AU2015374309B2 - Methods for tagging DNA-encoded libraries - Google Patents

Methods for tagging DNA-encoded libraries Download PDF

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Publication number
AU2015374309B2
AU2015374309B2 AU2015374309A AU2015374309A AU2015374309B2 AU 2015374309 B2 AU2015374309 B2 AU 2015374309B2 AU 2015374309 A AU2015374309 A AU 2015374309A AU 2015374309 A AU2015374309 A AU 2015374309A AU 2015374309 B2 AU2015374309 B2 AU 2015374309B2
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AU
Australia
Prior art keywords
nucleotides
oligonucleotide
chemical
tag
library
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Ceased
Application number
AU2015374309A
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English (en)
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AU2015374309A1 (en
Inventor
Matthew Clark
Anthony D. Keefe
Alexander Litovchick
Richard W. Wagner
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
X Chem Inc
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X Chem Inc
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Filing date
Publication date
Application filed by X Chem Inc filed Critical X Chem Inc
Publication of AU2015374309A1 publication Critical patent/AU2015374309A1/en
Application granted granted Critical
Publication of AU2015374309B2 publication Critical patent/AU2015374309B2/en
Priority to AU2020230345A priority Critical patent/AU2020230345A1/en
Ceased legal-status Critical Current
Anticipated expiration legal-status Critical

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Classifications

    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07HSUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
    • C07H1/00Processes for the preparation of sugar derivatives
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07HSUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
    • C07H21/00Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids
    • C07H21/02Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids with ribosyl as saccharide radical
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/10Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1034Isolating an individual clone by screening libraries
    • C12N15/1065Preparation or screening of tagged libraries, e.g. tagged microorganisms by STM-mutagenesis, tagged polynucleotides, gene tags
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/10Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1034Isolating an individual clone by screening libraries
    • C12N15/1068Template (nucleic acid) mediated chemical library synthesis, e.g. chemical and enzymatical DNA-templated organic molecule synthesis, libraries prepared by non ribosomal polypeptide synthesis [NRPS], DNA/RNA-polymerase mediated polypeptide synthesis
    • CCHEMISTRY; METALLURGY
    • C40COMBINATORIAL TECHNOLOGY
    • C40BCOMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
    • C40B50/00Methods of creating libraries, e.g. combinatorial synthesis
    • C40B50/08Liquid phase synthesis, i.e. wherein all library building blocks are in liquid phase or in solution during library creation; Particular methods of cleavage from the liquid support
    • C40B50/10Liquid phase synthesis, i.e. wherein all library building blocks are in liquid phase or in solution during library creation; Particular methods of cleavage from the liquid support involving encoding steps

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  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Organic Chemistry (AREA)
  • Engineering & Computer Science (AREA)
  • Genetics & Genomics (AREA)
  • Biochemistry (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • General Health & Medical Sciences (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Wood Science & Technology (AREA)
  • General Engineering & Computer Science (AREA)
  • Zoology (AREA)
  • Biomedical Technology (AREA)
  • Crystallography & Structural Chemistry (AREA)
  • Microbiology (AREA)
  • Plant Pathology (AREA)
  • Physics & Mathematics (AREA)
  • Biophysics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Structural Engineering (AREA)
  • General Chemical & Material Sciences (AREA)
  • Medicinal Chemistry (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Saccharide Compounds (AREA)
  • Preparation Of Compounds By Using Micro-Organisms (AREA)
  • Nitrogen Condensed Heterocyclic Rings (AREA)
AU2015374309A 2014-12-30 2015-12-28 Methods for tagging DNA-encoded libraries Ceased AU2015374309B2 (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
AU2020230345A AU2020230345A1 (en) 2014-12-30 2020-09-11 Methods for tagging DNA-encoded libraries

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US201462098037P 2014-12-30 2014-12-30
US62/098,037 2014-12-30
PCT/US2015/067667 WO2016109423A1 (en) 2014-12-30 2015-12-28 Methods for tagging dna-encoded libraries

Related Child Applications (1)

Application Number Title Priority Date Filing Date
AU2020230345A Division AU2020230345A1 (en) 2014-12-30 2020-09-11 Methods for tagging DNA-encoded libraries

Publications (2)

Publication Number Publication Date
AU2015374309A1 AU2015374309A1 (en) 2017-07-27
AU2015374309B2 true AU2015374309B2 (en) 2020-06-11

Family

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Family Applications (2)

Application Number Title Priority Date Filing Date
AU2015374309A Ceased AU2015374309B2 (en) 2014-12-30 2015-12-28 Methods for tagging DNA-encoded libraries
AU2020230345A Withdrawn AU2020230345A1 (en) 2014-12-30 2020-09-11 Methods for tagging DNA-encoded libraries

Family Applications After (1)

Application Number Title Priority Date Filing Date
AU2020230345A Withdrawn AU2020230345A1 (en) 2014-12-30 2020-09-11 Methods for tagging DNA-encoded libraries

Country Status (15)

Country Link
US (1) US20180002688A1 (https=)
EP (1) EP3240795A4 (https=)
JP (1) JP6864621B2 (https=)
KR (1) KR20170094445A (https=)
CN (1) CN107428795B (https=)
AU (2) AU2015374309B2 (https=)
BR (1) BR112017013904A2 (https=)
CA (1) CA2972275A1 (https=)
EA (1) EA201791312A1 (https=)
HK (1) HK1246301A1 (https=)
IL (2) IL253154B (https=)
MA (1) MA41298A (https=)
MX (1) MX2017008772A (https=)
SG (1) SG11201705350XA (https=)
WO (1) WO2016109423A1 (https=)

Families Citing this family (10)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US11186836B2 (en) 2016-06-16 2021-11-30 Haystack Sciences Corporation Oligonucleotide directed and recorded combinatorial synthesis of encoded probe molecules
EA201992476A1 (ru) * 2017-04-18 2020-02-25 Икс-Чем, Инк. Способы идентификации соединений
EP3619340A4 (en) 2017-05-02 2021-01-20 Haystack Sciences Corporation OLIGONUCLEOTID-DRIVEN COMBINATORY SYNTHESIS VERIFICATION MOLECULES AND ASSOCIATED MANUFACTURING AND USE PROCESSES
US11384376B2 (en) * 2018-05-31 2022-07-12 Roche Molecular Systems, Inc. Reagents and methods for post-synthetic modification of nucleic acids
WO2020001560A1 (zh) * 2018-06-29 2020-01-02 成都先导药物开发股份有限公司 一种合成dna编码化合物中的反应监测方法
CN109468310B (zh) * 2018-10-25 2020-12-01 深圳劲宇生物科技有限公司 Dna编码碎片分子库的合成方法和连接基团的筛选方法
CA3131890A1 (en) * 2019-03-14 2020-09-17 Haystack Sciences Corporation Methods and systems for processing or analyzing oligonucleotide encoded molecules
CN112941634B (zh) * 2019-12-10 2023-09-26 成都先导药物开发股份有限公司 通过dna编码化合物库筛选同时结合多个生物靶标的化合物的方法
AU2021376394A1 (en) * 2020-11-06 2023-06-15 The University Of Chicago Hairpin oligonucleotides and uses thereof
WO2025053257A1 (ja) * 2023-09-07 2025-03-13 旭化成ファーマ株式会社 オリゴヌクレオチドによりコード化された化合物の製造方法、およびその応用

Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2013036810A1 (en) * 2011-09-07 2013-03-14 X-Chem, Inc. Methods for tagging dna-encoded libraries
WO2014012010A1 (en) * 2012-07-13 2014-01-16 X-Chem, Inc. Dna-encoded libraries having encoding oligonucleotide linkages not readable by polymerases

Family Cites Families (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1996038726A1 (en) * 1995-05-30 1996-12-05 Ecole Polytechnique Federale De Lausanne (Epfl) Covalently immobilized phospholipid bilayers on solid surfaces
PT2348125T (pt) * 2002-10-30 2017-08-29 Nuevolution As Método para a síntese de um complexo bifuncional
CN1898257B (zh) * 2003-12-17 2010-06-23 普雷西斯药品公司 合成编码文库的方法
US8846883B2 (en) * 2011-08-16 2014-09-30 University Of Southhampton Oligonucleotide ligation

Patent Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2013036810A1 (en) * 2011-09-07 2013-03-14 X-Chem, Inc. Methods for tagging dna-encoded libraries
WO2014012010A1 (en) * 2012-07-13 2014-01-16 X-Chem, Inc. Dna-encoded libraries having encoding oligonucleotide linkages not readable by polymerases

Also Published As

Publication number Publication date
CN107428795B (zh) 2021-06-18
AU2015374309A1 (en) 2017-07-27
EA201791312A1 (ru) 2017-10-31
MX2017008772A (es) 2018-03-15
JP2018501796A (ja) 2018-01-25
IL253154B (en) 2020-10-29
CN107428795A (zh) 2017-12-01
IL278117A (en) 2020-11-30
WO2016109423A1 (en) 2016-07-07
HK1246301A1 (zh) 2018-09-07
EP3240795A4 (en) 2019-02-13
BR112017013904A2 (pt) 2018-01-02
JP6864621B2 (ja) 2021-04-28
IL253154A0 (en) 2017-08-31
US20180002688A1 (en) 2018-01-04
SG11201705350XA (en) 2017-08-30
EP3240795A1 (en) 2017-11-08
MA41298A (fr) 2017-11-07
CA2972275A1 (en) 2016-07-07
AU2020230345A1 (en) 2020-10-01
KR20170094445A (ko) 2017-08-17
WO2016109423A8 (en) 2017-07-20

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MK14 Patent ceased section 143(a) (annual fees not paid) or expired