CA2730565A1 - Detection assays and use thereof - Google Patents
Detection assays and use thereof Download PDFInfo
- Publication number
- CA2730565A1 CA2730565A1 CA2730565A CA2730565A CA2730565A1 CA 2730565 A1 CA2730565 A1 CA 2730565A1 CA 2730565 A CA2730565 A CA 2730565A CA 2730565 A CA2730565 A CA 2730565A CA 2730565 A1 CA2730565 A1 CA 2730565A1
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- Prior art keywords
- oligonucleotide
- sequence
- binding
- reporter
- seq
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- CWERGRDVMFNCDR-UHFFFAOYSA-M thioglycolate(1-) Chemical group [O-]C(=O)CS CWERGRDVMFNCDR-UHFFFAOYSA-M 0.000 description 1
- 229940104230 thymidine Drugs 0.000 description 1
- MNRILEROXIRVNJ-UHFFFAOYSA-N tioguanine Chemical compound N1C(N)=NC(=S)C2=NC=N[C]21 MNRILEROXIRVNJ-UHFFFAOYSA-N 0.000 description 1
- 229960003087 tioguanine Drugs 0.000 description 1
- 238000012546 transfer Methods 0.000 description 1
- 125000002221 trityl group Chemical group [H]C1=C([H])C([H])=C([H])C([H])=C1C([*])(C1=C(C(=C(C(=C1[H])[H])[H])[H])[H])C1=C([H])C([H])=C([H])C([H])=C1[H] 0.000 description 1
- 239000012588 trypsin Substances 0.000 description 1
- HDZZVAMISRMYHH-KCGFPETGSA-N tubercidin Chemical compound C1=CC=2C(N)=NC=NC=2N1[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O HDZZVAMISRMYHH-KCGFPETGSA-N 0.000 description 1
- 102000003298 tumor necrosis factor receptor Human genes 0.000 description 1
- DRTQHJPVMGBUCF-UHFFFAOYSA-N uracil arabinoside Natural products OC1C(O)C(CO)OC1N1C(=O)NC(=O)C=C1 DRTQHJPVMGBUCF-UHFFFAOYSA-N 0.000 description 1
- 229940045145 uridine Drugs 0.000 description 1
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Classifications
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/48—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving transferase
- C12Q1/485—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving transferase involving kinase
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6804—Nucleic acid analysis using immunogens
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N2333/00—Assays involving biological materials from specific organisms or of a specific nature
- G01N2333/435—Assays involving biological materials from specific organisms or of a specific nature from animals; from humans
- G01N2333/705—Assays involving receptors, cell surface antigens or cell surface determinants
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N2333/00—Assays involving biological materials from specific organisms or of a specific nature
- G01N2333/90—Enzymes; Proenzymes
- G01N2333/91—Transferases (2.)
- G01N2333/912—Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
- G01N2333/91205—Phosphotransferases in general
- G01N2333/9121—Phosphotransferases in general with an alcohol group as acceptor (2.7.1), e.g. general tyrosine, serine or threonine kinases
- G01N2333/91215—Phosphotransferases in general with an alcohol group as acceptor (2.7.1), e.g. general tyrosine, serine or threonine kinases with a definite EC number (2.7.1.-)
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N2333/00—Assays involving biological materials from specific organisms or of a specific nature
- G01N2333/90—Enzymes; Proenzymes
- G01N2333/914—Hydrolases (3)
- G01N2333/948—Hydrolases (3) acting on peptide bonds (3.4)
- G01N2333/95—Proteinases, i.e. endopeptidases (3.4.21-3.4.99)
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N2500/00—Screening for compounds of potential therapeutic value
- G01N2500/02—Screening involving studying the effect of compounds C on the interaction between interacting molecules A and B (e.g. A = enzyme and B = substrate for A, or A = receptor and B = ligand for the receptor)
Landscapes
- Chemical & Material Sciences (AREA)
- Organic Chemistry (AREA)
- Life Sciences & Earth Sciences (AREA)
- Health & Medical Sciences (AREA)
- Zoology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Engineering & Computer Science (AREA)
- Wood Science & Technology (AREA)
- Analytical Chemistry (AREA)
- Immunology (AREA)
- Microbiology (AREA)
- Molecular Biology (AREA)
- Physics & Mathematics (AREA)
- Biotechnology (AREA)
- Biophysics (AREA)
- Biochemistry (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Pathology (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US96233307P | 2007-07-27 | 2007-07-27 | |
| US60/962,333 | 2007-07-27 | ||
| PCT/US2008/070643 WO2009018003A2 (en) | 2007-07-27 | 2008-07-21 | Detection assays and use thereof |
Publications (1)
| Publication Number | Publication Date |
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| CA2730565A1 true CA2730565A1 (en) | 2009-02-05 |
Family
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Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| CA2730565A Abandoned CA2730565A1 (en) | 2007-07-27 | 2008-07-21 | Detection assays and use thereof |
Country Status (7)
| Country | Link |
|---|---|
| US (1) | US20100159446A1 (enExample) |
| EP (1) | EP2191268A2 (enExample) |
| JP (1) | JP2010534836A (enExample) |
| CN (1) | CN101952719A (enExample) |
| AU (1) | AU2008282557A1 (enExample) |
| CA (1) | CA2730565A1 (enExample) |
| WO (1) | WO2009018003A2 (enExample) |
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| Publication number | Priority date | Publication date | Assignee | Title |
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| WO2002102820A1 (en) | 2001-06-20 | 2002-12-27 | Nuevolution A/S | Nucleoside derivatives for library preparation |
| IL163822A0 (en) | 2002-03-15 | 2005-12-18 | Nuevolution As | An improved method for synthesising templated molecules |
| US10730906B2 (en) | 2002-08-01 | 2020-08-04 | Nuevolutions A/S | Multi-step synthesis of templated molecules |
| ES2640279T3 (es) | 2002-10-30 | 2017-11-02 | Nuevolution A/S | Procedimiento para la síntesis de un complejo bifuncional |
| US9121110B2 (en) | 2002-12-19 | 2015-09-01 | Nuevolution A/S | Quasirandom structure and function guided synthesis methods |
| US20070026397A1 (en) | 2003-02-21 | 2007-02-01 | Nuevolution A/S | Method for producing second-generation library |
| US11118215B2 (en) | 2003-09-18 | 2021-09-14 | Nuevolution A/S | Method for obtaining structural information concerning an encoded molecule and method for selecting compounds |
| JP2008541698A (ja) * | 2005-05-03 | 2008-11-27 | アンサンブル ディスカバリー コーポレイション | 核酸検出のためのターンオーバープローブおよびその使用 |
| ES2897529T3 (es) | 2005-12-01 | 2022-03-01 | Nuevolution As | Métodos de codificación enzimática para la síntesis eficiente de bibliotecas grandes |
| US20100159455A1 (en) * | 2006-09-18 | 2010-06-24 | Ensemble Discovery | Receptor family profiling |
| EP2066813A2 (en) * | 2006-09-28 | 2009-06-10 | Ensemble Discovery Corporation | Compositions and methods for biodetection by nucleic acid-templated chemistry |
| US20190300945A1 (en) | 2010-04-05 | 2019-10-03 | Prognosys Biosciences, Inc. | Spatially Encoded Biological Assays |
| US10787701B2 (en) | 2010-04-05 | 2020-09-29 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
| RS54482B1 (sr) | 2010-04-05 | 2016-06-30 | Prognosys Biosciences, Inc. | Biološka testiranja sa prostornim kodiranjem |
| WO2011127933A1 (en) | 2010-04-16 | 2011-10-20 | Nuevolution A/S | Bi-functional complexes and methods for making and using such complexes |
| US20120258881A1 (en) * | 2010-11-22 | 2012-10-11 | The University Of Chicago | Methods and/or Use of Oligonucleotide Conjugates for Assays and Microscopy/Imaging Detections |
| US20140161729A1 (en) * | 2011-04-07 | 2014-06-12 | Cornell University | Cofluorons and methods of making and using them |
| JP2014511865A (ja) * | 2011-04-07 | 2014-05-19 | コーネル ユニバーシティー | 水溶液中で多量化できるシリル単量体、およびその使用法 |
| US20140194383A1 (en) * | 2011-04-07 | 2014-07-10 | Cornell University | Monomers capable of dimerizing in an aqueous solution, and methods of using same |
| US20140296181A1 (en) * | 2011-04-07 | 2014-10-02 | Coferon, Inc. | Methods of modulating oncogenic fusion proteins |
| WO2012139110A2 (en) | 2011-04-08 | 2012-10-11 | Prognosys Biosciences, Inc. | Peptide constructs and assay systems |
| GB201106254D0 (en) | 2011-04-13 | 2011-05-25 | Frisen Jonas | Method and product |
| JP2013074824A (ja) * | 2011-09-30 | 2013-04-25 | Toyobo Co Ltd | Ｍｄｒ１遺伝子の多型を検出するためのプローブ |
| CA2867144C (en) | 2012-03-27 | 2019-07-02 | Ventana Medical Systems, Inc. | Signaling conjugates and methods of use |
| WO2013177046A1 (en) | 2012-05-21 | 2013-11-28 | Solulink, Inc. | Methods and/or use of oligonucleotide conjugates for suppressing background due to cross-hybridization |
| EP3901280B1 (en) | 2012-10-17 | 2025-03-12 | 10x Genomics Sweden AB | Methods and product for optimising localised or spatial detection of gene expression in a tissue sample |
| CA3153763A1 (en) * | 2013-03-11 | 2014-10-09 | Meso Scale Technologies, Llc. | Improved methods for conducting multiplexed assays |
| AU2014230945B2 (en) * | 2013-03-12 | 2019-07-11 | Ventana Medical Systems, Inc. | Proximity assay for in situ detection of targets |
| CN105358984B (zh) | 2013-03-15 | 2020-02-18 | 普罗格诺西斯生物科学公司 | 用于检测肽/mhc/tcr结合的方法 |
| LT3013983T (lt) | 2013-06-25 | 2023-05-10 | Prognosys Biosciences, Inc. | Erdviniai koduoti biologiniai tyrimai, naudojant mikrofluidinį įrenginį |
| US10288608B2 (en) * | 2013-11-08 | 2019-05-14 | Prognosys Biosciences, Inc. | Polynucleotide conjugates and methods for analyte detection |
| CA2976005A1 (en) | 2015-02-06 | 2016-08-11 | Cell Idx, Inc. | Antigen-coupled immunoreagents |
| HK1250245A1 (zh) | 2015-04-10 | 2018-12-07 | Spatial Transcriptomics Ab | 生物样本的空间区别、多重核酸分析 |
| JP6987641B2 (ja) | 2015-05-12 | 2022-01-05 | ブリンクバイオ インコーポレイテッド | シリコン系薬物複合体及びその使用方法 |
| WO2017040349A1 (en) | 2015-08-28 | 2017-03-09 | Ventana Medical Systems, Inc. | Protein proximity assay in formalin fixed paffafin embedded tissue using caged haptens |
| CN109475567A (zh) | 2016-06-09 | 2019-03-15 | 布兰克生物股份有限公司 | 基于硅烷醇的治疗有效载荷 |
| WO2018208755A1 (en) * | 2017-05-09 | 2018-11-15 | The Regents Of The University Of California | Compositions and methods for tagging target proteins in proximity to a nucleotide sequence of interest |
| WO2019152391A1 (en) * | 2018-01-30 | 2019-08-08 | Rush University Medical Center | Sequential staining for multiplex analyses of tissues and cells |
| JP7528087B2 (ja) * | 2018-12-28 | 2024-08-05 | ベクトン・ディキンソン・アンド・カンパニー | サンプルの蛍光物質をスペクトル的に分解する方法及びシステム |
| US11926867B2 (en) | 2019-01-06 | 2024-03-12 | 10X Genomics, Inc. | Generating capture probes for spatial analysis |
| US11649485B2 (en) | 2019-01-06 | 2023-05-16 | 10X Genomics, Inc. | Generating capture probes for spatial analysis |
| CN110082524B (zh) * | 2019-04-29 | 2022-06-14 | 上海大学 | 检测脂多糖用荧光传感器、其制备方法和应用 |
| US12110541B2 (en) | 2020-02-03 | 2024-10-08 | 10X Genomics, Inc. | Methods for preparing high-resolution spatial arrays |
| US11768175B1 (en) | 2020-03-04 | 2023-09-26 | 10X Genomics, Inc. | Electrophoretic methods for spatial analysis |
Family Cites Families (10)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| DK1423400T4 (da) * | 2001-03-19 | 2013-09-02 | Harvard College | Evolution af hidtil ukendt molekylfunktion |
| EP1540013B1 (en) * | 2002-08-19 | 2015-07-08 | The President and Fellows of Harvard College | Evolving new molecular function |
| US7662554B2 (en) * | 2002-10-09 | 2010-02-16 | The Trustees Of Boston University | Nucleic acid supported protein complementation |
| US8017323B2 (en) * | 2003-03-26 | 2011-09-13 | President And Fellows Of Harvard College | Free reactant use in nucleic acid-templated synthesis |
| JP2008541698A (ja) * | 2005-05-03 | 2008-11-27 | アンサンブル ディスカバリー コーポレイション | 核酸検出のためのターンオーバープローブおよびその使用 |
| CA2610027A1 (en) * | 2005-05-26 | 2006-11-30 | Ensemble Discovery Corporation | Biodetection by nucleic acid-templated chemistry |
| US7795009B2 (en) * | 2005-06-15 | 2010-09-14 | Saint Louis University | Three-component biosensors for detecting macromolecules and other analytes |
| WO2007024029A1 (en) * | 2005-08-26 | 2007-03-01 | Kyoto University | Antiviral agent and viral replication inhibitor |
| US20100159455A1 (en) * | 2006-09-18 | 2010-06-24 | Ensemble Discovery | Receptor family profiling |
| EP2066813A2 (en) * | 2006-09-28 | 2009-06-10 | Ensemble Discovery Corporation | Compositions and methods for biodetection by nucleic acid-templated chemistry |
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2008
- 2008-07-21 WO PCT/US2008/070643 patent/WO2009018003A2/en not_active Ceased
- 2008-07-21 EP EP08796373A patent/EP2191268A2/en not_active Withdrawn
- 2008-07-21 CN CN2008801092681A patent/CN101952719A/zh active Pending
- 2008-07-21 CA CA2730565A patent/CA2730565A1/en not_active Abandoned
- 2008-07-21 AU AU2008282557A patent/AU2008282557A1/en not_active Abandoned
- 2008-07-21 JP JP2010518318A patent/JP2010534836A/ja not_active Withdrawn
- 2008-07-21 US US12/176,798 patent/US20100159446A1/en not_active Abandoned
Also Published As
| Publication number | Publication date |
|---|---|
| WO2009018003A3 (en) | 2009-07-16 |
| CN101952719A (zh) | 2011-01-19 |
| JP2010534836A (ja) | 2010-11-11 |
| AU2008282557A1 (en) | 2009-02-05 |
| US20100159446A1 (en) | 2010-06-24 |
| EP2191268A2 (en) | 2010-06-02 |
| WO2009018003A2 (en) | 2009-02-05 |
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Legal Events
| Date | Code | Title | Description |
|---|---|---|---|
| FZDE | Discontinued |
Effective date: 20130723 |