AU2008282862B2 - Molecular redundant sequencing - Google Patents
Molecular redundant sequencing Download PDFInfo
- Publication number
- AU2008282862B2 AU2008282862B2 AU2008282862A AU2008282862A AU2008282862B2 AU 2008282862 B2 AU2008282862 B2 AU 2008282862B2 AU 2008282862 A AU2008282862 A AU 2008282862A AU 2008282862 A AU2008282862 A AU 2008282862A AU 2008282862 B2 AU2008282862 B2 AU 2008282862B2
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- sequence
- nucleic acid
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- Ceased
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- 238000012163 sequencing technique Methods 0.000 title claims description 100
- 238000000034 method Methods 0.000 claims abstract description 102
- 150000007523 nucleic acids Chemical class 0.000 claims abstract description 89
- 108020004707 nucleic acids Proteins 0.000 claims abstract description 72
- 102000039446 nucleic acids Human genes 0.000 claims abstract description 72
- 108091028043 Nucleic acid sequence Proteins 0.000 claims abstract description 20
- 238000010348 incorporation Methods 0.000 claims abstract description 17
- 239000000203 mixture Substances 0.000 claims abstract description 16
- 230000001419 dependent effect Effects 0.000 claims abstract description 4
- 230000001404 mediated effect Effects 0.000 claims abstract 4
- 125000003729 nucleotide group Chemical group 0.000 claims description 59
- 239000002773 nucleotide Substances 0.000 claims description 52
- 238000006243 chemical reaction Methods 0.000 claims description 29
- 108091035707 Consensus sequence Proteins 0.000 claims description 11
- 230000000295 complement effect Effects 0.000 claims description 6
- 239000003550 marker Substances 0.000 claims description 4
- 238000001668 nucleic acid synthesis Methods 0.000 claims description 4
- 238000005096 rolling process Methods 0.000 claims description 3
- 230000003321 amplification Effects 0.000 claims description 2
- 238000003199 nucleic acid amplification method Methods 0.000 claims description 2
- 230000010076 replication Effects 0.000 claims description 2
- 238000007480 sanger sequencing Methods 0.000 claims 1
- 239000012634 fragment Substances 0.000 description 21
- 239000000975 dye Substances 0.000 description 6
- 108090000623 proteins and genes Proteins 0.000 description 6
- 102000004169 proteins and genes Human genes 0.000 description 5
- 238000012300 Sequence Analysis Methods 0.000 description 4
- 238000004458 analytical method Methods 0.000 description 4
- 239000000758 substrate Substances 0.000 description 4
- 108090000790 Enzymes Proteins 0.000 description 3
- 102000004190 Enzymes Human genes 0.000 description 3
- 230000015572 biosynthetic process Effects 0.000 description 3
- 238000005253 cladding Methods 0.000 description 3
- 238000012790 confirmation Methods 0.000 description 3
- 238000012252 genetic analysis Methods 0.000 description 3
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- 238000002360 preparation method Methods 0.000 description 3
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- 238000003786 synthesis reaction Methods 0.000 description 3
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- 108091081062 Repeated sequence (DNA) Proteins 0.000 description 2
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- 238000003776 cleavage reaction Methods 0.000 description 2
- 230000001066 destructive effect Effects 0.000 description 2
- 238000001514 detection method Methods 0.000 description 2
- 238000006073 displacement reaction Methods 0.000 description 2
- 238000010494 dissociation reaction Methods 0.000 description 2
- 230000005593 dissociations Effects 0.000 description 2
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- 150000003839 salts Chemical class 0.000 description 2
- 230000007017 scission Effects 0.000 description 2
- 108020004705 Codon Proteins 0.000 description 1
- 108060002716 Exonuclease Proteins 0.000 description 1
- 108091092195 Intron Proteins 0.000 description 1
- 102000003960 Ligases Human genes 0.000 description 1
- 108090000364 Ligases Proteins 0.000 description 1
- 241000282320 Panthera leo Species 0.000 description 1
- 229920000388 Polyphosphate Polymers 0.000 description 1
- 238000003491 array Methods 0.000 description 1
- 230000000903 blocking effect Effects 0.000 description 1
- 239000006227 byproduct Substances 0.000 description 1
- 239000007795 chemical reaction product Substances 0.000 description 1
- 230000009918 complex formation Effects 0.000 description 1
- 230000000536 complexating effect Effects 0.000 description 1
- 230000002596 correlated effect Effects 0.000 description 1
- 238000013461 design Methods 0.000 description 1
- 230000029087 digestion Effects 0.000 description 1
- 230000001079 digestive effect Effects 0.000 description 1
- XPPKVPWEQAFLFU-UHFFFAOYSA-J diphosphate(4-) Chemical compound [O-]P([O-])(=O)OP([O-])([O-])=O XPPKVPWEQAFLFU-UHFFFAOYSA-J 0.000 description 1
- 235000011180 diphosphates Nutrition 0.000 description 1
- 238000005516 engineering process Methods 0.000 description 1
- 230000002708 enhancing effect Effects 0.000 description 1
- 230000002255 enzymatic effect Effects 0.000 description 1
- 230000007717 exclusion Effects 0.000 description 1
- 102000013165 exonuclease Human genes 0.000 description 1
- 239000007850 fluorescent dye Substances 0.000 description 1
- 108091008053 gene clusters Proteins 0.000 description 1
- 230000007614 genetic variation Effects 0.000 description 1
- 238000009396 hybridization Methods 0.000 description 1
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- 101800002712 p27 Proteins 0.000 description 1
- 238000006116 polymerization reaction Methods 0.000 description 1
- 239000001205 polyphosphate Substances 0.000 description 1
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- 230000003362 replicative effect Effects 0.000 description 1
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Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
Landscapes
- Life Sciences & Earth Sciences (AREA)
- Chemical & Material Sciences (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Organic Chemistry (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Microbiology (AREA)
- Immunology (AREA)
- Biotechnology (AREA)
- Molecular Biology (AREA)
- Biophysics (AREA)
- Analytical Chemistry (AREA)
- Physics & Mathematics (AREA)
- Biochemistry (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US96203607P | 2007-07-26 | 2007-07-26 | |
| US60/962,036 | 2007-07-26 | ||
| PCT/US2008/009064 WO2009017678A2 (en) | 2007-07-26 | 2008-07-25 | Molecular redundant sequencing |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| AU2008282862A1 AU2008282862A1 (en) | 2009-02-05 |
| AU2008282862B2 true AU2008282862B2 (en) | 2014-07-31 |
Family
ID=40295742
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| AU2008282862A Ceased AU2008282862B2 (en) | 2007-07-26 | 2008-07-25 | Molecular redundant sequencing |
Country Status (7)
| Country | Link |
|---|---|
| US (4) | US7901889B2 (enExample) |
| EP (1) | EP2183388A4 (enExample) |
| JP (1) | JP2010534474A (enExample) |
| CN (1) | CN101802220B (enExample) |
| AU (1) | AU2008282862B2 (enExample) |
| CA (1) | CA2693979A1 (enExample) |
| WO (1) | WO2009017678A2 (enExample) |
Families Citing this family (126)
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| US8143030B2 (en) | 2008-09-24 | 2012-03-27 | Pacific Biosciences Of California, Inc. | Intermittent detection during analytical reactions |
| CA2720046C (en) * | 2008-03-31 | 2018-07-24 | Pacific Biosciences Of California, Inc. | Generation of modified polymerases for improved accuracy in single molecule sequencing |
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| US8921046B2 (en) * | 2008-09-19 | 2014-12-30 | Pacific Biosciences Of California, Inc. | Nucleic acid sequence analysis |
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Also Published As
| Publication number | Publication date |
|---|---|
| US9732383B2 (en) | 2017-08-15 |
| EP2183388A2 (en) | 2010-05-12 |
| EP2183388A4 (en) | 2010-09-08 |
| CN101802220B (zh) | 2013-07-31 |
| CA2693979A1 (en) | 2009-02-05 |
| WO2009017678A2 (en) | 2009-02-05 |
| JP2010534474A (ja) | 2010-11-11 |
| US9051611B2 (en) | 2015-06-09 |
| US7901889B2 (en) | 2011-03-08 |
| AU2008282862A1 (en) | 2009-02-05 |
| US20110212436A1 (en) | 2011-09-01 |
| US8535882B2 (en) | 2013-09-17 |
| US20140017690A1 (en) | 2014-01-16 |
| CN101802220A (zh) | 2010-08-11 |
| US20090029385A1 (en) | 2009-01-29 |
| WO2009017678A3 (en) | 2009-04-16 |
| US20150376690A1 (en) | 2015-12-31 |
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