AU2008282862B2 - Molecular redundant sequencing - Google Patents

Molecular redundant sequencing Download PDF

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Publication number
AU2008282862B2
AU2008282862B2 AU2008282862A AU2008282862A AU2008282862B2 AU 2008282862 B2 AU2008282862 B2 AU 2008282862B2 AU 2008282862 A AU2008282862 A AU 2008282862A AU 2008282862 A AU2008282862 A AU 2008282862A AU 2008282862 B2 AU2008282862 B2 AU 2008282862B2
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AU
Australia
Prior art keywords
sequence
nucleic acid
template
acid molecule
registration
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AU2008282862A
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AU2008282862A1 (en
Inventor
Fred Christians
Stephen Turner
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Pacific Biosciences of California Inc
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Pacific Biosciences of California Inc
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    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869Methods for sequencing

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  • Life Sciences & Earth Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Organic Chemistry (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Immunology (AREA)
  • Biotechnology (AREA)
  • Molecular Biology (AREA)
  • Biophysics (AREA)
  • Analytical Chemistry (AREA)
  • Physics & Mathematics (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
AU2008282862A 2007-07-26 2008-07-25 Molecular redundant sequencing Ceased AU2008282862B2 (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US96203607P 2007-07-26 2007-07-26
US60/962,036 2007-07-26
PCT/US2008/009064 WO2009017678A2 (en) 2007-07-26 2008-07-25 Molecular redundant sequencing

Publications (2)

Publication Number Publication Date
AU2008282862A1 AU2008282862A1 (en) 2009-02-05
AU2008282862B2 true AU2008282862B2 (en) 2014-07-31

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AU2008282862A Ceased AU2008282862B2 (en) 2007-07-26 2008-07-25 Molecular redundant sequencing

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US (4) US7901889B2 (enExample)
EP (1) EP2183388A4 (enExample)
JP (1) JP2010534474A (enExample)
CN (1) CN101802220B (enExample)
AU (1) AU2008282862B2 (enExample)
CA (1) CA2693979A1 (enExample)
WO (1) WO2009017678A2 (enExample)

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US20150376690A1 (en) 2015-12-31
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