CA2519702A1 - Method and kit for the specific detection of m.tuberculosis - Google Patents
Method and kit for the specific detection of m.tuberculosis Download PDFInfo
- Publication number
- CA2519702A1 CA2519702A1 CA002519702A CA2519702A CA2519702A1 CA 2519702 A1 CA2519702 A1 CA 2519702A1 CA 002519702 A CA002519702 A CA 002519702A CA 2519702 A CA2519702 A CA 2519702A CA 2519702 A1 CA2519702 A1 CA 2519702A1
- Authority
- CA
- Canada
- Prior art keywords
- seq
- tuberculosis
- pair
- sequence
- hybridisation
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Abandoned
Links
- 201000008827 tuberculosis Diseases 0.000 title claims abstract description 107
- 238000000034 method Methods 0.000 title claims abstract description 56
- 238000011895 specific detection Methods 0.000 title claims abstract description 26
- 241000186366 Mycobacterium bovis Species 0.000 claims abstract description 20
- 241001467552 Mycobacterium bovis BCG Species 0.000 claims abstract description 11
- 241001467553 Mycobacterium africanum Species 0.000 claims abstract description 9
- 239000012472 biological sample Substances 0.000 claims abstract description 6
- 241000187919 Mycobacterium microti Species 0.000 claims abstract description 3
- 239000000523 sample Substances 0.000 claims description 131
- 238000009396 hybridization Methods 0.000 claims description 103
- 108020004414 DNA Proteins 0.000 claims description 72
- 230000000295 complement effect Effects 0.000 claims description 63
- 125000003729 nucleotide group Chemical group 0.000 claims description 60
- 239000002773 nucleotide Substances 0.000 claims description 58
- 238000003199 nucleic acid amplification method Methods 0.000 claims description 46
- 108090000913 Nitrate Reductases Proteins 0.000 claims description 44
- 230000003321 amplification Effects 0.000 claims description 43
- 239000012634 fragment Substances 0.000 claims description 40
- 108091028043 Nucleic acid sequence Proteins 0.000 claims description 33
- 238000001514 detection method Methods 0.000 claims description 31
- FWMNVWWHGCHHJJ-SKKKGAJSSA-N 4-amino-1-[(2r)-6-amino-2-[[(2r)-2-[[(2r)-2-[[(2r)-2-amino-3-phenylpropanoyl]amino]-3-phenylpropanoyl]amino]-4-methylpentanoyl]amino]hexanoyl]piperidine-4-carboxylic acid Chemical compound C([C@H](C(=O)N[C@H](CC(C)C)C(=O)N[C@H](CCCCN)C(=O)N1CCC(N)(CC1)C(O)=O)NC(=O)[C@H](N)CC=1C=CC=CC=1)C1=CC=CC=C1 FWMNVWWHGCHHJJ-SKKKGAJSSA-N 0.000 claims description 24
- 238000003752 polymerase chain reaction Methods 0.000 claims description 23
- 108091081024 Start codon Proteins 0.000 claims description 20
- 238000013519 translation Methods 0.000 claims description 20
- 238000011144 upstream manufacturing Methods 0.000 claims description 20
- 108700039691 Genetic Promoter Regions Proteins 0.000 claims description 16
- 238000002866 fluorescence resonance energy transfer Methods 0.000 claims description 16
- 150000007523 nucleic acids Chemical class 0.000 claims description 16
- 108091034117 Oligonucleotide Proteins 0.000 claims description 14
- 208000015181 infectious disease Diseases 0.000 claims description 12
- 239000012568 clinical material Substances 0.000 claims description 11
- 108020004707 nucleic acids Proteins 0.000 claims description 10
- 102000039446 nucleic acids Human genes 0.000 claims description 10
- 238000006243 chemical reaction Methods 0.000 claims description 8
- 238000001574 biopsy Methods 0.000 claims description 7
- 210000003608 fece Anatomy 0.000 claims description 7
- 238000011880 melting curve analysis Methods 0.000 claims description 7
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- 210000003296 saliva Anatomy 0.000 claims description 7
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- 239000008280 blood Substances 0.000 claims description 6
- 210000001185 bone marrow Anatomy 0.000 claims description 6
- 210000004051 gastric juice Anatomy 0.000 claims description 6
- 241000187479 Mycobacterium tuberculosis Species 0.000 claims description 5
- 239000012752 auxiliary agent Substances 0.000 claims description 2
- 239000003153 chemical reaction reagent Substances 0.000 claims description 2
- 238000000605 extraction Methods 0.000 claims 1
- 238000001917 fluorescence detection Methods 0.000 claims 1
- 241001302239 Mycobacterium tuberculosis complex Species 0.000 abstract description 27
- 241001467578 Microbacterium Species 0.000 abstract 4
- 241001314546 Microtis <orchid> Species 0.000 abstract 1
- 244000052769 pathogen Species 0.000 description 29
- 230000001717 pathogenic effect Effects 0.000 description 18
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- 238000012360 testing method Methods 0.000 description 13
- 239000000975 dye Substances 0.000 description 6
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- 238000003745 diagnosis Methods 0.000 description 4
- 239000000203 mixture Substances 0.000 description 4
- PYWVYCXTNDRMGF-UHFFFAOYSA-N rhodamine B Chemical class [Cl-].C=12C=CC(=[N+](CC)CC)C=C2OC2=CC(N(CC)CC)=CC=C2C=1C1=CC=CC=C1C(O)=O PYWVYCXTNDRMGF-UHFFFAOYSA-N 0.000 description 4
- 241000894007 species Species 0.000 description 4
- 241000186359 Mycobacterium Species 0.000 description 3
- 206010044756 Tuberculous infections Diseases 0.000 description 3
- 238000009825 accumulation Methods 0.000 description 3
- 239000002253 acid Substances 0.000 description 3
- 238000004458 analytical method Methods 0.000 description 3
- 230000000692 anti-sense effect Effects 0.000 description 3
- 238000007834 ligase chain reaction Methods 0.000 description 3
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- 239000000463 material Substances 0.000 description 3
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- 229910002651 NO3 Inorganic materials 0.000 description 2
- NHNBFGGVMKEFGY-UHFFFAOYSA-N Nitrate Chemical compound [O-][N+]([O-])=O NHNBFGGVMKEFGY-UHFFFAOYSA-N 0.000 description 2
- 108020005187 Oligonucleotide Probes Proteins 0.000 description 2
- 238000012408 PCR amplification Methods 0.000 description 2
- 230000008901 benefit Effects 0.000 description 2
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- OPTASPLRGRRNAP-UHFFFAOYSA-N cytosine Chemical compound NC=1C=CNC(=O)N=1 OPTASPLRGRRNAP-UHFFFAOYSA-N 0.000 description 2
- 238000013461 design Methods 0.000 description 2
- 230000000694 effects Effects 0.000 description 2
- GNBHRKFJIUUOQI-UHFFFAOYSA-N fluorescein Chemical compound O1C(=O)C2=CC=CC=C2C21C1=CC=C(O)C=C1OC1=CC(O)=CC=C21 GNBHRKFJIUUOQI-UHFFFAOYSA-N 0.000 description 2
- 230000002458 infectious effect Effects 0.000 description 2
- 238000005259 measurement Methods 0.000 description 2
- 230000035772 mutation Effects 0.000 description 2
- -1 naphtyl amide Chemical class 0.000 description 2
- 239000002751 oligonucleotide probe Substances 0.000 description 2
- 238000011309 routine diagnosis Methods 0.000 description 2
- RWQNBRDOKXIBIV-UHFFFAOYSA-N thymine Chemical compound CC1=CNC(=O)NC1=O RWQNBRDOKXIBIV-UHFFFAOYSA-N 0.000 description 2
- 108091032973 (ribonucleotides)n+m Proteins 0.000 description 1
- 241000186361 Actinobacteria <class> Species 0.000 description 1
- 241000193830 Bacillus <bacterium> Species 0.000 description 1
- 241000894006 Bacteria Species 0.000 description 1
- 241000283690 Bos taurus Species 0.000 description 1
- 238000007399 DNA isolation Methods 0.000 description 1
- 238000001712 DNA sequencing Methods 0.000 description 1
- 241000329526 Guggenheimella bovis Species 0.000 description 1
- 241000588748 Klebsiella Species 0.000 description 1
- 241000186781 Listeria Species 0.000 description 1
- PVNIIMVLHYAWGP-UHFFFAOYSA-N Niacin Chemical compound OC(=O)C1=CC=CN=C1 PVNIIMVLHYAWGP-UHFFFAOYSA-N 0.000 description 1
- 241000588769 Proteus <enterobacteria> Species 0.000 description 1
- 241000589516 Pseudomonas Species 0.000 description 1
- 241000607142 Salmonella Species 0.000 description 1
- 241000607768 Shigella Species 0.000 description 1
- 241000191940 Staphylococcus Species 0.000 description 1
- 108010006785 Taq Polymerase Proteins 0.000 description 1
- 238000000137 annealing Methods 0.000 description 1
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- 230000002238 attenuated effect Effects 0.000 description 1
- 208000022362 bacterial infectious disease Diseases 0.000 description 1
- 238000010876 biochemical test Methods 0.000 description 1
- 239000000872 buffer Substances 0.000 description 1
- 239000007853 buffer solution Substances 0.000 description 1
- 244000309466 calf Species 0.000 description 1
- 238000004113 cell culture Methods 0.000 description 1
- 230000008859 change Effects 0.000 description 1
- 230000001427 coherent effect Effects 0.000 description 1
- 238000012505 colouration Methods 0.000 description 1
- 229940104302 cytosine Drugs 0.000 description 1
- 238000012217 deletion Methods 0.000 description 1
- 230000037430 deletion Effects 0.000 description 1
- 230000001419 dependent effect Effects 0.000 description 1
- 239000001004 diazonium dye Substances 0.000 description 1
- 201000010099 disease Diseases 0.000 description 1
- 208000037265 diseases, disorders, signs and symptoms Diseases 0.000 description 1
- 238000006073 displacement reaction Methods 0.000 description 1
- 238000001962 electrophoresis Methods 0.000 description 1
- 230000001747 exhibiting effect Effects 0.000 description 1
- 238000002189 fluorescence spectrum Methods 0.000 description 1
- 239000007850 fluorescent dye Substances 0.000 description 1
- 244000053095 fungal pathogen Species 0.000 description 1
- 238000001502 gel electrophoresis Methods 0.000 description 1
- 239000011521 glass Substances 0.000 description 1
- 239000011544 gradient gel Substances 0.000 description 1
- 238000002649 immunization Methods 0.000 description 1
- 230000006872 improvement Effects 0.000 description 1
- 238000011835 investigation Methods 0.000 description 1
- 210000001165 lymph node Anatomy 0.000 description 1
- 238000007403 mPCR Methods 0.000 description 1
- 239000000155 melt Substances 0.000 description 1
- 244000005700 microbiome Species 0.000 description 1
- 238000012986 modification Methods 0.000 description 1
- 230000004048 modification Effects 0.000 description 1
- 101150073102 narG gene Proteins 0.000 description 1
- 229960003512 nicotinic acid Drugs 0.000 description 1
- 235000001968 nicotinic acid Nutrition 0.000 description 1
- 239000011664 nicotinic acid Substances 0.000 description 1
- 125000003835 nucleoside group Chemical group 0.000 description 1
- 239000013610 patient sample Substances 0.000 description 1
- 238000002360 preparation method Methods 0.000 description 1
- 102000004169 proteins and genes Human genes 0.000 description 1
- 239000011535 reaction buffer Substances 0.000 description 1
- 230000009467 reduction Effects 0.000 description 1
- 230000001105 regulatory effect Effects 0.000 description 1
- 229920002477 rna polymer Polymers 0.000 description 1
- 238000012163 sequencing technique Methods 0.000 description 1
- 230000007480 spreading Effects 0.000 description 1
- 238000002560 therapeutic procedure Methods 0.000 description 1
- 229940113082 thymine Drugs 0.000 description 1
- 230000007704 transition Effects 0.000 description 1
- 235000011178 triphosphate Nutrition 0.000 description 1
- 239000001226 triphosphate Substances 0.000 description 1
- UNXRWKVEANCORM-UHFFFAOYSA-N triphosphoric acid Chemical compound OP(O)(=O)OP(O)(=O)OP(O)(O)=O UNXRWKVEANCORM-UHFFFAOYSA-N 0.000 description 1
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
- C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/156—Polymorphic or mutational markers
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Analytical Chemistry (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Organic Chemistry (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Microbiology (AREA)
- Immunology (AREA)
- Molecular Biology (AREA)
- Biotechnology (AREA)
- Biophysics (AREA)
- Physics & Mathematics (AREA)
- Biochemistry (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| DE10313791.2 | 2003-03-20 | ||
| DE10313791A DE10313791A1 (de) | 2003-03-20 | 2003-03-20 | Spezifischer Nachweis von Mykobakterien des M. tuberculosis-Komplex |
| PCT/EP2004/002911 WO2004083459A1 (de) | 2003-03-20 | 2004-03-19 | Verfahren und kit zum spezifischen nachweis von m. tuberculosis |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| CA2519702A1 true CA2519702A1 (en) | 2004-09-30 |
Family
ID=32946237
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| CA002519702A Abandoned CA2519702A1 (en) | 2003-03-20 | 2004-03-19 | Method and kit for the specific detection of m.tuberculosis |
Country Status (8)
| Country | Link |
|---|---|
| US (1) | US7749696B2 (enExample) |
| EP (1) | EP1606420B1 (enExample) |
| JP (1) | JP4599346B2 (enExample) |
| AT (1) | ATE518964T1 (enExample) |
| AU (1) | AU2004221678B2 (enExample) |
| CA (1) | CA2519702A1 (enExample) |
| DE (1) | DE10313791A1 (enExample) |
| WO (1) | WO2004083459A1 (enExample) |
Families Citing this family (5)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2009087688A2 (en) * | 2008-01-04 | 2009-07-16 | Premas Biotech Pvt.Ltd | Method for detection of nucleic acid of mycobacterium and uses thereof |
| US20090311677A1 (en) * | 2008-06-13 | 2009-12-17 | Andrew Reeves | Identification of contaminating bacteria in industrial ethanol fermentations |
| WO2014132263A1 (en) * | 2013-02-27 | 2014-09-04 | Council Of Scientific & Industrial Research | Nitrite-reductase (nirb) as potential anti-tubercular target and a method to detect the severity of tuberculosis disease |
| JP2021119751A (ja) * | 2020-01-30 | 2021-08-19 | 東洋紡株式会社 | 微生物の同定方法 |
| EP4547870A1 (en) * | 2022-06-30 | 2025-05-07 | Life Technologies Corporation | Methods for assessing genomic instability |
Family Cites Families (3)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US6294328B1 (en) * | 1998-06-24 | 2001-09-25 | The Institute For Genomic Research | DNA sequences for strain analysis in Mycobacterium tuberculosis |
| JP2002538835A (ja) * | 1999-03-16 | 2002-11-19 | シャッカート，ハンス，コンラート | 比較遺伝子解析による生物の同定方法および該方法を実施するためのプライマーおよびハイブリダイゼーションプローブ。 |
| US7247430B2 (en) | 2001-08-14 | 2007-07-24 | Institut Pasteur | Compositions and methods for detecting multidrug resistant strains of M. tuberculosis having mutations in genes of the mutT family |
-
2003
- 2003-03-20 DE DE10313791A patent/DE10313791A1/de not_active Withdrawn
-
2004
- 2004-03-19 US US10/549,495 patent/US7749696B2/en active Active
- 2004-03-19 EP EP04721892A patent/EP1606420B1/de not_active Expired - Lifetime
- 2004-03-19 CA CA002519702A patent/CA2519702A1/en not_active Abandoned
- 2004-03-19 WO PCT/EP2004/002911 patent/WO2004083459A1/de not_active Ceased
- 2004-03-19 JP JP2006504758A patent/JP4599346B2/ja not_active Expired - Lifetime
- 2004-03-19 AT AT04721892T patent/ATE518964T1/de active
- 2004-03-19 AU AU2004221678A patent/AU2004221678B2/en not_active Expired
Also Published As
| Publication number | Publication date |
|---|---|
| US20070015157A1 (en) | 2007-01-18 |
| JP4599346B2 (ja) | 2010-12-15 |
| EP1606420A1 (de) | 2005-12-21 |
| WO2004083459A1 (de) | 2004-09-30 |
| JP2006521797A (ja) | 2006-09-28 |
| ATE518964T1 (de) | 2011-08-15 |
| US7749696B2 (en) | 2010-07-06 |
| AU2004221678A1 (en) | 2004-09-30 |
| EP1606420B1 (de) | 2011-08-03 |
| DE10313791A1 (de) | 2004-10-07 |
| AU2004221678B2 (en) | 2009-04-23 |
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Legal Events
| Date | Code | Title | Description |
|---|---|---|---|
| EEER | Examination request | ||
| FZDE | Discontinued |