AU2006347573B2 - Synthetic genomes - Google Patents

Synthetic genomes Download PDF

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Publication number
AU2006347573B2
AU2006347573B2 AU2006347573A AU2006347573A AU2006347573B2 AU 2006347573 B2 AU2006347573 B2 AU 2006347573B2 AU 2006347573 A AU2006347573 A AU 2006347573A AU 2006347573 A AU2006347573 A AU 2006347573A AU 2006347573 B2 AU2006347573 B2 AU 2006347573B2
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AU
Australia
Prior art keywords
genome
synthetic
cassettes
cell
nucleic acid
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Active
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AU2006347573A
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English (en)
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AU2006347573A1 (en
Inventor
Daniel G. Gibson
Clyde A. Hutchison Iii
Hamilton O. Smith
Craig J. Venter
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Viridos Inc
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Synthetic Genomics Inc
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    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1034—Isolating an individual clone by screening libraries
    • C12N15/1093—General methods of preparing gene libraries, not provided for in other subgroups
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/66—General methods for inserting a gene into a vector to form a recombinant vector using cleavage and ligation; Use of non-functional linkers or adaptors, e.g. linkers containing the sequence for a restriction endonuclease

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  • Genetics & Genomics (AREA)
  • Health & Medical Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Chemical & Material Sciences (AREA)
  • Organic Chemistry (AREA)
  • Wood Science & Technology (AREA)
  • Biomedical Technology (AREA)
  • Biotechnology (AREA)
  • General Engineering & Computer Science (AREA)
  • Zoology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Molecular Biology (AREA)
  • Microbiology (AREA)
  • Plant Pathology (AREA)
  • Physics & Mathematics (AREA)
  • Biochemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • Biophysics (AREA)
  • Crystallography & Structural Chemistry (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Micro-Organisms Or Cultivation Processes Thereof (AREA)
  • Preparation Of Compounds By Using Micro-Organisms (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
AU2006347573A 2005-12-06 2006-12-06 Synthetic genomes Active AU2006347573B2 (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US74254205P 2005-12-06 2005-12-06
US60/742,542 2005-12-06
PCT/US2006/046803 WO2008024129A2 (en) 2005-12-06 2006-12-06 Synthetic genomes

Publications (2)

Publication Number Publication Date
AU2006347573A1 AU2006347573A1 (en) 2008-02-28
AU2006347573B2 true AU2006347573B2 (en) 2013-01-17

Family

ID=39107256

Family Applications (1)

Application Number Title Priority Date Filing Date
AU2006347573A Active AU2006347573B2 (en) 2005-12-06 2006-12-06 Synthetic genomes

Country Status (9)

Country Link
US (2) US10041060B2 (enExample)
EP (1) EP1968994B1 (enExample)
JP (1) JP5106412B2 (enExample)
CN (1) CN101501207B (enExample)
AU (1) AU2006347573B2 (enExample)
CA (1) CA2643356A1 (enExample)
DK (1) DK1968994T3 (enExample)
IL (1) IL192041A (enExample)
WO (1) WO2008024129A2 (enExample)

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DK2255013T3 (en) * 2008-02-15 2016-09-12 Synthetic Genomics Inc Methods for in vitro joining and combinatorial assembly of nucleic acid molecules.
US10093552B2 (en) 2008-02-22 2018-10-09 James Weifu Lee Photovoltaic panel-interfaced solar-greenhouse distillation systems
US9259662B2 (en) 2008-02-22 2016-02-16 James Weifu Lee Photovoltaic panel-interfaced solar-greenhouse distillation systems
AU2009217293B2 (en) * 2008-02-23 2014-11-20 James Weifu Lee Designer organisms for photobiological butanol production from carbon dioxide and water
US8986963B2 (en) * 2008-02-23 2015-03-24 James Weifu Lee Designer calvin-cycle-channeled production of butanol and related higher alcohols
CN102015995B (zh) 2008-03-03 2014-10-22 焦耳无限科技公司 产生碳基目的产物的二氧化碳固定工程微生物
EP2998402A1 (en) 2008-10-17 2016-03-23 Joule Unlimited Technologies, Inc. Ethanol production by microorganisms
EP3257942B1 (en) 2008-12-18 2020-07-22 ITI Scotland Limited Method for assembly of polynucleic acid sequences
US7794969B1 (en) 2009-07-09 2010-09-14 Joule Unlimited, Inc. Methods and compositions for the recombinant biosynthesis of n-alkanes
US20120077251A1 (en) 2010-09-14 2012-03-29 C/O Joule Unlimited Technologies, Inc. Methods and Compositions for Targeting Heterologous Integral Membrane Proteins to the Cyanobacterial Plasma Membrane
WO2011038134A1 (en) 2009-09-25 2011-03-31 Ls9, Inc. Production of fatty acid derivatives
US20110269119A1 (en) 2009-10-30 2011-11-03 Synthetic Genomics, Inc. Encoding text into nucleic acid sequences
MX2012005069A (es) * 2009-10-30 2012-07-17 Synthetic Genomics Inc Codificar texto hacia secuencias de acido nucleico.
CN102939380A (zh) * 2010-03-05 2013-02-20 合成基因组股份有限公司 用于克隆和操作基因组的方法
GB2481425A (en) 2010-06-23 2011-12-28 Iti Scotland Ltd Method and device for assembling polynucleic acid sequences
US8349587B2 (en) 2011-10-31 2013-01-08 Ginkgo Bioworks, Inc. Methods and systems for chemoautotrophic production of organic compounds
US8790901B2 (en) 2011-12-14 2014-07-29 Pronutria, Inc. Microorganisms and methods for producing unsaturated fatty acids
HK1206765A1 (en) 2012-03-26 2016-01-15 Axcella Health Inc. Nutritive fragments, proteins and methods
SG10201604464SA (en) 2012-03-26 2016-07-28 Axcella Health Inc Charged nutritive proteins and methods
HK1206764A1 (en) 2012-03-26 2016-01-15 Axcella Health Inc. Nutritive proteins and methods
EP2831102A4 (en) 2012-03-26 2015-12-02 Pronutria Inc NUTRITIONAL FRAGMENTS, PROTEINS THEREFOR AND METHOD
GB201219989D0 (en) 2012-11-06 2012-12-19 Discuva Ltd Bacterial engineering
WO2014089436A1 (en) 2012-12-07 2014-06-12 Ginkgo Bioworks, Inc. Methods and systems for methylotrophic production of organic compounds
US11408013B2 (en) 2013-07-19 2022-08-09 Cargill, Incorporated Microorganisms and methods for the production of fatty acids and fatty acid derived products
WO2015048334A2 (en) 2013-09-25 2015-04-02 Pronutria, Inc. Edible species nutritive polypeptides and methods of production and use thereof
WO2015048339A2 (en) 2013-09-25 2015-04-02 Pronutria, Inc. Compositions and formulations for non-human nutrition and methods of production and use thereof
WO2015054507A1 (en) 2013-10-10 2015-04-16 Pronutria, Inc. Nutritive polypeptide production systems, and methods of manufacture and use thereof
GB201413202D0 (en) 2014-07-25 2014-09-10 Discuva Ltd Process for producing bacterial mutants
EP3430133A1 (en) 2016-03-17 2019-01-23 INVISTA Textiles (U.K.) Limited Carboxylic acid reductase polypeptides and variants having improved activity, materials and processes relating thereto
US11085037B2 (en) * 2016-03-23 2021-08-10 Codex Dna, Inc. Generation of synthetic genomes
CN110494566A (zh) 2017-02-02 2019-11-22 嘉吉公司 产生c6-c10脂肪酸衍生物的经遗传修饰的细胞
EP3775182A1 (en) 2018-03-30 2021-02-17 INVISTA Textiles (U.K.) Limited Materials and methods for biosynthetic manufacture of pimelic acid and utilization of synthetic polypeptides
EP3775242A1 (en) 2018-03-30 2021-02-17 INVISTA Textiles (U.K.) Limited High hydrogen utilization and gas recycle
EP3775240A1 (en) 2018-03-30 2021-02-17 INVISTA Textiles (U.K.) Limited Method for controlling dissolved oxygen concentration in a continuous aerobic fermentation
US11512276B2 (en) 2018-03-30 2022-11-29 Inv Nylon Chemicals Americas, Llc Methods for controlling oxygen concentration during aerobic biosynthesis
WO2019213033A1 (en) 2018-05-02 2019-11-07 Invista North America S.A.R.L. Materials and methods for maximizing biosynthesis through alteration of pyruvate-acetyl-coa-tca balance in species of the genera ralstonia and cupriavidus and organisms related thereto
EP3788156A1 (en) 2018-05-02 2021-03-10 INVISTA Textiles (U.K.) Limited Methods for controlling limitation conditions in product biosynthesis for non-phb generating cupriavidus or ralstonia

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US20030087238A1 (en) * 1997-09-16 2003-05-08 Evans Glen A. Method for assembly of a polynucleotide encoding a target polypeptide

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US20030087238A1 (en) * 1997-09-16 2003-05-08 Evans Glen A. Method for assembly of a polynucleotide encoding a target polypeptide
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Also Published As

Publication number Publication date
EP1968994B1 (en) 2013-07-03
EP1968994A2 (en) 2008-09-17
IL192041A0 (en) 2008-12-29
CN101501207B (zh) 2014-03-12
WO2008024129A2 (en) 2008-02-28
US20070264688A1 (en) 2007-11-15
US10041060B2 (en) 2018-08-07
JP5106412B2 (ja) 2012-12-26
US20180340165A1 (en) 2018-11-29
JP2009518038A (ja) 2009-05-07
DK1968994T3 (da) 2013-09-30
CN101501207A (zh) 2009-08-05
CA2643356A1 (en) 2008-02-28
EP1968994A4 (en) 2009-04-08
WO2008024129A3 (en) 2008-10-09
AU2006347573A1 (en) 2008-02-28
IL192041A (en) 2013-08-29

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Legal Events

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DA3 Amendments made section 104

Free format text: THE NATURE OF THE AMENDMENT IS: AMEND THE INVENTORS TO ADD: HUTCHISON, CLYDE A. III AND GIBSON, DANIEL G.

PC1 Assignment before grant (sect. 113)

Owner name: SYNTHETIC GENOMICS, INC.

Free format text: FORMER APPLICANT(S): J. CRAIG VENTER INSTITUTE

FGA Letters patent sealed or granted (standard patent)