUAA(SEQ.ID.NO:401) |
hsa-mir-100885 | CCUGGCCCAUGAAAUCAAGCGUGGGUGAGACCUGGUGCAGAACGGGAAGGCGACCCAUACUUGGUUUCAGAGGCUGUGAG(SEQ.ID.NO:402) |
hsa-mir-100887 | UUAGUGGUACUAUACCUCAGUUUUAUCAGGUGUUCUUAAAAUCACCUGGAAACACUGAGGUUGUGUCUCACUGAAC(SEQ.ID.NO:403) |
hsa-mir-100891 | UGAAGUGCUGUGGAUUUCUUUGUGAAUCACCAUAUCUAAGCUAAUGUGGUGGUGGUUUACAAAGUAAUUCAUAGUGCUUCA(SEQ.ID.NO:404) |
hsa-mir-101001 | UCUCCUCGAGGGGUCUCUGCCUCUACCCAGGACUCUUUCAUGACCAGGAGGCUGAGGCCCCUCACAGGCGGC(SEQ.ID.NO:405) |
hsa-mir-146b | CACCUGGCACUGAGAACUGAAUUCCAUAGGCUGUGAGCUCUAGCAAUGCCCUGUGGACUCAGUUCUGGUGCCCGGCAGU(SEQ.ID.NO:406) |
hsa-mir-147b | UAUAAAUCUAGUGGAAACAUUUCUGCACAAACUAGAUUCUGGACACCAGUGUGCGGAAAUGCUUCUGCUACAUUUUUAGG(SEQ.ID.NO:407) |
hsa-mir-181d | GGUCACAAUCAACAUUCAUUGUUGUCGGUGGGUUGUGAGGACUGAGGCCAGACCCACCGGGGGAUGAAUGUCACUGUGGCUGGG(SEQ.ID.NO:408) |
hsa-mir-18b | UCUCUUGUGUUAAGGUGCAUCUAGUGCAGUUAGUGAAGCAGCUUAGAAUCUACUGCCCUAAAUGCCCCUUCUGGCACAGGCUGCC(SEQ.ID.NO:409) |
hsa-mir-193b | GUCUCAGAAUCGGGGUUUUGAGGGCGAGAUGAGUUUAUGUUUUAUCCAACUGGCCCUCAAAGUCCCGCUUUUGGGGUCA(SEQ.ID.NO:410) |
hsa-mir-200001 | CCUUAAUCCUUGCAACGAACCUGAGCCACUGAUUCAGUAAAAUACUCAGUGGCACAUGUUUGUUGUGAGGGUCAAAAGA(SEQ.ID.NO:411) |
hsa-mir-200002 | AUAUUUGAGGAGAGGUUAUCCGUGUUAUGUUCGCUUCAUUCAUCAUGAAUAAUACAUGGUUAACCUCUUUUUGAAUAUCA(SEQ.ID.NO:412) |
hsa-mir-200003 | GGAAGUGCCCUACUUGGAAAGGCAUCAGUUGCUUAGAUUACAUGUAACUAUUCCCUUUCUGAGUAGAGUAAGUCUUA(SEQ.ID.NO:413) |
hsa-mir-200004 | CCUUAAUCCUUGCAACUUACCUGAGUCAUUGAUUCAGUAAAACAUUCAAUGGCACAUGUUUGUUGUUAGGGUCAAAAGA(SEQ.ID.NO:414) |
hsa-mir-200007 | GCUAGAGAAGGUAGAGGAGAUGGCGCAGGGGACACGGGCAAAGACUUGGGGGUUCCUGGGACCCUCAGACGUGUGUCCUCUUCUCCCUCCUCCCAGGUGUAUG(SEQ.ID.NO:415) |
hsa-mir-200008 | CCUUCUCCCAUACCCAUUGCAUAUCGGAGUUGUGAAUUCUCAAAACACCUCCUGUGUGCAUGGAUUACAGGAGGGUGA(SEQ.ID.NO:416) |
hsa-mir-20b | CUAGUAGUACCAAAGUGCUCAUAGUGCAGGUAGUUUUGGCAUGACUCUACUGUAGUAUGGGCACUUCCAGUACUCUUGGA(SEQ.ID.NO:417) |
hsa-mir-216b | GCAGACUGGAAAAUCUCUGCAGGCAAAUGUGAUGUCACUGAGGAAAUCACACACUUACCCGUAGAGAUUCUACAGUCUGACA(SEQ.ID.NO:418) |
hsa-mir-301b | GCCGCAGGUGCUCUGACGAGGUUGCACUACUGUGCUCUGAGAAGCAGUGCAAUGAUAUUGUCAAAGCAUCUGGGACCA(SEQ.ID.NO:419) |
名称 | 发夹前体(5`→3`) |
hsa-mir-329-1 | GUACCUGAAGAGAGGUUUUCUGGGUUUCUGUUUCUUUAAUGAGGACGAAACACACCUGGUUAACCUCUUUUCCAGUAUCA(SEQ.ID.NO:420) |
hsa-mir-329-2 | GUACCUGAAGAGAGGUUUUCUGGGUUUCUGUUUCUUUAUUGAGGACGAAACACACCUGGUUAACCUCUUUUCCAGUAUCA(SEQ.ID.NO:421) |
hsa-mir-33b | CGGCCCCGCGGUGCAUUGCUGUUGCAUUGCACGUGUGUGAGGCGGGUGCAGUGCCUCGGCAGUGCAGCCCGGAGCCGGCC(SEQ.ID.NO:422) |
hsa-mir-374b | ACUCGGAUGGAUAUAAUACAACCUGCUAAGUGUCCUAGCACUUAGCAGGUUGUAUUAUCAUUGUCCGUGUCU(SEQ.ID.NO:423) |
hsa-mir-375 | CUCCCGCCCCGCGACGAGCCCCUCGCACAAACCGGACCUGAGCGUUUUGUUCGUUCGGCUCGCGUGAGGCAGGGGCG(SEQ.ID.NO:424) |
hsa-mir-376a-1 | UAUUUAAAAGGUAGAUUCUCCUUCUAUGAGUACAUUAUUUAUGAUUAAUCAUAGAGGAAAAUCCACGUUUUCAGUAUC(SEQ.ID.NO:425) |
hsa-mir-376a-2 | UAUUUAAAAGGUAGAUUUUCCUUCUAUGGUUACGUGUUUGAUGGUUAAUCAUAGAGGAAAAUCCACGUUUUCAGUAUC(SEQ.ID.NO:426) |
hsa-mir-376b | GUAUUUAAAACGUGGAUAUUCCUUCUAUGUUUACGUGAUUCCUGGUUAAUCAUAGAGGAAAAUCCAUGUUUUCAGUAUCA(SEQ.ID.NO:427) |
hsa-mir-376c | UAUUUAAAAGGUGGAUAUUCCUUCUAUGUUUAUGUUAUUUAUGGUUAAACAUAGAGGAAAUUCCACGUUUUCAGUAUC(SEQ.ID.NO:428) |
hsa-mir-376c | UAUUUAAAAGGUGGAUAUUCCUUCUAUGUUUAUGUUAUUUAUGGUUAAACAUAGAGGAAAUUCCACGUUUUCAGUAUC(SEQ.ID.NO:429) |
hsa-mir-377 | ACCCUUGAGCAGAGGUUGCCCUUGGUGAAUUCGCUUUAUUUAUGUUGAAUCACACAAAGGCAACUUUUGUUUGAGUAUCA(SEQ.ID.NO:430) |
hsa-mir-378 | CACCCAGGGCUCCUGACUCCAGGUCCUGUGUGUUACCUAGAAAUAGCACUGGACUUGGAGUCAGAAGGCCUGAGUGGA(SEQ.ID.NO:431) |
hsa-mir-379 | CCUGAAGAGAUGGUAGACUAUGGAACGUAGGCGUUAUGAUUUCUGACCUAUGUAACAUGGUCCACUAACUCUCAGUAUC(SEQ.ID.NO:432) |
hsa-mir-380 | ACCUGAAAAGAUGGUUGACCAUAGAACAUGCGCUAUCUCUGUGUCGUAUGUAAUAUGGUCCACAUCUUCUCAAUAUCA(SEQ.ID.NO:433) |
hsa-mir-410 | ACCUGAGAAGAGGUUGUCUGUGAUGAGUUCGCUUUUAUUAAUGACGAAUAUAACACAGAUGGCCUGUUUUCAGUACC(SEQ.ID.NO:434) |
hsa-mir-421 | CAUUGUAGGCCUCAUUAAAUGUUUGUUGAAUGAAAAAAUGAAUCAUCAACAGACAUUAAUUGGGCGCCUGCUCUGU(SEQ.ID.NO:435) |
hsa-mir-429 | GCCGAUGGGCGUCUUACCAGACAUGGUUAGACCUGGCCCUCUGUCUAAUACUGUCUGGUAAAACCGUCCAUCCGCUG(SEQ.ID.NO:436) |
hsa-mir-431 | UCCUGCGAGGUGUCUUGCAGGCCGUCAUGCAGGCCACACUGACGGUAACGUUGCAGGUCGUCUUGCAGGGCUUCUCGCAAGACG(SEQ.ID.NO:437) |
hsa-mir-432 | CUCCUCCAGGUCUUGGAGUAGGUCAUUGGGUGGAUCCUCUAUUUCCUUACGUGGGCCACUGGAUGGCUCCUCCAUGUCUUGGAGUAGAU(SEQ.ID.NO:438) |
hsa-mir-433 | CGGGGAGAAGUACGGUGAGCCUGUCAUUAUUCAGAGAGGCUAGAUCCUCUGUGUUGAGAAGGAUCAUGAUGGGCUCCUCGGUGUUCUCCAGGUA(SEQ.ID.NO:439) |
hsa-mir-449a | UGUGAUGAGCUGGCAGUGUAUUGUUAGCUGGUUGAAUAUGUGAAUGGCAUCGGCUAACAUGCAACUGCUGUCUUAUUGCAUA(SEQ.ID.NO:440) |
hsa-mir-449b | UGAAUCAGGUAGGCAGUGUAUUGUUAGCUGGCUGCUUGGGUCAAGUCAGCAGCCACAACUACCCUGCCACUUGCUUCUGGA(SEQ.ID.NO:441) |
hsa-mir-450a-1 | ACUAAACUGUUUUUGCGAUGUGUUCCUAAUAUGCACUAUAAAUAUAUUGGGAACAUUUUGCAUGUAUAGUUUUGUAU(SEQ.ID.NO:442) |
名称 | 发夹前体(5`→3`) |
hsa-mir-450a-2 | GCUAAACUAUUUUUGCGAUGUGUUCCUAAUAUGUAAUAUAAAUGUAUUGGGGACAUUUUGCAUUCAUAGUUUUGUAU(SEQ.ID.NO:443) |
hsa-mir-451 | AAUGGCAAGGAAACCGUUACCAUUACUGAGUUUAGUAAUGGUAAUGGUUCUCUUGCUAUACC(SEQ.ID.NO:444) |
hsa-mir-452 | AAGCACUUACAACUGUUUGCAGAGGAAACUGAGACUUUGUAACUAUGUCUCAGUCUCAUCUGCAAAGAAGUAAGUGCUUUGCC(SEQ.ID.NO:445) |
hsa-mir-453 | AGAAGAUGCAGGAAUGCUGCGAGCAGUGCCACCUCAUGGUACUCGGAGGGAGGUUGUCCGUGGUGAGUUCGCAUUAUUUAA(SEQ.ID.NO:446) |
hsa-mir-454 | AUCCUAGAACCCUAUCAAUAUUGUCUCUGCUGUGUAAAUAGUUCUGAGUAGUGCAAUAUUGCUUAUAGGGUUUUGGUGUUU(SEQ.ID.NO:447) |
hsa-mir-455 | GGCGUGAGGGUAUGUGCCUUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUGCCUCAAG(SEQ.ID.NO:448) |
hsa-mir-484 | CUGGGAACCCCGGGGGGGGCGGGGCCUCGCGGCCCUGCAGCCUCGUCAGGCUCAGUCCCCUCCCGAUAAACCCCUAA(SEQ.ID.NO:449) |
hsa-mir-485 | GUACUUGGAGAGAGGCUGGCCGUGAUGAAUUCGAUUCAUCAAAGCGAGUCAUACACGGCUCUCCUCUCUUUUAGUGUCA(SEQ.ID.NO:450) |
hsa-mir-486_os | CCCUGGGGCAUCCUGUACUGAGCUGCCCCGAGGCCCUUCAUGCUGCCCAGCUCGGGGCAGCUCAGUACAGGAUACUCGGGGUGG(SEQ.ID.NO:451) |
hsa-mir-487 | UACUUGAAGAGUGGUUAUCCCUGCUGUGUUCGCUUAAUUUAUGACGAAUCAUACAGGGACAUCCAGUUUUUCAGUAUC(SEQ.ID.NO:452) |
hsa-mir-488 | AAUCAUCUCUCCCAGAUAAUGGCACUCUCAAACAAGUUUCCAAAUUGUUUGAAAGGCUAUUUCUUGGUCAGAUGACUCU(SEQ.ID.NO:453) |
hsa-mir-490 | UUGUUCGACACCAUGGAUCUCCAGGUGGGUCAAGUUUAGAGAUGCACCAACCUGGAGGACUCCAUGCUGUUGAGCUGUU(SEQ.ID.NO:454) |
h5a-mir-493 | CUCCAGGGCUUUGUACAUGGUAGGCUUUCAUUCAUUCGUUUGCACAUUCGGUGAAGGUCUACUGUGUGCCAGGCCCUGUGCCA(SEQ.ID.NO:455) |
hsa-mir-497 | GCUCCCGCCCCAGCAGCACACUGUGGUUUGUACGGCACUGUGGCCACGUCCAAACCACACUGUGGUGUUAGAGCGAGGGUGGGGGAG(SEQ.ID.NO:456) |
hsa-mir-502 | CCCCUCUCUAAUCCUUGCUAUCUGGGUGCUAGUGCUGGCUCAAUGCAAUGCACCUGGGCAAGGAUUCAGAGAGGGGGA(SEQ.ID.NO:457) |
hsa-mir-503 | AGCCGUGCCCUAGCAGCGGGAACAGUUCUGCAGUGAGCGAUCGGUGCUCUGGGGUAUUGUUUCCGCUGCCAGGGUAAGUCUGG(SEQ.ID.NO:458) |
hsa-mir-505 | ACCCAGUGGGGGAGCCAGGAAGUAUUGAUGUUUCUGCCAGUUUAGCGUCAACACUUGCUGGUUUCCUCUCUGGAGCA(SEQ.ID.NO:459) |
hsa-mir-509-1 | GUGGUACCCUACUGCAGACAGUGGCAAUCAUGUAUAAUUAAAAAUGAUUGGUACGUCUGUGGGUAGAGUACUGCAU(SEQ.ID.NO:460) |
hsa-mir-509-2 | GUGGUACCCUACUGCAGACGUGGCAAUCAUGUAUAAUUAAAAAUGAUUGGUACGUCUGUGGGUAGAGUACUGCAU(SEQ.ID.NO:461) |
hsa-mir-509-3 | GUGGUACCCUACUGCAGACAGUGGCAAUCAUGUAUAAUUAAAAAUGAUUGGUACGUCUGUGGGUAGAGUACUGCAU(SEQ.ID.NO:462) |
hsa-mir-514-1 | CUGUGGUACCCUACUCUGGAGAGUGACAAUCAUGUAUAAUUAAAUUUGAUUGACACUUCUGUGAGUAGAGUAACGCAUGA(SEQ.ID.NO:463) |
hsa-mir-514-2 | CUGUGGUACCCUACUCUGGAGAGUGACAAUCAUGUAUAACUAAAUUUGAUUGACACUUCUGUGAGUAGAGUAACGCAUGA(SEQ.ID.NO:464) |
hsa-mir-514-3 | CUGUGGUACCCUACUCUGGAGAGUGACAAUCAUGUAUAACUAAAUUUGAUUGACACUUCUGUGAGUAGAGUAACGCAUGA(SEQ.ID.NO:465) |
hsa-mir-92b | GGCGGGCGGGAGGGACGGGACGCGGUGCAGUGUUGUUUUUUCCCCCGCCAAUAUUGCACUCGUCCCGGCCUCCGGCCCCCCCG(SEQ.ID.NO:466) |
表A4.微小RNA序列
名称 | 成熟的微小RNA(5′至3′) |
hsa-miR-100516 | UACUCAAAAAGCUGUCAGUCA(SEQ.ID.NO:467) |
hsa-miR-100701 | AAGGUUACUUGUUAGUUCAGG(SEQ.ID.NO:468) |
hsa-miR-100760 | GCACUGAGAUGGGAGUGGUGUA(SEQ.ID.NO:469) |
hsa-miR-100885 | GCGACCCAUACUUGGUUUCAG(SEQ.ID.NO:470) |
hsa-miR-100887-3p | CCUGGAAACACUGAGGUUGUGU(SEQ.ID.NO:471) |
hsa-miR-100887-5p | UAUACCUCAGUUUUAUCAGGUG(SEQ.ID.NO:472) |
hsa-miR-100891-3p | UGGUGGUUUACAAAGUAAUUCA(SEQ.ID.NO:473) |
hsa-miR-100891-5p | UGGAUUUCUUUGUGAAUCACCA(SEQ.ID.NO:474) |
hsa-miR-200001 | UGCAACGAACCUGAGCCACUGA(SEQ.ID.NO:475) |
hsa-miR-200002 | AUAAUACAUGGUUAACCUCUUU(SEQ.ID.NO:476) |
hsa-miR-200003 | UACUUGGAAAGGCAUCAGUUG(SEQ.ID.NO:477) |
hsa-miR-200004 | UGCAACUUACCUGAGUCAUUGA(SEQ.ID.NO:478) |
hsa-miR-200007 | GUAGAGGAGAUGGCGCAGGG(SEQ.ID.NO:479) |
hsa-miR-200008 | UACCCAUUGCAUAUCGGAGUU(SEQ.ID.NO:480) |
hsa-mir-486_os | CGGGGCAGCUCAGUACAGGAU(SEQ.ID.NO:481) |
表A5.微小RNA发夹前体序列
名称 | 发夹前体(5`→3`) |
hsa-miR-100516 | GGCAGUGCUCUACUCAAAAAGCUGUCAGUCACUUAGAUUACAUGUGACUGACACCUCUUUGGGUGAAGGAAGGCUCA(SEQ.ID.NO:482) |
hsa-miR-100701 | AACUUGUUAGAAGGUUACUUGUUAGUUCAGGACCUCAUUACUUUCUGCCUGAACUAUUGCAGUAGCCUCCUAACUGGUUAU(SEQ.ID.NO:483) |
hsa-miR-100760 | CCUGAGCCUUGCACUGAGAUGGGAGUGGUGUAAGGCUCAGGUAUGCACAGCUCCCAUCUCAGAACAAGGCUCGGGUG(SEQ.ID.NO:484) |
hsa-miR-100885 | CCUGGCCCAUGAAAUCAAGCGUGGGUGAGACCUGGUGCAGAACGGGAAGGCGACCCAUACUUGGUUUCAGAGGCUGUGAG(SEQ.ID.NO:485) |
hsa-miR-100887-3p | UUAGUGGUACUAUACCUCAGUUUUAUCAGGUGUUCUUAAAAUCACCUGGAAACACUGAGGUUGUGUCUCACUGAAC(SEQ.ID.NO:486) |
hsa-miR-100887-5p | UUAGUGGUACUAUACCUCAGUUUUAUCAGGUGUUCUUAAAAUCACCUGGAAACACUGAGGUUGUGUCUCACUGAAC(SEQ.ID.NO:487) |
hsa-miR-100891-3p | UGAAGUGCUGUGGAUUUCUUUGUGAAUCACCAUAUCUAAGCUAAUGUGGUGGUGGUUUACAAAGUAAUUCAUAGUGCUUCA(SEQ.ID.NO:488) |
hsa-miR-100891-5p | UGAAGUGCUGUGGAUUUCUUUGUGAAUCACCAUAUCUAAGCUAAUGUGGUGGUGGUUUACAAAGUAAUUCAUAGUGCUUCA(SEQ.ID.NO:489) |
hsa-miR-200001 | CCUUAAUCCUUGCAACGAACCUGAGCCACUGAUUCAGUAAAAUACUCAGUGGCACAUGUUUGUUGUGAGGGUCAAAAGA(SEQ.ID.NO:490) |
hsa-miR-200002 | AUAUUUGAGGAGAGGUUAUCCGUGUUAUGUUCGCUUCAUUCAUCAUGAAUAAUACAUGGUUAACCUCUUUUUGAAUAUCA(SEQ.ID.NO:491) |
hsa-miR-200003 | GGAAGUGCCCUACUUGGAAAGGCAUCAGUUGCUUAGAUUACAUGUAACUAUUCCCUUUCUGAGUAGAGUAAGUCUUA(SEQ.ID.NO:492) |
hsa-miR-200004 | CCUUAAUCCUUGCAACUUACCUGAGUCAUUGAUUCAGUAAAACAUUCAAUGGCACAUGUUUGUUGUUAGGGUCAAAAGA(SEQ.ID.NO:493) |
hsa-miR-200007 | GCUAGAGAAGGUAGAGGAGAUGGCGCAGGGGACACGGGCAAAGACUUGGGGGUUCCUGGGACCCUCAGACGUGUGUCCUCUUCUCCCUCCUCCCAGGUGUAUG(SEQ.ID.NO:494) |
hsa-miR-200008 | CCUUCUCCCAUACCCAUUGCAUAUCGGAGUUGUGAAUUCUCAAAACACCUCCUGUGUGCAUGGAUUACAGGAGGGUGA(SEQ.ID.NO:495) |
hsa-mir-486os | CCCUGGGGCAUCCUGUACUGAGCUGCCCCGAGGCCCUUCAUGCUGCCCAGCUCGGGGCAGCUCAGUACAGGAUACUCGGGGUGG(SEQ.ID.NO:496) |
表A6.微小RNA序列
名称 | 微小RNA(5′→3′) |
hsa-mir-18b-3p | CUGCCCUAAAUGCCCCUUCUGGC(SEQ.ID.NO:497) |
hsa-miR-618 | UUAAUAUGUACUGACAAAGCGU(SEQ.ID.NO:498) |
hsa-miR-619 | UUUCCGGCUCGCGUGGGUGUGU(SEQ.ID.NO:499) |
hsa-miR-620 | AUGUUGGGAGCGGGCAGGUUGG(SEQ.ID.NO:500) |
hsa-miR-723-5p | AGUACCACGUGUCAGGGCCACAUGA(SEQ.ID.NO:501) |
hsa-mir-816 | UUGGGGAAACGGCCGCUGAGUGA(SEQ.ID.NO:502) |
hsa-mir-817 | CUGUAUGCCCUCACCGCUCAGC(SEQ.ID.NO:503) |
hsa-mir-821-1 | GCGGCGGCGGCGGAGGCU(SEQ.ID.NO:504) |
hsa-mir-821-2/3 | GCGGCGGCGGCGGAGGCU(SEQ.ID.NO:505) |
hsa-mir-828-3p | UCUAGUAAGAGUGGCAGUCGA(SEQ.ID.NO:506) |
hsa-mir-828-5p | AUGCUGACAUAUUUACUAGAGG(SEQ.ID.NO:507) |
hsa-mir-831-1 | UGGGGCGGAGCUUCCGGAGGCC(SEQ.ID.NO:508) |
hsa-mir-831-2 | UGGGGCGGAGCUUCCGGAGGCC(SEQ.ID.NO:509) |
hsa-mir-831-3/-4/-5 | UGGGGCGGAGCUUCCGGAGGCC(SEQ.ID.NO:510) |
hsa-mir-840-3p | ACUCGGCGUGGCGUCGGUCGUGG(SEQ.ID.NO:511) |
hsa-mir-840-5p | UCGACCGGACCUCGACCGGCUC(SEQ.ID.NO:512) |
hsa-mir-845-1 | AAAGCAUGCUCCAGUGGCGC(SEQ.ID.NO:513) |
hsa-mir-845-2 | AAAGCAUGCUCCAGUGGCGC(SEQ.ID.NO:514) |
hsa-mir-847 | CAGAGAGGACCACUAUGGCGGG(SEQ.ID.NO:515) |
hsa-mir-848 | AUUGCCAUCCCCUAUGGACCAG(SEQ.ID.NO:516) |
hsa-mir-849 | UGUCUACUACUGGAGACACUGG(SEQ.ID.NO:517) |
hsa-mir-850 | UUAGGGCCCUGGCUCCAUCUCC(SEQ.ID.NO:518) |
hsa-mir-853 | UGGGAUCUCCGGGGUCUUGGUU(SEQ.ID.NO:519) |
hsa-mir-857 | AAGGCAGGGCCCCCGCUCCCCGG(SEQ.ID.NO:520) |
hsa-mir-864 | AAAAGCUGAGUUGAGAGG(SEQ.ID.NO:521) |
hsa-mir-151 | UCGAGGAGCUCACAGUCUAGA(SEQ.ID.NO:522) |
表A7.微小RNA发夹前体序列
名称 | 发夹前体(5′→3′) |
>hsa-mir-18b-3p | CUUGUGUUAAGGUGCAUCUAGUGCAGUUAGUGAAGCAGCUUAGAAUCUACUGCCCUAAAUGCCCCUUCUGGCACAGG(SEQ.ID.NO:523) |
>hsa-miR-618 | UUAUUGUGAAAUAUGUCAUUAAUAUGUACUGACAAAGCGUAUCUGUGUAAUAAAUAUGCUUUUUGUCAGUACAUGUUAAUGGUAUAUUUCAUAACAA(SEQ.ID.NO:524) |
>hsa-miR-619 | GCGGCUGCUGGACCCACCCGGCCGGGAAUAGUGCUCCUGGUUGUUUCCGGCUCGCGUGGGUGUGUCGGCGGCGGG(SEQ.ID.NO:525) |
>hsa-miR-620 | CGCCCCCACGUGGCCCCGCCCCCUGAGGCCGGCGCUGCCGCCAUGUUGGGAGCGGGCAGGUUGGGAGCG(SEQ.ID.NO:526) |
>hsa-miR-723-5p | GCCACCUUCCGAGCCUCCAGUACCACGUGUCAGGGCCACAUGAGCUGGGCCUCGUGGGCCUGAUGUGGUGCUGGGGCCUCAGGGGUCUG(SEQ.ID.NO:527) |
>hsa-mir-816 | GGGUUUGGGGAAACGGCCGCUGAGUGAGGCGUCGGCUGUGUUUCUCACCGCGGUCUUUUCCUCCCACUC(SEQ.ID.NO:528) |
>hsa-mir-817 | CUUGGUGACGCUGUAUGCCCUCACCGCUCAGCCCCUGGGGCUGGCUUGGCAGACAGUACAGCAUCCAGGGGAGUCAAGGGCAUGGGGCGAGACCAGA(SEQ.ID.NO:529) |
>hsa-mir-821-1 | GCGGCGGCGGCGGAGGCUGCUGCUGGGGCGGCUGCUGCUGGGGCGGCUGCGGCGGCGGCUGCUGCGGGGGCUGCUGCUGCUGUUGC(SEQ.ID.NO:530) |
>hsa-mir-821-2/3 | GCGGCUGCGGCGGCGGCGGAGGCUGCGGCGGCGACCGUGGCAGAGGCGGUGGCGGAGGCCUCCGUGGCGGAGGCGGAAGC(SEQ.ID.NO:531) |
>hsa-mir-828-3p | CUUCCUCAUGCUGACAUAUUUACUAGAGGGUAAAAUUAAUAACCUUCUAGUAAGAGUGGCAGUCGAAGGGAAG(SEQ.ID.NO:532) |
>hsa-mir-828-5p | CUUCCUCAUGCUGACAUAUUUACUAGAGGGUAAAAUUAAUAACCUUCUAGUAAGAGUGGCAGUCGAAGGGAAG(SEQ.ID.NO:533) |
>hsa-mir-831-1 | GCUCCGCCCCACGUCGCAUGCGCCCCGGGAACGCGUGGGGCGGAGCUUCCGGAGGCCCCGCUCUGCUGCCGACCCUGUGGAGCGGAGGGUGAAGCCUCCGGAUGCCAGUCCCUCAUCGCUGGCCUGGUCGCGCUGUGGCGAAGGGGGCGGAGC(SEQ.ID.NO:534) |
>hsa-mir-831-2 | GCUCCGCCCCACGUCGCAUGCGCCCCGGGAACGCGUGGGGCGGAGCUUCCGGAGGCCCCGCCCUGCUGCCGACCCUGUGGAGCGGAGGGUGAAGCCUCCGGAUGCCAGUCCCUCAUCGCUGGCCCGGUCGCGCUGUGGCGAAGGGGGCGGAGC(SEQ.ID.NO:535) |
>hsa-mir-831-3/-4/-5 | CGCUCCGCCCCACGUCGCAUGCGCCCCGGGAAAGCGUGGGGCGGAGCUUCCGGAGGCCCCGCCCUGCUGCCGACCCUGUGGAGCGGAGGGUGAAGCCUCCGGAUGCCAGUCCCUCAUCGCUGGCCCGGUCGCGCUGUGGCGAAGGGGGCGGAGC(SEQ.ID.NO:536) |
>hsa-mir-840-3p | UUCAUCAAGACCCAGCUGAGUCACUGUCACUGCCUACCAAUCUCGACCGGACCUCGACCGGCUCGUCUGUGUUGCCAAUCGACUCGGCGUGGCGUCGGUCGUGGUAGAUAGGCGGUCAUGCAUACGAAUUUUCAGCUCUUGUUCUGGUGAC(SEQ.ID.NO:537) |
>hsa-mir-840-5p | UUCAUCAAGACCCAGCUGAGUCACUGUCACUGCCUACCAAUCUCGACCGGACCUCGACCGGCUCGUCUGUGUUGCCAAUCGACUCGGCGUGGCGUCGGUCGUGGUAGAUAGGCGGUCAUGCAUACGAAUUUUCAGCUCUUGUUCUGGUGAC(SEQ.ID.NO:538) |
>hsa-mir-845-1 | CGCGAGGCCGGGGUCGAGCGCUUCAGUAGCUCAUGGCUCUGUAGAGUGCGCAUGGCCAAGCAAAGGAAAGCAUGCUCCAGUGGCGCA(SEQ.ID.NO:539) |
>hsa-mir-845-2 | AGUAACCACUUAGUGUGUAUUGACUUGUCAGAAUUUUCAGAAUUUAAAGCAUGCUCCAGUGGCGCA(SEQ.ID.NO:540) |
>hsa-mir-847 | UUACUGUGUCAUUGUUGCUGUCAUUGCUACUGAGGAGUACUGACCAGAAUCAUCUGCAACUCUUAGUUGGCAGAGAGGACCACUAUGGCGGGUAG(SEQ.ID.NO:541) |
>hsa-mir-848 | UGGGCCAGAUUGCCAUCCCCUAUGGACCAGAAGCCAAGGAUCUCUCUAGUGAUGGUCAGAGGGCCCAAAUGGCAGGGAUACCCA(SEQ.ID.NO:542) |
>hsa-mir-849 | GCUUCUGUCUACUACUGGAGACACUGGUAGUAUAAAACCCAGAGUCUCCAGUAAUGGACGGGAGC(SEQ.ID.NO:543) |
>hsa-mir-850 | CUGGGUUAGGGCCCUGGCUCCAUCUCCUUUAGGAAAACCUUCUGUGGGGAGUGGGGCUUCGACCCUAACCCAG(SEQ.ID.NO:544) |
>hsa-mir-853 | CCUGGGCUCUGACCUGAGACCUCUGGGUUCUGAGCUGUGAUGUUGCUCUCGAGCUGGGAUCUCCGGGGUCUUGGUUCAGGG(SEQ.ID.NO:545) |
>hsa-mir-857 | GGGCCCGGCCCCAGGAGCGGGGCCUGGGCAGCCCCGUGUGUUGAGGAAGGAAGGCAGGGCCCCCGCUCCCCGGGCCU(SEQ.ID.NO:546) |
>hsa-mir-864 | CCUUCUCUUCUCAGUUCUUCCCCAAGUUAGGAAAAGCUGAGUUGAGAGGG(SEQ.ID.NO:547) |
>hsa-mir-151 | GUCUCUCUUCAGGGCUCCCGAGACACAGAAACAGACACCUGCCCUCGAGGAGCUCACAGUCUAGAC(SEQ.ID.NO:548) |
表A8.微小RNA序列和发夹前体序列
名称 | 成熟的微小RNA(5`→3`) | 发夹前体序列 |
hsa-miR-544 | AUUCUGCAUUUUUAGCAAGUUC(SEQ.ID.NO:549) | CACCUAGGGAUCUUGUUAAAAAGCAGAUUCUGAUUCAGGGACCAAGAUUCUGCAUUUUUAGCAAGUUCUCAAGUGAUG(SEQ.ID.NO:550) |
在本说明书中,碱基是指通常在天然存在的DNA或RNA中找到的核苷酸碱基中的任何一种。碱基可以是嘌呤或嘧啶。嘌呤碱基的实例包括腺嘌呤(A)和鸟嘌呤(G)。嘧啶碱基的实例包括胸腺嘧啶(T)、胞嘧啶(C)和尿嘧啶(U)。腺嘌呤可被2,6-二氨基嘌呤取代。
已显示本说明书中披露的核酸分子序列含有尿嘧啶碱基。尿嘧啶碱基出现在RNA分子中。本发明还包括DNA分子。该DNA分子的碱基序列与该RNA分子相同,只是在DNA分子中尿嘧啶碱基被胸腺嘧啶碱基取代。
序列中的每个碱基均可与互补的碱基形成Watson-Crick碱基对。本文中使用的Watson-Crick碱基对是指在例如下列碱基:腺嘌呤和胸腺嘧啶(A-T);腺嘌呤和尿嘧啶(A-U);并且胞嘧啶和鸟嘌呤(C-G)之间有氢键相互作用。
等同物是指一些分子,其中例如在SEQ ID NO:1-94中达到30%的连续碱基为摇摆碱基,和/或达到10%,优选达到5%的连续碱基为非互补的。
如在本文中使用的,摇摆碱基是指:在分子序列中1)用尿嘧啶取代胞嘧啶,或2)用鸟嘌呤取代腺嘌呤。这些摇摆碱基取代通常称为UG或GU摇摆。表B示出了分子中连续碱基的数量和摇摆碱基的最大数量。
表B.连续碱基数量和摇摆碱基的最大数量
连续碱基的数量 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 |
摇摆碱基对的最大数量 | 3 | 3 | 3 | 3 | 4 | 4 | 4 | 5 | 5 | 5 | 6 | 6 | 6 | 6 |
本文中使用的术语“非互补”是指插入的、缺失的、错配的或其组合。插入是指在上述任何碱基的连续序列中的嵌入。缺失是指连续序列中存在的任何部分的去除。错配是指用不同的碱基取代连续序列中的一个碱基。
插入、缺失或错配可以发生在连续的序列中的任何位置,例如在分子连续的序列的两个末端之一或分子连续的序列之内。典型地,如果连续的序列相对较短例如长度为从约10至约15个碱基,则缺失或错配发生在连续的序列的末端。如果连续的序列相对较长例如最少16个的连续序列,则插入、缺失或错配可发生在连续序列的任何位置。
例如,当连续碱基的数量是10至19,则连续的碱基中没有一个或只有一个可以为插入的、缺失的或错配的;当连续碱基的数量是20或更多,则允许0个、1个或2个插入、缺失或错配。
除了微小RNA的至少10个连续的核苷酸,该分离的DNA或RNA分子可能还具有一个或多个附加的核苷酸。附加的核苷酸的数量没有上限。典型地,将不多于约500个核苷酸,优选将不多于约300个核苷酸添加到微小RNA的至少10个连续的碱基中。
可以添加任何核苷酸。附加的核苷酸可以包括任何上述的碱基。因此,例如,附加的核苷酸可以是A、G、C、T或U中的一种或多种。
在一个实施例中,微小RNA是发夹前体序列或其片段的一部分。例如,表A1中的SEQ ID NO:95-187示出的适合的发夹前体序列。下面示出了其他的发夹前体序列:表A3的SEQ ID NO:375-466;表A5的SEQ ID NO:482-496;表A7的SEQ ID NO:523-548并且表A8的SEQ ID NO:550。
所述片段可以是发夹前体序列的任何片段,该片段在5’端和/或在3’端包含至少10个,优选至少15个,更优选至少20个核苷酸。优选地,核苷酸序列位于微小RNA存在的发夹前体中。
微小RNA或发夹前体可插入一个载体中,例如一个重组载体。典型地,为了构建包含微小RNA的重组载体,将包含微小RNA序列的发夹前体序列整合到该载体中。参见例如Chen et al.Science2004,303:83-86。
重组载体可以是任何重组载体,例如质粒、粘粒或噬菌体。重组载体通常具有复制起点。该载体可以是例如病毒载体,如腺病毒载体或腺病毒相关病毒(AAV)载体,参见:Ledley 1996,Pharmaceutical Research 13:1595-1614和Verma et al.Nature 1997,387:239-242。
载体可进一步包括选择性标记。合适的选择性标记包括抗药性标记如四环素或庆大霉素,或者可检测的基因标记如β-半乳糖苷酶或荧光素酶。
在一个优选的实施例中,该分离的DNA或RNA分子包含SEQID NO:1-187中示出的任何一个微小RNA序列或发夹前体序列。
在另一个优选的实施例中,该分离的DNA或RNA分子包含SEQ ID NO:281-466中示出的任何一个微小RNA序列或发夹前体序列。
在另一个优选的实施例中,该分离的DNA或RNA分子包含SEQ ID NO:467-496中示出的任何一个微小RNA序列或发夹前体序列。
在另一个优选的实施例中,该分离的DNA或RNA分子包含SEQ ID NO:497-548中示出的任何一个微小RNA序列或发夹前体序列。
在另一个优选的实施例中,该分离的DNA或RNA分子包含SEQ ID NO:549-550中示出的任何一个微小RNA序列或发夹前体序列。
在本说明书中,“分离的”是指该分子基本上不含其他的核酸。基本上不含其他的核酸是指该分子的至少约90%,优选至少约95%,更优选至少约98%不含其他核酸。
优选地,该分子基本上是纯的,这指分子不仅不含其他的核酸,而且不含在该分子的合成和分离中使用的其他材料。在合成中使用的材料包括例如酶。在分离中使用的材料包括例如凝胶,如SDS-PAGE。分子的至少约90%,优选至少约95%,更优选至少约98%不含这些材料。
微小RNA或发夹前体中的碱基序列是高度保守的。由于高度保守性,序列可来自任何哺乳动物的细胞。哺乳动物的实例包括宠物动物象狗和猫、农场动物象牛、马和羊、实验室动物象大鼠、小鼠和兔,以及灵长类动物象猴子和人类。优选地,哺乳动物是人类或小鼠。
修饰的单链微小RNA分子
在另一个实施例中,本发明涉及一种修饰的单链微小RNA分子。该修饰的单链微小RNA分子可以是上述微小RNA分子、发夹前体分子或其等同物中的任何一种,只是所述修饰的分子包括至少一个修饰的部分(即至少一个部分不是未修饰的脱氧核糖核苷酸部分或未修饰的核糖核苷酸部分)。在该实施例中,修饰的微小RNA分子包括最少10个部分,优选最少13个,更优选最少15个,甚至更优选最少18个,最优选最少21个部分。
修饰的微小RNA分子优选包括最多50个部分,更优选最多40个,甚至更优选最多30个,最优选最多25个,最理想是最多23个部分。可以通过将上述任何一个最小值与上述任何一个最大值结合而获得合适的部分的最小和最大数量的范围。
每个修饰的部分均包含结合于主链单元的碱基。主链单元可以是能够稳定结合碱基且形成寡聚链的任何分子单元。在本说明书中,修饰部分的主链单元不包括通常在天然存在的DNA或RNA分子中存在的主链单元。
这些修饰的微小RNA分子增强了对核酸酶的耐受性。因此,与仅包含未修饰的核糖核苷酸部分、仅包含未修饰的脱氧核糖核苷酸部分或同时包含二者的序列相比,该分子对核酸酶的耐受性增加。这些修饰的部分在本领域中是熟知的,并且在例如Kurreck的Eur.J.Biochem.270,1628-1644(2003)中已经加以综述。
耐受的核酸酶可以是核酸外切酶、核酸内切酶或者二者均有。核酸外切酶可以是3’→5’核酸外切酶或5’→3’核酸外切酶。3’→5’人类核酸外切酶的实例包括PNPT1、沃纳综合征螺旋酶(Wernersyndrome helicase)、RRP40、RRP41、RRP42、RRP45和RRP46。5’→3’核酸外切酶的实例包括XRN2和FEN1。核酸内切酶的实例包括Dicer、Drosha、RNase4、核糖核酸酶P、核糖核酸酶H1、DHP1、ERCC-1和OGG1。既可以发挥核酸外切酶又可以发挥核酸内切酶作用的核酸酶实例包括APE1和EXO1。
修饰的部分可以存在于微小RNA分子中的任何位置。例如,为了保护微小RNA分子免受3’→5’核酸外切酶的作用,该分子可以在分子的3’端具有至少一个修饰的部分,优选在3’端具有至少两个修饰的部分。如果期望保护分子免受5’→3’核酸外切酶的作用,微小RNA分子可以在该分子的5’端具有至少一个修饰的部分,优选至少两个修饰的部分。为了增加该分子对核酸内切酶的耐受性,微小RNA分子还可以在分子的5’和3’端之间具有至少一个修饰的部分,优选至少两个修饰的部分。优选地,至少约10%、更优选至少约25%、甚至更优选至少约50%、进一步更加优选至少约75%、最优选至少约95%的部分是被修饰的。在一个实施例中,所有部分都是被修饰(例如,耐核酸酶的)。
在一个修饰的微小RNA分子的实例中,该分子包含至少一个修饰的脱氧核糖核苷酸部分。适合的修饰的脱氧核糖核苷酸部分在本领域中是已知的。这些修饰的脱氧核糖核苷酸部分包括例如作为主链单元的硫代磷酸脱氧核糖基团。见图1中的结构1。包含硫代磷酸(酯)(phosphoroamidate)脱氧核糖核苷酸部分的修饰的微小RNA分子通常称为硫代磷酸(PS)DNA。参见例如Eckstein,Antisense Nucleic Acids Drug Dev.10,117-121(2000)。
修饰的脱氧核糖核苷酸部分的另一个合适的实例是N’3-N’5氨基磷酸(酯)(phosphoroamidate)脱氧核糖核苷酸部分,它包含作为主链单元的N’3-N’5氨基磷酸脱氧核糖基团。见图1中的结构2。包含氨基磷酸脱氧核糖核苷酸部分的寡核苷酸分子通常称为氨基磷酸(NP)DNA。参见例如Gryaznov et al.,J.Am.Chem.Soc.116,3143-3144(1994)。
在另一个修饰的微小RNA分子的实例中,该分子包括至少一个修饰的核糖核苷酸部分。修饰的核糖核苷酸部分的一个合适的实例是在2’位置的核糖核苷酸部分被取代。2’位置的取代基可以是例如C1至C4烷基基团。C1至C4烷基基团可以是饱和或非饱和的,直链的或支链的。C1至C4烷基基团的一些实例包括乙基、异丙基及烯丙基。优选的C1至C4烷基基团是甲基。见图1中的结构3。包含在2’位置用C1至C4烷基基团取代的核糖核苷酸部分的寡核糖核苷酸分子通常被称为2’-O-(C1-C4烷基)RNA,例如2’-O-甲基RNA(OMe RNA)。
修饰的核糖核苷酸部分在2’位置的取代基的另一个合适的实例是C1至C4烷氧基-C1至C4烷基基团。C1至C4烷氧基(烷基氧)和C1至C4烷基基团可包含上述烷基基团中的任何一个。优选的C1至C4烷氧基-C1至C4烷基基团是甲氧乙基。见图1中的结构4。包含多于一个的在2’位置用C1至C4烷氧基-C1至C4烷基基团取代的核糖核苷酸部分的寡核苷酸分子被称为2’-O-(C1至C4烷氧基-C1至C4烷基)RNA,例如2’-O-甲氧乙基RNA(MOE RNA)。
修饰的核糖核苷酸部分的另一个合适的实例是在2’氧原子和4’碳原子之间具有一个亚甲基桥的核糖核苷酸。见图1中的结构5。包含具有在2’氧原子和4’碳原子之间的亚甲基桥的核糖核苷酸部分的寡核糖核苷酸分子通常被称为锁核酸(LNA)。参见例如Kurreck et al.,Nucleic Acids Res.30,1911-1918(2002);Elayadi et al.,Curr.Opinion Invest.Drugs 2,558-561(2001);Φ rum et al.,Curr.Opinion Mol.Ther.3,239-243(2001);Koshkin et al.,Tetrahedron 54,3607-3630(1998);Obika et al.,Tetrahedron Lett.39,5401-5404(1998)。锁核酸可从Proligo(Paris,France和Boulder,Colorado,USA)购得。
修饰的核糖核苷酸部分的另一个合适的实例是在2’位置用氟基取代的核糖核苷酸。这种2’-氟代核糖核苷酸部分在本领域中是已知的。含有2’-氟代核糖核苷酸部分的分子在本文中通常称为2’-氟代核糖核酸(FANA)。见图1中的结构7,Damha etal.,J.Am.Chem.Soc.120,12976-12977(1998)。
在修饰的微小RNA分子的另一个实例中,该分子包括至少一个修饰的部分,该修饰的部分包含结合于作为主链单元的氨基酸残基的碱基。具有至少一个结合于氨基酸残基的碱基的修饰部分在本文中被称为肽核酸(PNA)部分。这些部分是对核酸酶耐受的,而且在本领域中是已知的。具有PNA部分的分子通常称为肽核酸。见图1中的结构6。Nielson,Methods Enzymo.313,156-164(1999);Elayadi,et al,id.;Braasch et al.,Biochemistry 41,4503-4509(2002),Nielsen et al.,Science 254,1497-1500(1991)。
氨基酸可以为任何氨基酸,包括天然的或非天然的氨基酸。天然存在的氨基酸包括例如蛋白质中通常存在的20种最常见氨基酸,即丙氨酸(Ala)、精氨酸(Arg)、天冬酰胺(Asn)、天冬氨酸(Asp)、半胱氨酸(Cys)、谷氨酰胺(Glu)、谷氨酸(Glu)、甘氨酸(Gly)、组氨酸(His)、异亮氨酸(Ileu)、亮氨酸(Leu)、赖氨酸(Lys)、甲硫氨酸(Met)、苯丙氨酸(Phe)、脯氨酸(Pro)、丝氨酸(Ser)、苏氨酸(Thr)、色氨酸(Trp)、酪氨酸(Tyr)和缬氨酸(Val)。
非天然氨基酸可以包括例如烷基、芳基或烷芳基。烷基氨基酸的一些实例包括α-氨基丁酸、β-氨基丁酸、γ-氨基丁酸、δ-氨基戊酸以及ε-氨基己酸。芳基氨基酸的一些实例包括邻-、间-及对-氨基苯甲酸。烷芳基氨基酸的一些实例包括邻-、间-及对-氨基苯乙酸以及γ-苯基-β-氨基丁酸。
非天然存在的氨基酸还包括天然存在的氨基酸的衍生物。天然存在的氨基酸的衍生物可以包括例如将一个或多个化学基团添加至天然存在的氨基酸。
例如,可将一个或多个化学基团添加至苯丙氨酸或酪氨酸残基芳环的2’、3’、4’、5’或6’位置或者色氨酸残基苯环的4’、5’、6’或7’位置中的一个或多个位置上。该基团可以是可添加至芳环的任何化学基团。这些基团的一些实例包括羟基、C1-C4烷氧基、氨基、甲氨基、二甲氨基、硝基、卤素(即氟、氯、溴或碘)或者支链的或直链的C1-C4烷基如甲基、乙基、正丙基、异丙基、正丁基、异丁基或叔丁基。
作为天然存在的氨基酸衍生物的非天然存在氨基酸的其他实例包括正缬氨酸(Nva)、正亮氨酸(Nle)和羟脯氨酸(Hyp)。
氨基酸可以是彼此相同或不同的。碱基通过分子连接键连接于氨基酸单元。连接的实例是亚甲基羰基、乙烯羰基以及乙基连接。(Nielsen et al.,Peptide Nucleic Acids-Protocols and Applications,Horizon Scientific Press,pages 1-19;Nielsen et al.,Science 254:1497-1500)。PNA部分的氨基酸残基的一个实例是N-(2-氨乙基)-甘氨酸。
PNA部分的其他实例包括环己基PNA、反向PNA(retro-inversoPNA)、磷酸PNA(phosphone PNA)、丙酰PNA和氨基脯氨酸PNA部分。对这些PNA部分的描述,可参见Nielsen et al.,Peptide NucleicAcids-Protocols and Applications,Horizon Scientific Press,1-19页的图5。Nielsen et al.第7页上的图5以引用形式结合于此。
PNA可以利用本领域中已知的方法进行化学合成,例如利用改良的Fmoc或tBoc肽合成方案。PNA具有多种理想的性质包括高解链温度(Tm)、与核酸的高度碱基配对特异性以及不带电的分子主链。此外,PNA不赋予RNA酶H对靶RNA的敏感性,并且通常具有良好的代谢稳定性。
肽核酸也可从Applied Biosystems(Foster City,California,USA)购得。
在修饰的微小RNA分子的另一个实例中,该分子包含至少一个吗啉代氨基磷酸核苷酸部分。包含吗啉代氨基磷酸核苷酸部分的分子通常称为吗啉代(MF)核酸。见图1中的结构8。Heasman,Dev.Biol.243,209-214(2002)。吗啉代寡核苷酸可从Gene Tools LLC(Corvallis,Oregon,USA)购得。
在修饰的微小RNA分子的另一个实例中,该分子包含至少一个环己烯(cyclohexene)核苷酸部分。包含环己烯核苷酸部分的分子通常称为环己烯核酸(CeNA)。见图1中的结构10。Wangetal.,J.Am.Chem.Soc.122,8595-8602(2000),Verbeure et al.,Nucleic Acids Res.29,4941-4947(2001)。
在修饰的微小RNA分子的最后一个实例中,该分子包含至少一个三环核苷酸部分。包含三环核苷酸部分的分子通常称为三环核酸(tcDNA)。见图1中的结构9。Steffens et al.,J.Am.Chem.Soc.119,11548-11549(1997),Renneberg et al.,J.Am.Chem.Soc.124,5993-6002(2002)。
该分子可以为嵌合的修饰的微小RNA分子。在本领域中,包含上述任何部分的混合物的嵌合分子也是已知的,而且可以利用本领域中已知方法进行制备。见例如上面引用的参考文献以及Wangetal,Proc.Natl.Acad.Sci.USA 96,13989-13994(1999),Liangetal.,Eur.J.Biochem.269,5753-5758(2002),Lok et al.,Biochemistry 41,3457-3467(2002)和Damha et al.,J.Am.Chem.Soc.120,12976-12977(2002)。
本发明的修饰的微小RNA分子包括至少10个、优选至少13个、更优选至少15个、甚至更优选至少20个连续的碱基,该连续的碱基具有SEQ ID NO:1-94、SEQ ID NO:281-374、SEQ IDNO:467-481、SEQ ID NO:497-522或SEQ ID NO:549中示出的天然存在的微小RNA分子的连续碱基序列中的任何一个,只是该修饰的分子包含至少一个修饰的部分。在一个优选的实施例中,该修饰的微小RNA分子包含SEQ ID NO:1-94、SEQ ID NO:281-374、SEQID NO:467-481、SEQ ID NO:497-522或SEQ ID NO:549中示出的任何微小RNA分子的完整序列。
只要分子中的部分的总数不超过50个,可将具有任何碱基序列的任何数量的附加部分(最高达到40个部分)插入至包含连续碱基序列的部分。附加部分可以插入至连续序列的5’端、3’端或两端。该附加的部分可以包括微小RNA出现的发夹前体或任何其片段在5’端的碱基序列和/或在3’端的碱基序列。分子中的附加部分,如果需要,可以为上述的修饰的或未修饰的部分。
修饰的微小RNA分子包括其等同物。等同物包括上述的摇摆碱基和非互补碱基。
此外,不超过50%,优选不超过30%的连续部分包含脱氧核糖核苷酸主链单元。例如,表C和D示出了19-23个连续碱基的脱氧核糖核苷酸主链单元的最大数量。
在另一个实施例中,除了上述摇摆碱基对和非互补碱基,对应于天然存在的微小RNA序列的位置11的部分可以为插入的、缺失的或错配的。
如上文所定义的,修饰的微小RNA分子优选是分离的,更优选是纯化的。
表C.包含脱氧核糖核苷酸主链单元的50%的连续部分
连续碱基的数量 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 |
脱氧核糖核苷酸主链单元的最大数量 | 5 | 5 | 6 | 6 | 7 | 7 | 8 | 8 | 9 | 9 | 10 | 10 | 11 | 11 |
表D.包含脱氧核糖核苷酸主链单元的30%的连续部分
连续碱基的数量 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 |
脱氧核糖核苷酸主链单元的最大数量 | 3 | 3 | 3 | 3 | 4 | 4 | 4 | 5 | 5 | 5 | 6 | 6 | 6 | 6 |
在另一个实施例中,为了增加上述本发明的修饰的微小RNA分子或分离的DNA或RNA分子对核酸酶的耐受性,可将帽结构连接到分子的一个末端、两个末端和/或两个末端之间。增加对例如核酸外切酶和/或核酸内切酶的耐受性是需要的。任何本领域技术人员已知的可用于增加对核酸酶耐受性的帽结构均可以采用。
这些帽结构的实例包括反向核苷酸帽(inverted nucleotide cap)和化学帽。反向核苷酸帽可以连接到5’和/或3’端。化学帽可以连接到该分子的一个末端、两个末端和/或两个末端之间。
反向核苷酸帽是指连接到修饰的微小RNA分子或者DNA或RNA分子的5’和/或3’端的3’→5’核酸序列。反向帽中的核苷酸最大数量不存在限制,只要它不干扰微小RNA分子或分离的DNA或RNA分子结合到它的靶mRNA即可。任何核苷酸可用于反向核苷酸帽中。通常,核苷酸帽长度少于约40个核苷酸,优选长度少于约30个核苷酸,更优选长度少于约20个核苷酸,甚至更优选长度少于约10个核苷酸。典型地,反向核苷酸帽长度为1个核苷酸。用于反向帽的核苷酸通常为胸腺嘧啶,但可以是任何核苷酸如腺嘌呤、鸟嘌呤、尿嘧啶或胞嘧啶。
化学帽是指本领域技术人员已知的可用于增加核酸的核酸酶耐受性的任何化学基团。这种化学帽的实例包括羟烷基(烷基氢氧化物)或者氨烷基(烷基胺类)。羟烷基有时称为烷二醇基(例如乙二醇)。氨烷基有时称为氨基连接物(amino linker)。
羟烷基或氨烷基中的烷基链可以为直链或支链。存在于烷基链中的碳原子的最小数量是1个,优选至少2个,甚至更优选至少约3个碳原子。
存在于烷基链中的碳原子的最大数量为约18个,优选约16个,更优选约12个。典型的烷基基团包括甲基、乙基和丙基。烷基可以进一步被一个或多个羟基和/或氨基取代。
氨基连接剂的一些实例示于表E中。表E中列出的氨基连接物可从TriLink Biotechnologies,San Diego,CA购得。
分离的微小RNP
另一方面,本发明提供了一种分离的微小RNP,该分离的微小RNP包含上述任何分离的DNA或RNA分子或上述修饰的微小RNA分子。微小RNP中的上述分离的DNA或RNA分子或修饰的微小RNA分子可以结合到蛋白质。
这些蛋白质的实例包括那些属于Ago族系的蛋白。Ago族系的蛋白质实例包括Ago1、2、3和4。典型地,Ago2蛋白质与微小RNA复合体在RNAi中引导靶mRNA切割,而Ago1、3和4阻遏靶mRNA的翻译。
抗微小RNA分子
另一方面,本发明提供了一种抗微小RNA分子。该抗微小RNA的分子可以为上述任何分离的DNA或RNA分子或上述修饰的微小RNA分子中的任何一种,只是抗微小RNA分子的碱基序列与分离的DNA或RNA分子或修饰的微小RNA分子中的碱基序列互补。
抗微小RNA分子序列的实例在表F、F1、F2、F3和F4中示出。
表E.来自TriLink Biotechnologies的氨基连接物
2’-脱氧胞苷-5-C6氨基连接物(3’末端)
2’-脱氧胞苷-5-C6氨基连接物(5’或内部)
3’C3氨基连接物
3’C6氨基连接物
3’C7氨基连接物
5’C12氨基连接物
5’C3氨基连接物
5’C6氨基连接物
C7内部氨基连接物
胸苷-5-C2氨基连接物(5’或内部)
胸苷-5-C6氨基连接物(3’端)
胸苷-5-C6氨基连接物(内部)
表F.表A中微小RNA的抗微小RNA序列
微小RNA | 抗微小RNA序列(5′→3′) |
miR-18b-5p | CUAACUGCACUAGAUGCACCUUA(SEQ.ID.NO:188) |
miR-20b-3p | CUGGAAGUGCCCAUACUACAGU(SEQ.ID.NO:189) |
miR-20b-5p | CUACCUGCACUAUGAGCACUUUG(SEQ.ID.NO:190) |
miR-301b | UGCUUUGACAAUAUCAUUGCACUG(SEQ.ID.NO:191) |
miR-329 | AAAGAGGUUAACCAGGUGUGUU(SEQ.ID.NO:192) |
miR-374b | CACUUAGCAGGUUGUAUUAUAU(SEQ.ID.NO:193) |
miR-421 | CGCCCAAUUAAUGUCUGUUGAU(SEQ.ID.NO:194) |
miR-500 | ACCCUAUAAGCAAUAUUGCACUA(SEQ.ID.NO:195) |
miR-504 | GCAAUGCAACAGCAAUGCAC(SEQ.ID.NO:196) |
miR-604 | UGCUGUUAGCCCUAGCCCCGCA(SEQ.ID.NO:197) |
miR-610 | ACGGUCCUACACUCAAGGCAUG(SEQ.ID.NO:198) |
miR-618 | ACGCUUUGUCAGUACAUAUUAA(SEQ.ID.NO:199) |
miR-619 | ACACACCCACGCGAGCCGGAAA(SEQ.ID.NO:200) |
miR-620 | CCAACCUGCCCGCUCCCAACAU(SEQ.ID.NO:201) |
miR-631 | AAGAGGGAGACCCAGGCUCGGA(SEQ.ID.NO:202) |
miR-720a | ACCAGCUAACAAUACACUGCCA(SEQ.ID.NO:203) |
miR-720b | GCCAGCUAACAAUACACUGCCU(SEQ.ID.NO:204) |
miR-723-3p | CCAGCACCACAUCAGGCCCACG(SEQ.ID.NO:205) |
miR-723-5p | UGUGGCCCUGACACGUGGUACU(SEQ.ID.NO:206) |
miR-730 | AAGAAGUGCACCGCGAAUGUUU(SEQ.ID.NO:207) |
miR-732 | GGGACCGACAGCAGAAUCCUUU(SEQ.ID.NO:208) |
miR-734 | ACGGUUUUACCAGACAGUAUUA(SEQ.ID.NO:209) |
miR-755 | UCACAUUUGCCUGCAGAGAUUU(SEQ.ID.NO:210) |
miR-800a | AAGUGGAUGACCCUGUACGAUU(SEQ.ID.NO:211) |
miR-800b | AACUGGAUGUCCCUGUAUGAUU(SEQ.ID.NO:212) |
miR-803 | CGAUGUAGUCCAAAGGCACAUA(SEQ.ID.NO:213) |
miR-805 | AUAUUAGGAACACAUCGCAAAA(SEQ.ID.NO:214) |
miR-806 | ACUCAGUAAUGGUAACGGUUU(SEQ.ID.NO:215) |
miR-809 | ACACCGAGGAGCCCAUCAUGAU(SEQ.ID.NO:216) |
miR-810 | CUGCAUGACGGCCUGCAAGACA(SEQ.ID.NO:217) |
miR-811 | GUCUCAGUUUCCUCUGCAAACA(SEQ.ID.NO:218) |
miR-812 | GCGAACUCACCACGGACAACCU(SEQ.ID.NO:219) |
miR-814 | GGAGACUCACAAGUUCCUGC(SEQ.ID.NO:220) |
miR-815 | GCACAACCCUAGUGGCGCCAUU(SEQ.ID.NO:221) |
miR-816 | CACUCAGCGGCCGUUUCCCCAA(SEQ.ID.NO:222) |
miR-817 | GCUGAGCGGUGAGGGCAUACAG(SEQ.ID.NO:223) |
miR-818 | AGGACUAUAGAACUUUCCCCCU(SEQ.ID.NO:224) |
miR-819 | AGAGGCAGGGUAGUGUAAUGGA(SEQ.ID.NO:225) |
miR-821 | CAGCAGCCUCCGCCGCCGCCGC(SEQ.ID.NO:226) |
miR-822 | UAGCAGAAGCAUUUCCGCACAC(SEQ.ID.NO:227) |
微小RNA | 抗微小RNA序列(5′→3′) |
miR-824 | ACACACCAAGGAUAAUUUCUCC(SEQ.ID.NO:228) |
miR-825-3p | UUCAGUUAUCAAUCUGUCACAA(SEQ.ID.NO:229) |
miR-825-5p | CUCGUGACAUGAUGAUCCCCGA(SEQ.ID.NO:230) |
miR-826 | CUCUACUCACAGAAGUGUCAAU(SEQ.ID.NO:231) |
miR-828-3p | UUCGACUGCCACUCUUACUAGA(SEQ.ID.NO:232) |
miR-828-5p | CCUCUAGUAAAUAUGUCAGCAU(SEQ.ID.NO:233) |
miR-829-5p | CUGCACUUUUAUGAAUAAGCUC(SEQ.ID.NO:234) |
miR-829-3p | GACUAGCUUAUACAUAAAAUUA(SEQ.ID.NO:235) |
miR-831 | GGCCUCCGGAAGCUCCGCCCCA(SEQ.ID.NO:236) |
miR-832 | UGACCCACCUGGAGAUCCAUGG(SEQ.ID.NO:237) |
miR-834 | CCUGGCACACAGUAGACCUUCA(SEQ.ID.NO:238) |
miR-835-5p | UCCAGCCCCUCCAGGGCUUCCU(SEQ.ID.NO:239) |
miR-835-3p | AGGUGGAGCCCUGAGAACCGGA(SEQ.ID.NO:240) |
miR-837 | UGAGGGGCCUCAGCCUCCUGGU(SEQ.ID.NO:241) |
miR-838 | AUCGGGAGGGGACUGAGCCUGA(SEQ.ID.NO:242) |
miR-839-5p | UCGGGGCAGCUCAGUACAGGA(SEQ.ID.NO:243) |
miR-839-3p | AUCCUGUACUGAGCUGCCCCG(SEQ.ID.NO:244) |
miR-840-3p | CCACGACCGACGCCACGCCGAG(SEQ.ID.NO:245) |
miR-840-5p | AGCCGGUCGAGGUCCGGUCGA(SEQ.ID.NO:246) |
miR-841 | GACCAAGAAAUAGCCUUUCAAA(SEQ.ID.NO:247) |
miR-842 | GCAAAGGUAAUUGCUGUUUUCG(SEQ.ID.NO:248) |
miR-843 | CUAGAAGCUCACAGUCUAGUUG(SEQ.ID.NO:249) |
miR-845 | UGCGCCACUGGAGCAUGCUUU(SEQ.ID.NO:250) |
miR-846 | GCUCCCCACAGACCCAGAGCCG(SEQ.ID.NO:251) |
miR-847 | CCCGCCAUAGUGGUCCUCUCUG(SEQ.ID.NO:252) |
miR-848 | CUGGUCCAUAGGGGAUGGCAAU(SEQ.ID.NO:253) |
miR-849 | CCAGUGUCUCCAGUAGUAGACA(SEQ.ID.NO:254) |
miR-850 | GGAGAUGGAGCCAGGGCCCUAA(SEQ.ID.NO:255) |
miR-851 | CCUCGGGAUGGCGCCCGUUCAC(SEQ.ID.NO:255) |
miR-852 | GCACACAAUAAAUGUUUGCUGA(SEQ.ID.NO:256) |
miR-853 | AACCAAGACCCCGGAGAUCCCA(SEQ.ID.NO:257) |
miR-854 | UCGGUCCCUCGGGCCAGGGCAG(SEQ.ID.NO:258) |
miR-855-3p | UGUGGGUGUGUGCAUGAGCGUG(SEQ.ID.NO:259) |
miR-855-5p | CACACUCACACACACACACUCA(SEQ.ID.NO:260) |
miR-857 | CGGGGAGCGGGGGCCCUGCCUU(SEQ.ID.NO:261) |
miR-864 | CCCUCUCAACUCAGCUUUU(SEQ.ID.NO:262) |
miR-867 | GUCUAGACUGUGAGCUCCUCGA(SEQ.ID.NO:263) |
miR-869 | GCACAUGUUCUGCGGCCCACCA(SEQ.ID.NO:264) |
miR-871-3p | CAGCACAGAGAUGGACAGAUAG(SEQ.ID.NO:265) |
miR-871-5p | CCGCUUGAGCUAACUCCGACCCG(SEQ.ID.NO:266) |
miR-92b | GGAGGCCGGGACGAGUGCAAUA(SEQ.ID.NO:267) |
miR-896 | GCUGCCGUAUAUGUGAUGUCAC(SEQ.ID.NO:268) |
miR-883 | GAGGUUUCCCGUGUAUGUUUCA(SEQ.ID.NO:269) |
微小RNA | 抗微小RNA序列(5′→3′) |
miR-884 | GAACUUGCUAAAAAUGCAGAAU(SEQ.ID.NO:270) |
miR-885 | ACUGAAACCAAGUAUGGGUCGC(SEQ.ID.NO:271) |
miR-886 | AGCACAGACUUGCUGUGAUGUU(SEQ.ID.NO:272) |
miR-887 | CACCUGAUAAAACUGAGGUAUA(SEQ.ID.NO:273) |
miR-888 | ACACAACCUCAGUGUUUCCAGG(SEQ.ID.NO:274) |
miR-889 | GAUAGAGUGCAGACCAGGGUCU(SEQ.ID.NO:275) |
miR-890 | CCUCAUGGAAGGGUUCCCCACU(SEQ.ID.NO:276) |
miR-891 | UCAGUAGAGAUUGUUUCAACAC(SEQ.ID.NO:277) |
miR-892 | GGUGAUUCACAAAGAAAUCCAU(SEQ.ID.NO:278) |
miR-893 | ACAGCCGCCGCCGCCGCCGCCG(SEQ.ID.NO:279) |
miR-894 | UUCCCUUCUUUCCUCCCGUCUU(SEQ.ID.NO:280) |
表F1.表A2中的微小RNA的抗微小RNA序列
微小RNA | 抗微小RNA序列(5′→3′) |
hsa-miR-100516 | UGACUGACAGCUUUUUGAGUA(SEQ.ID.NO:551) |
hsa-miR-100604 | UGCUGUUAGCCCUAGCCCCGCA(SEQ.ID.NO:552) |
hsa-miR-100610-5p | ACGGUCCUACACUCAAGGCAUG(SEQ.ID.NO:553) |
hsa-miR-100631 | AAGAGGGAGACCCAGGCUCGGA(SEQ.ID.NO:554) |
hsa-miR-100701 | CCUGAACUAACAAGUAACCUU(SEQ.ID.NO:555) |
hsa-miR-100723 | CCAGCACCACAUCAGGCCCACG(SEQ.ID.NO:556) |
hsa-miR-100730 | AAGAAGUGCACCGCGAAUGUUU(SEQ.ID.NO:557) |
hsa-miR-100732 | GGGACCGACAGCAGAAUCCUU(SEQ.ID.NO:558) |
hsa-miR-100754 | AACCCAAUAUCAAACAUAUCA(SEQ.ID.NO:559) |
hsa-miR-100760 | UACACCACUCCCAUCUCAGUGC(SEQ.ID.NO:560) |
hsa-miR-100814 | AGGAGACUCACAAGUUCCUGC(SEQ.ID.NO:561) |
hsa-miR-100815 | ACACAACCCUAGUGGCGCCAUU(SEQ.ID.NO:562) |
hsa-miR-100818 | GGACUAUAGAACUUUCCCCCU(SEQ.ID.NO:563) |
hsa-miR-100819 | AGAGGCAGGGUAGUGUAAUGGA(SEQ.ID.NO:564) |
hsa-miR-100824 | ACACACCAAGGAUAAUUUCUCC(SEQ.ID.NO:565) |
hsa-miR-100825-3p | UUUCAGUUAUCAAUCUGUCACA(SEQ.ID.NO:566) |
hsa-miR-100825-5p | UCUCGUGACAUGAUGAUCCCCGA(SEQ.ID.NO:567) |
hsa-miR-100829-3p | ACUAGCUUAUACAUAAAAUUA(SEQ.ID.NO:568) |
hsa-miR-100835-5p | CUCCAGCCCCUCCAGGGCUUCCU(SEQ.ID.NO:569) |
hsa-miR-100842 | GCAAAGGUAAUUGCUGUUUUCG(SEQ.ID.NO:570) |
hsa-miR-100843-3p | CUAGAAGCUCACAGUCUAGUUG(SEQ.ID.NO:571) |
微小RNA | 抗微小RNA序列(5′→3′) |
hsa-miR-100843-5p | CCCAGCUAGAUUGUAAGCUCCUU(SEQ.ID.NO:572) |
hsa-miR-100846 | CUCCCCACAGACCCAGAGCCG(SEQ.ID.NO:573) |
hsa-miR-1008S1 | CCUCGGGAUGGCGCCCGUUCAC(SEQ.ID.NO:574) |
hsa-miR-100852 | GCACACAAUAAAUGUUUGCUGA(SEQ.ID.NO:575) |
hsa-mjR-1008S4 | UCGGUCCCUCGGGCCAGGGCAG(SEQ.ID.NO:576) |
hsa-miR-100855-3p | UGUGGGUGUGUGCAUGAGCGUG(SEQ.ID.NO:577) |
hsa-mjR-100855-5p | ACACACUCACACACACACACUCA(SEQ.ID.NO:578) |
hsa-miR-100869-3p | AAGGUGAUGGUCAGCAGACAUA(SEQ.ID.NO:579) |
hsa-miR-100869-5p | GCACAUGUUCUGCGGCCCACCA(SEQ.ID.NO:580) |
hsa-miR-100871-3p | AAGGGUCAGUAAGCACCCGCG(SEQ.ID.NO:581) |
hsa-miR-100871-5p | CCGCUUGAGCUAACUcCGACCcG(SEQ.ID.NO:582) |
hsa-mjR-100885 | CUGAAACCAAGUAUGGGUCGC(SEQ.ID.NO:583) |
hsa-mjR-100887-3p | ACACAACCUCAGUGuUucCAGG(sEQ.ID.NO:584) |
hsa-miR-100887-5p | cACCUGAUAAAACUGAGGUAUA(SEQ.ID.NO:585) |
hsa-miR-100891-3p | UGAAUUACUUUGUAAACCACCA(SEQ.ID.NO:586) |
hsa-miR-100891-5p | UGGUGAUUCACAAAGAAAUCCA(SEQ.ID.NO:587) |
hsa-miR-101001 | AGGGGCCUCAGCCUCCUGGU(SEQ.ID.NO:588、 |
hsa-miR-146b | AGCCUAUGGAAUUCAGUUCUCA(SEQ.ID.NO:589) |
hsa-miR-147b | UAGCAGAAGCAUUUCCGCACAC(SEQ.ID.NO:590) |
hsa-miR-181d | ACCCACCGACAACAAUGAAUGUU(SEQ.ID.NO:591) |
hsa-miR-18b | CUAACUGCACUAGAUGCACCUUA(SEQ.ID.NO:592) |
hsa-mfR-193b | AGCGGGACUUUGAGGGCCAGUU(SEQ.ID.NO:593) |
hsa-miR-200001 | UCAGUGGCUCAGGUUCGUUGCA(SEQ.ID.NO:594) |
hsa-miR-200002 | AAAGAGGUUAACCAUGUAUUAU(SEQ.ID.NO:595) |
hsa-miR-200003 | CAACUGAUGCCUUUCCAAGUA(SEQ.ID.NO:596) |
hsa-miR-200004 | UCAAUGACUCAGGUAAGUUGCA(SEQ.ID.NO:597) |
hsa-miR-200007 | CCCUGCGCCAUCUCCUCUAC(SEQ.ID.NO:598) |
hsa-miR-200008 | AACUCCGAUAUGCAAUGGGUA(SEQ.ID.NO:599) |
hsa-miR-20b | CUACCUGCACUAUGAGCACUUUG(SEQ.ID.NO:600) |
hsa-miR-20b-3p | CUGGAAGUGCCCAUACUACAGU(SEQ.ID.NO:601) |
hsa-miR-216b | UCACAUUUGCCUGCAGAGAUUU(SE0.ID.NO:602) |
hsa-miR-301b | UGCUUUGACAAUAUCAUUGCACUG(SEQ.ID.NO:603) |
hsa-miR-329 | AAAGAGGUUAACCAGGUGUGUU(SEQ.ID.NO:604) |
hsa-miR-33b | GCAAUGCAACAGCAAUGCAC(SEQ.ID.NO:605) |
hsa-miR-374b | CACUUAGCAGGUUGUAUUAUAU(SEQ.ID.NO:606) |
hsa-miR-375 | UCACGCGAGCCGAACGAACAAA(SEQ.ID.NO:607) |
hsa-miR-376a | ACGUGGAUUUUCCUCUAUGAU(SEQ.ID.NO:608) |
hsa-miR-376b | AACAUGGAUUUUCCUCUAUGAU(SEQ.ID.NO:609) |
微小RNA | 抗微小RNA序列(5′→3′) |
hsa-miR-376c | AAGUGGAUGACCCUGUACGAUU(SEQ.ID.NO:610) |
hsa-miR-376c | AAGUGGAUGACCCUGUACGAUU(SEQ.ID.NO:611) |
hsa-miR-377 | ACAAAAGUUGCCUUUGUGUGAU(SEQ.ID.NO:612) |
hsa-miR-378 | CCUUCUGACUCCAAGUCCAGU(SEQ.ID.NO:613) |
hsa-miR-379 | CCUACGUUCCAUAGUCUACCA(SEQ.ID.NO:614) |
hsa-miR-380 | AAGAUGUGGACCAUAUUACAUA(SEQ.ID.NO:615) |
hsa-miR-410 | ACAGGCCAUCUGUGUUAUAUU(SEQ.ID.NO:616) |
hsa-miR-421-3p | CGCCCAAUUAAUGUCUGUUGAU(SEQ.ID.NO:617) |
hsa-miR-429 | ACGGUUUUACCAGACAGUAUUA(SEQ.ID.NO:618) |
hsa-miR-431 | UGCAUGACGGCCUGCAAGACA(SEQ.ID.NO:619) |
hsa-miR-432 | CCACCCAAUGACCUACUCCAAGA(SEQ.ID.NO:620) |
hsa-miR-433 | ACACCGAGGAGCCCAUCAUGAU(SEQ.ID.NO:621) |
hsa-miR-449a | ACCAGCUAACAAUACACUGCCA(SEQ.ID.NO:622) |
hsa-miR-449b | GCCAGCUAACAAUACACUGCCU(SEQ.ID.NO:623) |
hsa-miR-450a | AUAUUAGGAACACAUCGCAAAA(SEQ.ID.NO:624) |
hsa-miR-451 | AACUCAGUAAUGGUAACGGUUU(SEQ.ID.NO:625) |
hsa-miR-452 | UCAGUUUCCUCUGCAAACAGUU(SEQ.ID.NO:626) |
hsa-miR-453 | UGCGAACUCACCACGGACAACCU(SEQ.ID.NO:627) |
hsa-miR-454 | ACCCUAUAAGCAAUAUUGCACUA(SEQ.ID.NO:628) |
hsa-miR-455-5p | CGAUGUAGUCCAAAGGCACAUA(SEQ.ID.NO:629) |
hsa-miR-484 | AUCGGGAGGGGACUGAGCCUGA(SEQ.ID.NO:630) |
hsa-miR-485-3p | AGAGAGGAGAGCCGUGUAUGAC(SEQ.ID.NO:631) |
hsa-miR-485-5p | GAAUUCAUCACGGCCAGCCUCU(SEQ.ID.NO:632) |
hsa-mir-486_os | AUCCUGUACUGAGCUGCCCCG(SEQ.ID.NO:633) |
hsa-miR-487 | AACUGGAUGUCCCUGUAUGAUU(SEQ.ID.NO:634) |
hsa-miR-488 | AGACCAAGAAAUAGCCUUUCAA(SEQ.ID.NO:635) |
hsa-miR-490 | ACCCACCUGGAGAUCCAUGG(SEQ.ID.NO:636) |
hsa-miR-493 | CCUGGCACACAGUAGACCUUCA(SEQ.ID.NO:637) |
hsa-miR-497 | ACAAACCACAGUGUGCUGCUG(SEQ.ID.NO:638) |
hsa-miR-502 | UGAAUCCUUGCCCAGGUGCAUU(SEQ.ID.NO:639) |
hsa-miR-503 | CUGCAGAACUGUUCCCGCUGCUA(SEQ.ID.NO:640) |
hsa-miR-505 | AGGAAACCAGCAAGUGUUGACG(SEQ.ID.NO:641) |
hsa-miR-509-3p | CUACCCACAGACGUACCAAUCA(SEQ.ID.NO:642) |
hsa-miR-514 | UCUACUCACAGAAGUGUCAAU(SEQ.ID.NO:643) |
hsa-miR-92b | GAGGCCGGGACGAGUGCAAUA(SEQ.ID.NO:644) |
表F2.表A4中的微小RNA的抗微小RNA序列
微小RNA | 抗微小RNA序列(5′→3′) |
hsa-miR-100516 | UGACUGACAGCUUUUUGAGUA(SEQ.ID.NO:645) |
hsa-miR-100701 | CCUGAACUAACAAGUAACCUU(SEQ.ID.NO:646) |
hsa-miR-100760 | UACACCACUCCCAUCUCAGUGC(SEQ.ID.NO:647) |
hsa-miR-100885 | CUGAAACCAAGUAUGGGUCGC(SEQ.ID.NO:648) |
hsa-miR-100887-3p | ACACAACCUCAGUGUUUCCAGG(SEQ.ID.NO:649) |
hsa-miR-100887-5p | CACCUGAUAAAACUGAGGUAUA(SEQ.ID.NO:650) |
微小RNA | 抗微小RNA序列(5′→3′) |
hsa-miR-100891-3p | UGAAUUACUUUGUAAACCACCA(SEQ.ID.NO:651) |
hsa-miR-100891-5p | UGGUGAUUCACAAAGAAAUCCA(SEQ.ID.NO:652) |
hsa-miR-200001 | UCAGUGGCUCAGGUUCGUUGCA(SEQ.ID.NO:653) |
hsa-miR-200002 | AAAGAGGUUAACCAUGUAUUAU(SEQ.ID.NO:654) |
hsa-miR-200003 | CAACUGAUGCCUUUCCAAGUA(SEQ.ID.NO:655) |
hsa-miR-200004 | UCAAUGACUCAGGUAAGUUGCA(SEQ.ID.NO:656) |
hsa-miR-200007 | CCCUGCGCCAUCUCCUCUAC(SEQ.ID.NO:657) |
hsa-miR-200008 | AACUCCGAUAUGCAAUGGGUA(SEQ.ID.NO:658) |
hsa-mir-486_os | UCCUGUACUGAGCUGCCCCG(SEQ.ID.NO:659) |
表F3.表A6中的微小RNA的抗微小RNA序列
微小RNA | 抗微小RNA序列(5′→3′) |
hsa-mir-18b-3p | GCCAGAAGGGGCAUUUAGGGCAG(SEQ.ID.NO:660) |
hsa-miR-618 | ACGCUUUGUCAGUACAUAUUAA(SEQ.ID.NO:661) |
hsa-miR-619 | ACACACCCACGCGAGCCGGAAA(SEQ.ID.NO:662) |
hsa-miR-620 | CCAACCUGCCCGCUCCCAACAU(SEQ.ID.NO:663) |
hsa-miR-723-5p | UCAUGUGGCCCUGACACGUGGUACU(SEQ.ID.NO:664) |
hsa-mir-816 | UCACUCAGCGGCCGUUUCCCCAA(SEQ.ID.NO:665) |
hsa-mir-817 | GCUGAGCGGUGAGGGCAUACAG(SEQ.ID.NO:666) |
hsa-mir-821-1 | AGCCUCCGCCGCCGCCGC(SEQ.ID.NO:667) |
hsa-mir-821-2/3 | AGCCUCCGCCGCCGCCGC(SEQ.ID.NO:668) |
hsa-mir-828-3p | UCGACUGCCACUCUUACUAGA(SEQ.ID.NO:669) |
hsa-mir-828-5p | CCUCUAGUAAAUAUGUCAGCAU(SEQ.ID.NO:670) |
hsa-mir-831-1 | GGCCUCCGGAAGCUCCGCCCCA(SEQ.ID.NO:671) |
hsa-mir-831-2 | GGCCUCCGGAAGCUCCGCCCCA(SEQ.ID.NO:672) |
hsa-mir-831-3/-4/-5 | GGCCUCCGGAAGCUCCGCCCCA(SEQ.ID.NO:673) |
hsa-mir-840-3p | CCACGACCGACGCCACGCCGAGU(SEQ.ID.NO:674) |
hsa-mir-840-5p | GAGCCGGUCGAGGUCCGGUCGA(SEQ.ID.NO:675) |
hsa-mir-845-1 | GCGCCACUGGAGCAUGCUUU(SEQ.ID.NO:676) |
hsa-mir-845-2 | GCGCCACUGGAGCAUGCUUU(SEQ.ID.NO:677) |
hsa-mir-847 | CCCGCCAUAGUGGUCCUCUCUG(SEQ.ID.NO:678) |
hsa-mir-848 | CUGGUCCAUAGGGGAUGGCAAU(SEQ.ID.NO:679) |
hsa-mir-849 | CCAGUGUCUCCAGUAGUAGACA(SEQ.ID.NO:680) |
hsa-mir-850 | GGAGAUGGAGCCAGGGCCCUAA(SEQ.ID.NO:681) |
hsa-mir-853 | AACCAAGACCCCGGAGAUCCCA(SEQ.ID.NO:682) |
hsa-mir-857 | CCGGGGAGCGGGGGCCCUGCCUU(SEQ.ID.NO:683) |
hsa-mir-864 | CCUCUCAACUCAGCUUUU(SEQ.ID.NO:684) |
hsa-mir-151 | CUAGACUGUGAGCUCCUCGA(SEQ.ID.NO:685) |
表F4.表A8中的微小RNA的抗微小RNA序列
微小RNA | 抗微小RNA序列(5′→3′) |
hsa-miR-544 | AUUCUGCAUUUUUAGCAAGUUC(SEQ.ID.NO:686) |
抗微小RNA分子可用上述的方法对修饰的微小RNA分子进行修饰。在一个实施例中,抗微小RNA分子中的连续部分与相应的微小RNA分子互补。抗微小RNA分子的互补程度受到与上述修饰的微小RNA分子相同的限制的影响,包括与摇摆碱基对相关的限制以及与插入、缺失和错配相关的限制。
在一个优选的实施例中,如果抗微小RNA分子仅包含未修饰的部分,则该抗微小RNA分子在至少10个连续碱基中包含至少一个碱基,该至少一个碱基与微小RNA非互补和/或包含一个化学帽。
在另一个优选的实施例中,如果抗微小RNA分子中的至少10个连续碱基与微小RNA分子完全(即100%)互补,则该抗微小RNA分子在至少10个连续碱基中包含至少一个修饰的部分和/或包含一个化学帽。
在另外一个实施例中,抗微小RNA分子中对应于天然存在的微小RNA位置11的位置上的部分是非互补的。如上所述,通过引入插入、缺失或错配,可使得抗微小RNA分子中对应于天然存在的微小RNA位置11的部分成为非互补的。
应用
本发明的微小RNA分子和抗微小RNA分子具有多种体外、离体和体内应用。
例如,可将本发明的微小RNA分子和/或抗微小RNA分子引入细胞内,以研究微小RNA的功能并从整体上研究微小RNA分子。
在一个实施例中,用合适的抗微小RNA分子抑制细胞内的微小RNA。可替代地,通过将一种或多种其他的微小RNA分子引入细胞内,可增强细胞内的微小RNA分子的活性。通过观察细胞内与微小RNA活性的抑制或增强相关的变化可推断出微小RNA的功能。
在本发明的一个方面,本发明涉及一种用于抑制细胞内微小RNP活性的方法。用于抑制细胞内微小RNP活性的方法包括将本发明的单链抗微小RNA分子引入细胞内。该微小RNP包含微小RNA分子。任何抗微小RNA分子均可用于抑制细胞内微小RNP活性的方法,只要抗微小RNA分子(受上述限制的影响)与存在于微小RNP中的微小RNA互补。
本发明的抗微小RNA分子通过结合宿主细胞内微小RNP中的微小RNA,能够抑制微小RNP的活性。微小RNP的活性是指切割靶序列或阻遏靶序列的翻译。靶序列可以是部分或完全与微小RNA内的碱基序列互补的任何序列。
例如,本发明的微小RNA分子和抗微小RNA分子可以用作基因表达的调节剂,该基因至少部分与抗微小RNA分子或微小RNA互补。例如,如果一个特定的微小RNA对细胞的存活是有益的,可将本发明合适的分离的微小RNA引入细胞以促进其存活。可替代地,如果一个特定的微小RNA是有害的(例如诱导凋亡,诱导癌症等),为了抑制该微小RNA的活性并降低损伤,可将合适的抗微小RNA分子引入细胞。
可使用本领域技术人员已知的任何方法将微小RNA分子和/或抗微小RNA分子引入细胞。例如,可将微小RNA分子和/或抗微小RNA分子直接注射入细胞,例如通过显微注射。可替代地,可将该分子与细胞接触,优选通过递送系统的辅助。
有用的递送系统包括例如脂质体和带电脂质。脂质体典型地在其水性中心内包裹寡核苷酸分子。由于电荷相反,带电脂质大体上形成脂质-寡核苷酸分子复合体。
这些脂质体-寡核苷酸分子复合体或脂质-寡核苷酸分子复合体通常利用内吞作用而内化进入细胞。脂质体或带电脂质通常包含辅助脂质,该辅助脂质可使内体(endosomal)膜破裂并释放寡核苷酸分子。
用于将微小RNA分子或抗微小RNA引入细胞的其他方法包括使用递送载体如树状聚合物、可生物降解的聚合物、氨基酸的聚合物、糖的聚合物以及结合寡核苷酸的纳米颗粒。此外,Pluronic胶(Pluronic gel)可作为一种储存池(depot reservoir)用于在一个延长的时间段内递送抗微小RNA寡核苷酸分子。上述方法描述在例如Hughes et al.,Drug Discovery Today 6,303-315(2001);Liang et al.,Eur.J.Biochem.269 5753-5758(2002);以及Becker et al.,In AntisenseTechnology in the Central Nervous System(Leslie,R.A.,Hunter,A.J.& Robertson,H.A.,eds),pp.147-157,Oxford University Press中。
可使用本领域技术人员已知的任何方法,将微小RNA分子或抗微小RNA分子靶向特定细胞。例如,可将微小RNA分子或抗微小RNA分子结合到与细胞上的受体特异识别的抗体或配体上。
可使用本领域技术人员已知的任何方法,将分子给予哺乳动物。合适的给药模式的一些实例包括口服给药和系统给药。系统给药可以为肠内或非肠道给药。可采用液体或固体(例如片剂、凝胶胶囊)制剂。
分子的非肠道给药包括例如静脉内、肌内和皮下注射。例如,如在本领域中已知的,可通过持续释放将分子给予哺乳动物。持续释放给药是一种在特定的时间段内达到一定药物水平的药物递送方法。
其他给药途径包括口服、局部、支气管内或鼻内给药。对于口服给药可采用液体或固体制剂。适于口服给药的制剂的一些实例包括片剂、凝胶胶囊、丸剂、含片、酏剂、悬浮液、糖浆和薄片。支气管内给药包括喷雾吸入剂。对于鼻内给药,本发明的分子的给药可通过喷雾器或液体喷雾而实现。
本发明的分子可存在于合适的药用载体中。在本说明书中,如本领域技术人员理解的,认为药用载体与运载体或赋形剂同义。载体实例包括淀粉、乳剂、糖、某些类型的粘土、凝胶、硬脂酸或其盐类、硬脂酸镁或钙、滑石粉、植物脂肪或油、树胶和乙二醇。
药用载体还可包含下列物质中的一种或多种:稳定剂、表面活性剂,优选非离子型表面活性剂以及可选地盐和/或缓冲剂。
稳定剂可以是例如氨基酸如甘氨酸;或寡糖如蔗糖、四糖(tetralose)、乳糖或葡聚糖。可替代地,稳定剂可以是糖醇如甘露醇;或其组合。优选地,稳定剂或稳定剂的组合构成该分子重量的从约0.1%至约10%的重量。
表面活性剂优选为非离子型表面活性剂例如聚山梨醇酯(polysorbate)。合适的表面活性剂的一些实例包括Tween20、Tween80;聚乙二醇或聚氧乙烯聚氧丙二醇,例如从约0.001%(w/v)至约10%(w/v)的Pluronic F-68。
盐或缓冲剂可以是任何盐或缓冲剂,例如分别为氯化钠或磷酸钠/钾盐。优选地,缓冲剂将本发明分子的pH维持在约5.5至约7.5的范围内。该盐和/或缓冲剂对于将渗透压维持在适于哺乳动物给药的水平也很有用。优选地,盐或缓冲剂以约150mM至约300mM的大致等渗的浓度存在。
药用载体还可以包含一种或多种常规添加剂。这些添加剂的一些实例包括助溶剂例如甘油;抗氧化剂例如苯扎氯铵(季铵化合物的混合物,称为“夸脱”)、苯甲醇、三氯叔丁醇或氯丁醇;麻醉剂例如吗啡衍生物;或等渗剂等,如上所述。为了进一步预防氧化或其他变质,分子可以在具有气密性塞子的密封瓶子中在氮气条件下保存。
本发明的微小RNA分子和/或抗微小RNA分子的另一种体外应用是作为诊断工具使用的。出于这个目的,可以对微小RNA分子和/或抗微小RNA分子进行标记。
本发明的分子可以按照本领域中已知的任何方法进行标记。例如,已经描述了标记寡核苷酸的方法,如Leary et al.,1983.Proc.Nat..Acid.Sci.USA 80:4045;Renz and Kurz 1984.Nuc..Acids Res.12:3435;Richardson and Gumport 1983.Nuc..AcidsRes.11:6167;Smith et al.1985.Nuc..Acids Res.13:2399;Meinkoth and Wahl,Anal.1984.Biochem.138:267;and Ausubel,F.M.et al.(Eds.)Current Protocols inMolecular Biology,John Wiley & Sons,Inc.,New York,1999,每个均以引用的方式结合于此。
标记可以是放射活性的。有用的放射活性标记的一些实例包括32P、125I、131I、35S、14C和3H。放射活性标记的应用已经描述在U.K.2,034,323、U.S.4,358,535和U.S.4,302,204中。
非放射活性标记的一些实例包括酶和生色团。有用的酶标记物包括在底物中引起可检测到的变化的酶。一些有用的酶及其底物包括例如辣根过氧化物酶(连苯三酚和邻苯二胺)、β-半乳糖苷酶(荧光素-β-D-吡喃半乳糖苷)以及碱性磷酸酶(5-溴-4-氯-3-吲哚磷酸盐/硝基四唑蓝)。酶标记的使用已经描述在U.K.2,019,404,EP63,879in Ausubel,F.M.et al.(Eds.),Rotman 1961.Proc.Natl.Acad.Sci.USA47:1981-1991,and by Current Protocols in Molecular Biology,JohnWiley & Sons,Inc.,New York(1999)。
有用的生色团包括例如荧光的、化学发光的以及生物发光的分子及染料。一些在本发明中有用的特异生色团包括例如荧光素、罗丹明、Cy3、Cy5、德克萨斯红、藻红蛋白、伞形酮(7-羟基香豆素)、鲁米诺(luminol)。
可使用本领域熟知的方法将标记与本发明的分子结合。该标记可以通过分子上的官能团直接连接。探针可以包含或者可使其包含这样的官能团。一些合适的官能团的实例包括例如氨基、羰基、巯基、马来酰亚胺、异氰酸盐(酯)、异硫氰酸盐(酯)。
可替代地,可通过偶联剂(例如二醛、碳二亚胺、二马来酰亚胺等)的方式将标记(如酶和生色分子)结合到分子上。还可借助于配体和受体的方式将标记结合于分子,其中配体利用上述方法连接于分子,该受体则用于将配体结合到标记物上。任何已知的配体-受体组合均是合适的。一些合适的配体-受体对包括例如生物素-亲和素或-抗生物素蛋白链菌素和抗体-抗原。优选生物素-亲和素组合。
一些微小RNA表达在特异性组织或细胞中。下面在表G和表G1中示出了本发明的微小RNA在不同组织中的表达。表G和表G1以百分比示出了相对于每个特定文库中已鉴定的微小RNA总数的相对克隆频率。在表G和表G1中,特定微小RNA的表达延续了几页。
如果微小RNA在一种组织或细胞类型中的表达比它在其他组织或细胞类型中的表达多约3倍,优选多约4倍,更优选多约5倍,则认为它在该组织或细胞类型中为特异性富集。例如,微小RNAhsa-mir-20b在B细胞源淋巴瘤BL41中表达(0.05%表达);在胚胎源细胞系/肿瘤NT2/D1中表达(0.37%表达)、在NCCIT(0.72%表达)和Hek(0.13%表达)中表达;在小细胞肾上腺癌细胞系SW13(感染或不感染黄热病病毒时,分别表达2.01%和2.93%)中表达以及在导管乳腺癌HCC38(0.09%表达)中表达。认为微小RNAhsa-mir-20b在小细胞肾上腺癌细胞系SW13中富集,因为它的表达比它在其他组织或细胞类型中的表达多约3倍。
因此,例如,本发明的抗微小RNA分子可作为探针以识别特定的组织或细胞类型。
此外,本发明的微小RNA分子和/或抗微小RNA分子可以用于微小RNA表达分析的微阵列中。例如,本发明的抗微小RNA分子可以标记在微阵列中。可以加入含有微小RNA的样品并检测杂交。这种微阵列可用于例如在诊断性分析中测定癌症患者临床样品中的微小RNA表达,并有助于诊断和某些癌症类型的风险评估的分期。
表G:以%表示的相对于每个特定文库已鉴定的微小RNA总数的相对克隆频率。
表中的“-”表示0%。
表G1:以%表示的相对于每个特定文库已鉴定的微小RNA总数的相对克隆频率。
实施例
实施例1:材料和方法
总RNA的分离、克隆和注解(annotation)
如前所述,从100-200μg的总RNA中分离出小RNA,并进行克隆。注解是基于来自以下的信息:GenBank(http://www.ncbi.nih.gov/Genbank/)、人类tRNA序列数据集(http://rna.wustl.edu/GtRDB/Hs/Hs-seqs.html)、人类sn/snoRNA序列数据集(http://mbcr.bcm.tmc.edu/smallRNA/Database,snoRNA-LBME-dbathttp://www-snorna.biotoul.fr/index.php以及NONCODE v1 at http://noncode.bioinfo.org.cn/)、微小RNA注册发行(registry release)的5.1版以及来自UCSC(http://genome.ucse.edu)的人类基因组集合17版的重复元件注解。
细胞系和组织
征得患者亲属的书面同意,患者死后2小时后对脑垂体进行解剖。出于隐私原因,掩饰了患者的身份。人乳腺癌细胞系MCF7和SkBr3是Dr.Neal Rosen(Memorial Sloan-Kettering Cancer Center,NY)赠送的,该细胞在补充了100单位/ml青霉素、100μg/ml链霉素、4mM谷氨酰胺和10%热灭活的胎牛血清的DME:F12培养基的1:1混合物中,在5% CO2中37℃下孵育。人神经母细胞瘤细胞系BE(2)-M17(ATCC:CRL-2267)在补充了非必需氨基酸、10%热灭活的胎牛血清的OptiMem:F12培养基的1:1混合物中,在5%CO2中37℃下孵育。
实施例2:新的miRNA基因的预测
我们通过使用保守性过滤器(conservation filters)以及发夹的结构特征和折叠能(Folding energy)来预测微小RNA前体。我们将这些预测的序列与来自人类组织和细胞系的克隆结果进行比较,并与其他哺乳动物中已经实验证实的微小RNA序列进行比较。在应用相似性考虑时,我们遵循Rfam,其中,多于45%的人类记录(human entries)得到了与其他哺乳动物中的微小RNA相似性的支持。表1示出了已证实的预测。图2A示出将miR-200簇扩展到包括一个另外的成员,该成员已经通过从人类组织克隆而被证实,位于miR-200a下游约1000个核苷酸(表1)。图2B证实了在miR-369附近鉴定出2种其他微小RNA基因,一个通过克隆证实,一个通过它与小鼠同系物的序列相似性而得到支持(表1)。
表1.已知微小RNA附近的预测微小RNA基因的支持证据
通过克隆支持的预测的微小RNA基因
1列出了前体的坐标。当预测的miRNA位于已知的miRNA簇附近时,列出整个簇的坐标,从第一个miRNA前体的起始坐标到最后一个miRNA前体的终末坐标。
2染色体号、链和坐标取自UCSC的2003年7月的人类基因组的build34(hg16)(http://genome.ucsc.edu)。
3预测的miRNA坐标位于与已知簇成员相同的染色体和链上。
4给克隆的miRNA起了新的名称。当来自前体主干(stem)两侧的miRNA被鉴定且与我们的预测相符,它们则带3p和5p进行命名。
5存在利用相似性的三种类型的支持证据。
Claims (80)
1.一种分离的DNA或RNA分子,所述分离的DNA或RNA分子包含至少10个连续的碱基,所述连续的碱基具有在SEQ IDNO:1-94中示出的微小RNA中的一种序列,只是达到30%的所述碱基可以为摇摆碱基,并且达到10%的所述连续的碱基可以是非互补的。
2.根据权利要求1所述的一种分离的分子,进一步包括出现在SEQ ID NO:95-187或其任何片段中示出的发夹前体序列中的5’端碱基序列和/或3’端碱基序列。
3.根据权利要求2所述的一种分离的分子,其中所述发夹前体序列是微小RNA出现在其中的序列。
4.根据权利要求1所述的一种分离的分子,其中所述微小RNA被整合入一种载体中。
5.根据权利要求1所述的一种分离的分子,其中所述分离的分子是一种DNA分子。
6.根据权利要求1所述的一种分离的分子,其中所述分离的分子是一种RNA分子。
7.根据权利要求1所述的一种分离的分子,其中所述分离的分子进一步包括一个帽结构。
8.根据权利要求7所述的一种分离的分子,其中所述帽结构是反向核苷酸帽。
9.根据权利要求7所述的一种分离的分子,其中所述帽结构是化学帽。
10.根据权利要求1所述的一种分离的分子,其中所述分离的分子包括SEQ ID NO:1-94中示出的微小RNA序列中的任何一个。
11.根据权利要求1所述的一种分离的分子,其中所述分离的分子包括SEQ ID NO:1-187中示出的序列中的任何一个。
12.一种修饰的单链微小RNA分子,所述修饰的单链微小RNA分子在一个分子主链上包含最少10个部分和最多50个部分,所述分子主链包含多个主链单元,每个部分包含结合于一个主链单元的一个碱基,其中:
至少10个连续碱基具有与SEQ ID NO:1-94中示出的微小RNA分子中的连续的碱基序列相同的序列,只是达到30%的所述碱基对可以为摇摆碱基对,并且达到10%的连续碱基可以为插入的、缺失的、错配的或其组合;
不超过50%的所述连续部分包含脱氧核糖核苷酸主链单元,并且
至少一个部分不是未修饰的脱氧核糖核苷酸部分或未修饰的核糖核苷酸部分。
13.根据权利要求12所述的一种分子,进一步包括出现在SEQ IDNO:95-187或其任何片段中示出的任何一种发夹前体序列的5’端的碱基序列和/或3’端的碱基序列。
14.根据权利要求13所述的一种分子,其中所述发夹前体序列是微小RNA出现在其中的序列。
15.根据权利要求12所述的一种分子,其中所述分子被修饰以增强对核酸酶的耐受性。
16.一种分离的单链抗微小RNA分子,所述分离的单链抗微小RNA分子在分子主链上包含最少10个部分和最多50个部分,所述分子主链包含多个主链单元,每个部分包含一个结合于一个主链单元的碱基,每个碱基与互补碱基形成Watson-Crick碱基对,其中:
至少10个连续碱基具有与SEQ ID NO:1-94中示出的任何一个微小RNA分子中的连续碱基序列互补的序列,只是达到30%的碱基对可以为摇摆碱基对并且达到10%的连续碱基可以为插入的、缺失的、错配的或其组合;
不超过50%的所述连续部分包含脱氧核糖核苷酸主链单元;以及
所述分子能够抑制微小RNP的活性。
17.根据权利要求16所述的一种分子,其中在对应于微小RNA的位置11的位置上的部分是非互补的。
18.根据权利要求16所述的一种分子,其中达到5%的所述连续部分与微小RNA分子中的连续碱基序列是非互补的。
19.根据权利要求18所述的一种分子,其中非互补部分为插入的、缺失的、错配的或其组合。
20.根据权利要求16所述的一种分子,该分子具有表F中示出的抗微小RNA序列中的任何一个。
21.根据权利要求16所述的一种分子,其中所述部分的至少一个是修饰的脱氧核糖核苷酸部分。
22.根据权利要求21所述的一种分子,其中所述修饰的脱氧核糖核苷酸是硫代磷酸脱氧核糖核苷酸部分。
23.根据权利要求21所述的一种分子,其中所述修饰的脱氧核糖核苷酸是N’3-N’5氨基磷酸脱氧核糖核苷酸部分。
24.根据权利要求16所述的一种分子,其中所述部分的至少一个是修饰的核糖核苷酸部分。
25.根据权利要求24所述的一种分子,其中所述修饰的核糖核苷酸在2’位置被取代。
26.根据权利要求25所述的一种分子,其中在所述2’位置的取代基是C1至C4烷基。
27.根据权利要求26所述的一种分子,其中所述烷基是甲基。
28.根据权利要求28所述的一种分子,其中所述烷基是烯丙基。
29.根据权利要求25所述的一种分子,其中在所述2’位置的取代基是C1至C4烷氧基-C1至C4烷基。
30.根据权利要求29所述的一种分子,其中所述C1至C4烷氧基-C1至C4烷基是甲氧乙基。
31.根据权利要求24所述的一种分子,其中所述修饰的核糖核苷酸在2’氧原子和4’碳原子之间具有一个亚甲基桥。
32.根据权利要求16所述的一种分子,其中所述部分的至少一个是肽核酸部分。
33.根据权利要求16所述的一种分子,其中所述部分的至少一个是2’-氟代核糖核苷酸部分。
34.根据权利要求16所述的一种分子,其中所述部分的至少一个是吗啉代氨基磷酸核苷酸部分。
35.根据权利要求16所述的一种分子,其中所述部分的至少一个是三环核苷酸部分。
36.根据权利要求16所述的一种分子,其中所述部分的至少一个是环己烯核苷酸部分。
37.根据权利要求16所述的一种分子,其中所述分子是嵌合分子。
38.根据权利要求16所述的一种分子,其中所述分子包括至少一个修饰的部分以增强对核酸酶的耐受性。
39.根据权利要求38所述的一种分子,其中所述核酸酶是一种核酸外切酶。
40.根据权利要求39所述的一种分子,其中所述分子在5’端包含至少一个修饰的部分。
41.根据权利要求39所述的一种分子,其中所述分子在5’端包含至少两个修饰的部分。
42.根据权利要求39所述的一种分子,其中所述分子在3’端包含至少一个修饰的部分。
43.根据权利要求39所述的一种分子,其中所述分子在3’端包含至少两个修饰的部分。
44.根据权利要求39所述的一种分子,其中所述分子在5’端包含至少一个修饰的部分并且在3’端包含至少一个修饰的部分。
45.根据权利要求39所述的一种分子,其中所述分子在5’端包含至少两个修饰的部分并且在3’端包含至少两个修饰的部分。
46.根据权利要求39所述的一种分子,其中所述分子在所述分子的5’端、3’端,或两个末端包含一个帽结构。
47.根据权利要求46所述的一种分子,其中所述分子包含一个化学帽。
48.根据权利要求46所述的一种分子,其中所述分子包含一个反向核苷酸帽。
49.根据权利要求16所述的一种分子,其中所述核酸酶是一种核酸内切酶。
50.根据权利要求49所述的一种分子,其中所述分子在5’端和3’端之间包含至少一个修饰的部分。
51.根据权利要求49所述的一种分子,其中所述分子在5’端和3’端之间包含一个化学帽。
52.根据权利要求16所述的一种分子,其中所述部分的全部是耐核酸酶的。
53.一种用于抑制细胞内微小RNP活性的方法,所述微小RNP包含微小RNA分子,所述方法包括将根据权利要求16所述的单链抗微小RNA分子引入所述细胞内,其中所述抗微小RNA与所述微小RNA分子互补。
54.根据权利要求53所述的一种方法,对应于所述微小RNA分子的位置11的位置处的所述抗微小RNA分子中的部分是非互补的。
55.一种分离的微小RNP,所述分离的微小RNP包含根据权利要求1所述的分离的DNA或RNA分子。
56.一种分离的微小RNP,所述分离的微小RNP包含根据权利要求12所述的分离的单链微小RNA分子。
57.一种分离的DNA或RNA分子,所述分离的DNA或RNA分子包含至少10个连续的碱基,所述连续的碱基具有在SEQ IDNO:281-374中示出的微小RNA中的一种序列,只是达到30%的碱基可以为摇摆碱基,并且达到10%的连续碱基可以为摇摆碱基,并且达到10%的连续碱基可以是非互补的。
58.一种分离的DNA或RNA分子,所述分离的DNA或RNA分子包括至少10个连续的碱基,所述连续的碱基具有SEQ IDNO:467-481中示出的微小RNA中的一种序列,只是达到30%的碱基可以为摇摆碱基,并且达到10%的连续碱基可以为摇摆碱基,并且达到10%的连续碱基可以是非互补的。
59.一种分离的DNA或RNA分子,所述分离的DNA或RNA分子包括至少10个连续的碱基,所述连续的碱基具有SEQ IDNO:497-522中示出的微小RNA中的一种序列,只是达到30%的碱基可以为摇摆碱基,并且达到10%的连续碱基可以为摇摆碱基,并且达到10%的连续碱基可以是非互补的。
60.一种分离的DNA或RNA分子,所述分离的DNA或RNA分子包括至少10个连续的碱基,所述连续的碱基具有SEQ IDNO:549中示出的微小RNA中的一种序列,只是达到30%的碱基可以为摇摆碱基,并且达到10%的连续碱基可以为摇摆碱基,并且达到10%的连续碱基可以是非互补的。
61.一种修饰的单链微小RNA分子,所述修饰的单链微小RNA分子在分子主链上包含最少10个部分和最多50个部分,所述分子主链包含多个主链单元,每个部分均包含结合于一个主链单元的碱基,其中:
至少10个连续的碱基具有与SEQ ID NO:281-374中示出的微小RNA分子中的连续碱基序列相同的序列,只是达到30%的碱基对可以为摇摆碱基对,并且达到10%的所述连续碱基可以为插入的、缺失的、错配的或其组合;
不超过50%的所述连续部分包含脱氧核糖核苷酸主链单元,并且
至少一个部分不是未修饰的脱氧核糖核苷酸部分或未修饰的核糖核苷酸部分。
62.一种修饰的单链微小RNA分子,所述修饰的单链微小RNA分子在分子主链上包含最少10个部分和最多50个部分,所述分子主链包含多个主链单元,每个部分均包含结合于一个主链单元的碱基,其中:
至少10个连续的碱基具有与SEQ ID NO:467-481中示出的微小RNA分子中的连续碱基序列相同的序列,只是达到30%的碱基对可以为摇摆碱基对,并且达到10%的所述连续碱基可以为插入的、缺失的、错配的或其组合;
不超过50%的所述连续部分包含脱氧核糖核苷酸主链单元,并且
至少一个部分不是未修饰的脱氧核糖核苷酸部分或未修饰的核糖核苷酸部分。
63.一种修饰的单链微小RNA分子,所述修饰的单链微小RNA分子在分子主链上包含最少10个部分和最多50个部分,所述分子主链包含多个主链单元,每个部分均包含结合于一个主链单元的碱基,其中:
至少10个连续的碱基具有与SEQ ID NO:497-522中示出的微小RNA分子中的连续碱基序列相同的序列,只是达到30%的碱基对可以为摇摆碱基对,并且达到10%的所述连续碱基可以为插入的、缺失的、错配的或其组合;
不超过50%的所述连续部分包含脱氧核糖核苷酸主链单元,并且
至少一个部分不是未修饰的脱氧核糖核苷酸部分或未修饰的核糖核苷酸部分。
64.一种修饰的单链微小RNA分子,所述修饰的单链微小RNA分子在分子主链上包含最少10个部分和最多50个部分,所述分子主链包含多个主链单元,每个部分均包含结合于一个主链单元的碱基,其中:
至少10个连续的碱基具有与SEQ ID NO:549中示出的微小RNA分子中的连续碱基序列相同的序列,只是达到30%的碱基对可以为摇摆碱基对,并且达到10%的所述连续碱基可以为插入的、缺失的、错配的或其组合;
不超过50%的所述连续部分包含脱氧核糖核苷酸主链单元,并且
至少一个部分不是未修饰的脱氧核糖核苷酸部分或未修饰的核糖核苷酸部分。
65.一种分离的单链抗微小RNA分子,所述分离的单链抗微小RNA分子在分子主链上包含最少10个部分和最多50个部分,所述分子主链包含多个主链单元,每个部分均包含结合于一个主链单元的碱基,每个碱基与互补碱基形成Watson-Crick碱基对,其中:
至少10个连续碱基具有与SEQ ID NO:281-374中示出的任何一个微小RNA分子中的连续碱基序列互补的序列,只是达到30%的碱基对可以为摇摆碱基对,并且达到10%的连续碱基可以为插入的、缺失的、错配的或其组合;
不超过50%的所述连续部分包含脱氧核糖核苷酸主链单元;并且
所述分子能够抑制微小RNP的活性。
66.一种分离的单链抗微小RNA分子,所述分离的单链抗微小RNA分子在分子主链上包含最少10个部分和最多50个部分,所述分子主链包含多个主链单元,每个部分均包含结合于一个主链单元的碱基,每个碱基与互补碱基形成Watson-Crick碱基对,其中:
至少10个连续碱基具有与SEQ ID NO:467-481中示出的任何一个微小RNA分子中的连续碱基序列互补的序列,只是达到30%的碱基对可以为摇摆碱基对,并且达到10%的连续碱基可以为插入、缺失、错配或其组合;
不超过50%的所述连续部分包含脱氧核糖核苷酸主链单元;并且
所述分子能够抑制微小RNP的活性。
67.一种分离的单链抗微小RNA分子,所述分离的单链抗微小RNA分子在分子主链上包含最少10个部分和最多50个部分,所述分子主链包含多个主链单元,每个部分均包含结合于一个主链单元的碱基,每个碱基与互补碱基形成Watson-Crick碱基对,其中:
至少10个连续碱基具有与SEQ ID NO:497-522中示出的任何一个微小RNA分子中的连续碱基序列互补的序列,只是达到30%的碱基对可以为摇摆碱基对,并且达到10%的连续碱基可以为插入的、缺失的、错配的或其组合;
不超过50%的所述连续部分包含脱氧核糖核苷酸主链单元;并且
所述分子能够抑制微小RNP的活性。
68.一种分离的单链抗微小RNA分子,所述分离的单链抗微小RNA分子在分子主链上包含最少10个部分和最多50个部分,所述分子主链包含多个主链单元,每个部分均包含结合于一个主链单元的碱基,每个碱基与互补碱基形成Watson-Crick碱基对,其中:
至少10个连续碱基具有与SEQ ID NO:549中示出的任何一个微小RNA分子中的连续碱基序列互补的序列,只是达到30%的碱基对可以为摇摆碱基对,并且达到10%的连续碱基可以为插入的、缺失的、错配的或其组合;
不超过50%的所述连续部分包含脱氧核糖核苷酸主链单元;并且
所述分子能够抑制微小RNP的活性。
69.一种用于抑制细胞内微小RNP活性的方法,所述微小RNP包含微小RNA分子,所述方法包括将根据权利要求65所述的单链抗微小RNA分子引入所述细胞内,其中所述抗微小RNA与所述微小RNA分子互补。
70.一种用于抑制细胞内微小RNP活性的方法,所述微小RNP包含微小RNA分子,所述方法包括将根据权利要求66所述的单链抗微小RNA分子引入所述细胞内,其中所述抗微小RNA与所述微小RNA分子互补。
71.一种用于抑制细胞内微小RNP活性的方法,所述微小RNP包含微小RNA分子,所述方法包括将根据权利要求67所述的单链抗微小RNA分子引入所述细胞内,其中所述抗微小RNA与所述微小RNA分子互补。
72.一种用于抑制细胞内微小RNP活性的方法,所述微小RNP包含微小RNA分子,所述方法包括将根据权利要求68所述的单链抗微小RNA分子引入所述细胞内,其中所述抗微小RNA与所述微小RNA分子互补。
73.一种分离的微小RNP,所述分离的微小RNP包含根据权利要求57所述的分离的DNA或RNA分子。
74.一种分离的微小RNP,所述分离的微小RNP包含根据权利要求58所述的分离的DNA或RNA分子。
75.一种分离的微小RNP,所述分离的微小RNP包含根据权利要求59所述的分离的DNA或RNA分子。
76.一种分离的微小RNP,所述分离的微小RNP包含根据权利要求60所述的分离的DNA或RNA分子。
77.一种分离的微小RNP,所述分离的微小RNP包含根据权利要求61所述的分离的单链微小RNA分子。
78.一种分离的微小RNP,所述分离的微小RNP包含根据权利要求62所述的分离的单链微小RNA分子。
79.一种分离的微小RNP,所述分离的微小RNP包含根据权利要求63所述的分离的单链微小RNA分子。
80.一种分离的微小RNP,所述分离的微小RNP包含根据权利要求64所述的分离的单链微小RNA分子。
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2006
- 2006-05-01 EP EP06752071A patent/EP1883709A4/en not_active Withdrawn
- 2006-05-01 AU AU2006242225A patent/AU2006242225B2/en not_active Ceased
- 2006-05-01 US US11/919,393 patent/US8247543B2/en not_active Expired - Fee Related
- 2006-05-01 CN CN2006800219385A patent/CN101535331B/zh not_active Expired - Fee Related
- 2006-05-01 EP EP11007683A patent/EP2400020A1/en not_active Withdrawn
- 2006-05-01 WO PCT/US2006/016767 patent/WO2006119266A2/en active Application Filing
- 2006-05-01 EP EP13168804.6A patent/EP2631293A3/en not_active Withdrawn
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- 2006-05-01 JP JP2008509245A patent/JP5173793B2/ja not_active Expired - Fee Related
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2012
- 2012-05-11 US US13/469,689 patent/US8754203B2/en not_active Expired - Fee Related
-
2013
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Also Published As
Publication number | Publication date |
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JP2008539699A (ja) | 2008-11-20 |
EP2631294A3 (en) | 2013-11-20 |
CA2605701A1 (en) | 2006-11-09 |
US20140045258A1 (en) | 2014-02-13 |
EP2400020A1 (en) | 2011-12-28 |
EP2631293A3 (en) | 2013-11-20 |
EP2631292A3 (en) | 2013-11-20 |
EP1883709A4 (en) | 2010-10-13 |
US20100273255A1 (en) | 2010-10-28 |
CA2605701C (en) | 2015-12-08 |
WO2006119266A3 (en) | 2009-05-22 |
US20120244613A1 (en) | 2012-09-27 |
US9212360B2 (en) | 2015-12-15 |
US8247543B2 (en) | 2012-08-21 |
EP2631294A2 (en) | 2013-08-28 |
AU2006242225B2 (en) | 2012-01-12 |
EP2631292A2 (en) | 2013-08-28 |
EP2631293A2 (en) | 2013-08-28 |
AU2006242225A1 (en) | 2006-11-09 |
JP5173793B2 (ja) | 2013-04-03 |
US8754203B2 (en) | 2014-06-17 |
CN101535331B (zh) | 2013-01-30 |
EP1883709A2 (en) | 2008-02-06 |
WO2006119266A2 (en) | 2006-11-09 |
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