AU2007313472B2 - Population scale HLA-typing and uses thereof - Google Patents

Population scale HLA-typing and uses thereof Download PDF

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Publication number
AU2007313472B2
AU2007313472B2 AU2007313472A AU2007313472A AU2007313472B2 AU 2007313472 B2 AU2007313472 B2 AU 2007313472B2 AU 2007313472 A AU2007313472 A AU 2007313472A AU 2007313472 A AU2007313472 A AU 2007313472A AU 2007313472 B2 AU2007313472 B2 AU 2007313472B2
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AU
Australia
Prior art keywords
hla
dna
pcr
probes
lane
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Ceased
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AU2007313472A
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English (en)
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AU2007313472A1 (en
Inventor
Frederick H. Eggers
Michael E. Hogan
Krishna Jayaraman
Rahul Mitra
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Genomics USA Inc
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Genomics USA Inc
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Publication of AU2007313472A1 publication Critical patent/AU2007313472A1/en
Priority to AU2013273684A priority Critical patent/AU2013273684A1/en
Application granted granted Critical
Publication of AU2007313472B2 publication Critical patent/AU2007313472B2/en
Ceased legal-status Critical Current
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    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/10Processes for the isolation, preparation or purification of DNA or RNA
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813Hybridisation assays
    • C12Q1/6834Enzymatic or biochemical coupling of nucleic acids to a solid phase
    • C12Q1/6837Enzymatic or biochemical coupling of nucleic acids to a solid phase using probe arrays or probe chips
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07HSUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
    • C07H21/00Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids
    • C07H21/04Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids with deoxyribosyl as saccharide radical
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6881Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for tissue or cell typing, e.g. human leukocyte antigen [HLA] probes
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/156Polymorphic or mutational markers

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  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Wood Science & Technology (AREA)
  • Zoology (AREA)
  • Genetics & Genomics (AREA)
  • Molecular Biology (AREA)
  • Analytical Chemistry (AREA)
  • Immunology (AREA)
  • Biotechnology (AREA)
  • Biochemistry (AREA)
  • General Engineering & Computer Science (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Health & Medical Sciences (AREA)
  • Biophysics (AREA)
  • Microbiology (AREA)
  • Physics & Mathematics (AREA)
  • Cell Biology (AREA)
  • Biomedical Technology (AREA)
  • Plant Pathology (AREA)
  • Crystallography & Structural Chemistry (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
AU2007313472A 2006-02-27 2007-02-27 Population scale HLA-typing and uses thereof Ceased AU2007313472B2 (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
AU2013273684A AU2013273684A1 (en) 2006-02-27 2013-12-18 Population scale hla-typing and uses thereof

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US77707806P 2006-02-27 2006-02-27
US60/777,078 2006-02-27
PCT/US2007/005121 WO2008048355A2 (en) 2006-02-27 2007-02-27 Population scale hla-typing and uses thereof

Related Child Applications (1)

Application Number Title Priority Date Filing Date
AU2013273684A Division AU2013273684A1 (en) 2006-02-27 2013-12-18 Population scale hla-typing and uses thereof

Publications (2)

Publication Number Publication Date
AU2007313472A1 AU2007313472A1 (en) 2008-04-24
AU2007313472B2 true AU2007313472B2 (en) 2014-01-16

Family

ID=39314565

Family Applications (1)

Application Number Title Priority Date Filing Date
AU2007313472A Ceased AU2007313472B2 (en) 2006-02-27 2007-02-27 Population scale HLA-typing and uses thereof

Country Status (9)

Country Link
US (4) US7667026B2 (enExample)
EP (1) EP1991558B1 (enExample)
JP (1) JP2009528060A (enExample)
KR (1) KR20080100461A (enExample)
AU (1) AU2007313472B2 (enExample)
CA (1) CA2643771A1 (enExample)
NZ (2) NZ571513A (enExample)
SG (1) SG172644A1 (enExample)
WO (1) WO2008048355A2 (enExample)

Families Citing this family (17)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP1536021A1 (en) * 2003-11-27 2005-06-01 Consortium National de Recherche en Genomique (CNRG) Method for HLA typing
CA2643771A1 (en) * 2006-02-27 2008-04-24 Michael E. Hogan Population scale hla-typing and uses thereof
DE102009035286A1 (de) * 2009-07-30 2011-02-10 Siemens Aktiengesellschaft Verfahren und Vorrichtung zur Darstellung computertomographischer Untersuchungsdaten eines Untersuchungsobjektes
US8771951B2 (en) 2009-11-16 2014-07-08 Genomics Usa, Inc. Methods for PCR and HLA typing using raw blood
US8969254B2 (en) 2010-12-16 2015-03-03 Dana-Farber Cancer Institute, Inc. Oligonucleotide array for tissue typing
JP6233022B2 (ja) * 2011-12-28 2017-11-22 凸版印刷株式会社 Hla−a*24グループの判定方法
HUP1200622A2 (en) * 2012-10-30 2014-05-28 Budapesti Mueszaki Es Gazdasagtudomanyi Egyetem Method and computer program product for genotype classification
WO2014160046A1 (en) * 2013-03-14 2014-10-02 The Trustees Of The University Of Pennsylvania A method for detecting mutations in single cells or single molecules
EP2997037B1 (en) * 2013-05-14 2018-11-21 Genomics USA, Inc. Use of a composition for entrapping a protein on a surface
ES2791415T3 (es) * 2015-12-01 2020-11-04 Centro Nac De Investigaciones Cardiovasculares Carlos Iii F S P Método para diagnosticar miocardiopatías
US10612075B2 (en) * 2015-12-28 2020-04-07 PathogenDX Inc Microarray based multiplex pathogen analysis and uses thereof
US11542498B2 (en) * 2015-12-28 2023-01-03 Pathogendx, Inc. Microarray based multiplex pathogen analysis and uses thereof
KR102673550B1 (ko) * 2017-11-23 2024-06-12 (주)오상헬스케어 실시간 중합 효소 연쇄 반응을 이용한 hla 대립유전자 검사 키트
CN114423874A (zh) * 2019-07-05 2022-04-29 英特莱克森有限责任公司 个体hla分型的确定方法及其作为预测因子、靶基因和治疗剂的用途
KR102511162B1 (ko) * 2021-11-01 2023-03-20 대한민국 한국인 특이적 snp 정보 및 최적화된 파이프라인을 이용한 hla-drb1 유전자형 분석 방법
KR102511161B1 (ko) * 2021-11-01 2023-03-20 대한민국 한국인 특이적 snp 정보 및 최적화된 파이프라인을 이용한 hla-a 유전자형 분석 방법
KR102543976B1 (ko) * 2021-11-01 2023-06-15 대한민국 한국인 특이적 snp 정보 및 최적화된 파이프라인을 이용한 hla-b 유전자형 분석 방법

Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2000061795A2 (en) * 1999-04-09 2000-10-19 Innogenetics N.V. Method for the amplification of hla class i alleles
WO2000079006A1 (en) * 1999-06-17 2000-12-28 Fred Hutchinson Cancer Research Center Oligonucleotide arrays for high resolution hla typing
WO2005042764A2 (en) * 2003-10-28 2005-05-12 Dynal Biotech Llc Primers, methods and kits for amplifying or detecting human leukocyte antigen alleles
US20050260662A1 (en) * 2004-05-20 2005-11-24 Jiacheng Yang Genotyping of multiple loci with PCR for different loci amplification at different temperatures

Family Cites Families (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US4582788A (en) * 1982-01-22 1986-04-15 Cetus Corporation HLA typing method and cDNA probes used therein
US5567809A (en) * 1986-03-13 1996-10-22 Hoffmann-La Roche Inc. Methods and reagents for HLA DRbeta DNA typing
AU6657996A (en) * 1995-07-18 1997-02-18 Guido Krupp Ribozymes for the selective inhibition of expression by mhc llele genes, and drugs containing such ribozymes
WO2000031295A1 (en) * 1998-11-26 2000-06-02 Shionogi & Co., Ltd. Method for distinguishing hla class i allele type
AU6093300A (en) * 1999-07-14 2001-02-05 Genometrix Genomics Incorporated Arrays comprising non-covalently associated nucleic acid probes and methods for making and using them
US6670124B1 (en) * 1999-12-20 2003-12-30 Stemcyte, Inc. High throughput methods of HLA typing
CA2643771A1 (en) * 2006-02-27 2008-04-24 Michael E. Hogan Population scale hla-typing and uses thereof

Patent Citations (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2000061795A2 (en) * 1999-04-09 2000-10-19 Innogenetics N.V. Method for the amplification of hla class i alleles
US20020197613A1 (en) * 1999-04-09 2002-12-26 Canck Ilse De Method for the amplification of HLA class I alleles
WO2000079006A1 (en) * 1999-06-17 2000-12-28 Fred Hutchinson Cancer Research Center Oligonucleotide arrays for high resolution hla typing
WO2005042764A2 (en) * 2003-10-28 2005-05-12 Dynal Biotech Llc Primers, methods and kits for amplifying or detecting human leukocyte antigen alleles
US20050260662A1 (en) * 2004-05-20 2005-11-24 Jiacheng Yang Genotyping of multiple loci with PCR for different loci amplification at different temperatures

Also Published As

Publication number Publication date
WO2008048355A3 (en) 2008-11-13
EP1991558B1 (en) 2015-11-18
CA2643771A1 (en) 2008-04-24
JP2009528060A (ja) 2009-08-06
WO2008048355A2 (en) 2008-04-24
US20070298425A1 (en) 2007-12-27
SG172644A1 (en) 2011-07-28
NZ597200A (en) 2013-06-28
US8575325B2 (en) 2013-11-05
US7667026B2 (en) 2010-02-23
US8183360B2 (en) 2012-05-22
EP1991558A4 (en) 2009-11-04
US20100279889A1 (en) 2010-11-04
US20140135231A1 (en) 2014-05-15
AU2007313472A1 (en) 2008-04-24
KR20080100461A (ko) 2008-11-18
EP1991558A2 (en) 2008-11-19
NZ571513A (en) 2012-02-24
US20120302457A1 (en) 2012-11-29

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