WO2022121928A1 - 抗egfr的纳米抗体及其用途 - Google Patents
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- C07K16/18—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
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- A61K45/06—Mixtures of active ingredients without chemical characterisation, e.g. antiphlogistics and cardiaca
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- C07K2317/20—Immunoglobulins specific features characterized by taxonomic origin
- C07K2317/24—Immunoglobulins specific features characterized by taxonomic origin containing regions, domains or residues from different species, e.g. chimeric, humanized or veneered
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- C07K2317/30—Immunoglobulins specific features characterized by aspects of specificity or valency
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- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/30—Immunoglobulins specific features characterized by aspects of specificity or valency
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/50—Immunoglobulins specific features characterized by immunoglobulin fragments
- C07K2317/56—Immunoglobulins specific features characterized by immunoglobulin fragments variable (Fv) region, i.e. VH and/or VL
- C07K2317/565—Complementarity determining region [CDR]
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/50—Immunoglobulins specific features characterized by immunoglobulin fragments
- C07K2317/56—Immunoglobulins specific features characterized by immunoglobulin fragments variable (Fv) region, i.e. VH and/or VL
- C07K2317/569—Single domain, e.g. dAb, sdAb, VHH, VNAR or nanobody®
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- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/90—Immunoglobulins specific features characterized by (pharmaco)kinetic aspects or by stability of the immunoglobulin
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Definitions
- the present invention relates to the fields of bioengineering and biomedicine, and mainly relates to a nanobody targeting EGFR or an antigen-binding fragment thereof, its encoding nucleic acid, expression vector and expression cell, preparation method, pharmaceutical composition, and their use in the treatment of diseases. Use, such as for the treatment of tumors.
- Epidermal growth factor receptor is a multifunctional glycoprotein widely distributed on the cell membrane of various tissues of the human body.
- the homologue of the gene is one of the four members of the HER/ErbB family, so it is also known as HER1 or ErbB-1.
- EGFR epidermal growth factor receptor
- Extracellular domain at the NH2 end, it is the ligand binding domain, with a total of 621 amino acid residues, consisting of four sub-regions I, II, III, and IV (or correspondingly referred to as L1, S1/CR1, L2, S2/CR2 subregions) constitute (Bishayee S., Role of conformational alteration in the epidermal growth factor receptor (EGFR) function. Biochem Pharmacol, 2000, 60(8): 1217-1223). Domains II and IV have high homology and are dimerization binding regions. Domain II is characterized by a ⁇ -hairpin or dimerization arm.
- the receptor extracellular domain is in its closed, inactive conformation in its equilibrium state, with the ⁇ -hairpin in domain II making intramolecular contacts with conserved residues in domain IV, preventing dimerization from forming.
- the orientation of domains I and III changes, resulting in exposure of the dimerization arms, allowing them to dimerize with other receptors.
- Transmembrane (TM) region a hydrophobic region composed of 23 amino acid residues, which is a single-chain alpha helix (Abe Y, Odaka M, Inagaki F, et al., Disulfide bond structure of human epidermal growth factor receptor.
- Intracellular domain a total of 542 amino acid residues, ICD can be divided into two parts: tyrosine kinase domain and C-terminal domain, the former has adenosine triphosphate (ATP) binding site, ATP After binding, the phosphate group can be transferred; the latter has multiple tyrosine residues, which can be phosphorylated and directly involved in intracellular signal transduction (Nam Y.Lee, Structure and dynamics of the epidermal growth factor receptor C-terminal phosphorylation domain. Protein Sci. 2006, 15(5):1142–1152).
- ATP adenosine triphosphate
- EGFR ligands include EGF, TGFA/TGF-alpha, amphiregulin, epigen/EPGN, BTC/betacellulin, epiregulin/EREG and HBEGF/heparin-binding EGF. Binding of receptor ligands will trigger EGFR to form homologous or heterodimers, resulting in autophosphorylation of the intracellular region and further activation of complex downstream signaling cascades, including the following signaling pathways: RAS-RAF -MEK-ERK signaling pathway, phosphatidylinositol 3-kinase (PI3K) signaling pathway, PLC gamma-PKC signaling pathway and STATs modules signaling pathway.
- RAS-RAF -MEK-ERK signaling pathway phosphatidylinositol 3-kinase (PI3K) signaling pathway
- PLC gamma-PKC signaling pathway and STATs modules signaling pathway.
- EGFR can regulate a variety of cellular physiological processes through these tyrosine kinase-mediated signal transduction pathways, including cell proliferation and differentiation, cell survival and apoptosis, angiogenesis, and cell mitosis and cell metastasis (Atalay et al. , Novel therapeutic strategies targeting the epidermal growth factor receptor(EGFR) family and its downstream effectors in breast cancer. Ann. Oncology, 2003, 14: 1346-1363; Herbst and Shin, Monoclone antibodies target epidermal growth factor receptor positive cancer therapy. American Cancer Society, 2000, 1593-1611; Modjtahedi et al., Phase I trial and tumor localisation of the anti-EGFR monoclonal antibody ICR62 in head and neck or lung cancer Br. J. Cancer, 1996, 73: 228-235,).
- EGFR can promote the transformation of normal cells and the metastasis of malignant tumors. Overexpression is often associated with gene amplification (Towia A. Libermann et al., Amplification, enhanced expression and possible rearrangement of EGF receptor gene in primary human brain tumors of glial origin, 1985, Nature 313:144-147). Rearrangement of the EGFR gene is evident in many tumors with gene amplification, resulting in the production of EGFR variants (Maiden et al, Selective Amplification of the Cytoplasmic Domain of the Epidermal Growth Factor, Receptor Gene in Glioblastoma Multiforme, 1988, Cancer Research 4 : 2711-2714).
- EGFRvI lacks most of the extracellular domain of EGFR
- EGFRvII consists of an in-frame deletion of 83 amino acids in the extracellular domain of EGFR
- EGFRvIII is composed of EGFR Consists of a 267 amino acid in-frame deletion in the extracellular domain
- EGFRvIV has a deletion in the cytoplasmic domain of EGFR
- EGFRvV has a deletion in the cytoplasmic domain of EGFR
- EGFR.TDM/2 -7 has repeats of exons 2-7 in the extracellular domain of EGFR
- EGFR.TDM/18-25 contains repeats of exons 18-26 in the tyrosine kinase domain of EGFR
- EGFR.TDM/18-26 contains repeats of exons 18-26 in the tyrosine kinase domain of EGFR (Kuan et al., EGF mutant receptor
- the mutant EGFRvIII is the most common variant of epidermal growth factor (EGF) receptor in human cancer, also known as de2-7 EGFR, ⁇ EGFR, or ⁇ 2-7 (Olapade-Olaopa EO, Moscatello DK, et al., Evidence for the differential expression of a variant EGF receptor protein in human prostate cancer, Br.J., 2000 Cancer.82(1):86-94).
- EGF epidermal growth factor
- EGFRvIII expression has been reported in a variety of tumor types, including glioma, breast, lung, ovarian, and prostate cancer (Wikstrand et al., cell surface localization and density of the tumor-associated variant of the epidermal growth factor receptor).
- EGFRvIII cannot bind to its ligand, but it is in a persistent low activation state.
- the mechanism of action of EGFRvIII in glioma is not completely clear, but according to existing reports, EGFRvIII can reduce the apoptosis of glioma cells and slightly increase the proliferation of glioma cells (M Nagane et al. al. A Common Mutant Epidermal Growth Factor Receptor Confers Enhanced Tumorigenicity on Human Glioblastoma Cells by Increasing Proliferation and Reducing Apoptosis. Cancer Res 1996, 56(21):5079-5086.).
- EGFRvIII is specifically expressed in tumor tissues, but not in normal tissues, so it is a highly specific target in antibody therapy (Henriqueta A C Silva et al. Molecular Detection of EGFRvIII-positive Cells in the Peripheral Blood of Breast Cancer Patients, Eur J Cancer. 2006, 42(15):2617-2622).
- Nanobodies are genetically engineered antibodies that contain only a single domain.
- Belgian scientist Hamers-Casterman C found a natural heavy chain antibody containing only heavy chain but no light chain in camel blood (Hamers-Casterman C, Atarhouch T, Muyldermans S, Robinson G, Hamers C, Songa EB, et al. al.Naturally occurring antibodies devoid of light chains.Nature.363(6428):446–8(1993).
- heavy chain antibodies lack the light chain, but still retain the ability to bind antigens.
- Nanobodies are not only 1/10 of the molecular weight of ordinary antibodies, but also have more flexible chemical properties, good stability, high solubility, easy expression, high tumor tissue penetration, and easy coupling to other molecules. Therefore, the application of nanobody technology to develop therapeutic antibodies against EGFR and EGFRvIII has broad prospects.
- the present invention provides Nanobodies or antigen-binding fragments that specifically bind to EGFR and EGFRvIII, nucleic acids encoding these antibodies and antigen-binding fragments, pharmaceutical compositions and kits comprising the antibodies and antigen-binding fragments, and their use in the treatment of tumors and other pharmaceutical preparations.
- a Nanobody or antigen-binding fragment that specifically binds EGFR and EGFRvIII
- the Nanobody or antigen-binding fragment comprises a combination of CDRs comprising: CDR1, CDR2 and CDR3; the CDR1, CDR2 and CDR3 has any sequence combination selected from the group consisting of or a sequence combination having 1, 2, 3 or more amino acid insertions, deletions and/or substitutions compared to said sequence combination:
- Each of CDR1, CDR2 and CDR3 is encoded according to the conventional analysis methods of KABAT, Chothia or IMGT; preferably, the substitutions are conservative amino acid substitutions.
- Nanobodies or antigen-binding fragments of the invention wherein:
- the CDR1, CDR2 and CDR3 are respectively shown in the sequence shown in SEQ ID NO.96, 97, 98;
- the CDR1, CDR2 and CDR3 are respectively as shown in SEQ ID NO.102, 103, 104 sequence;
- the CDR1, CDR2 and CDR3 are respectively as shown in SEQ ID NO.105, 106, 107 sequence;
- the CDR1, CDR2 and CDR3 are respectively as shown in SEQ ID NO.108, 109, 110 sequence;
- CDR1, CDR2 and CDR3 are respectively as shown in SEQ ID NO.153,154,155 sequence;
- CDR1, CDR2 and CDR3 are respectively shown as the sequence shown in SEQ ID NO.213,214,215;
- the CDR1, CDR2 and CDR3 are respectively as shown in SEQ ID NO.216, 217, 218 sequence;
- the CDR1, CDR2 and CDR3 are respectively the sequences shown in SEQ ID NO. 258, 259 and 260; A sequence combination of 1, 2, 3 or more amino acid insertions, deletions and/or substitutions; preferably substitutions, more preferably substitutions of conserved amino acid residues.
- the present invention provides an antibody or antigen-binding fragment thereof comprising:
- variable region has SEQ ID NO: 19, 21, 23, 25, 27, 29, 31, 33, 35, 37, 39, 41, 43, 45, 47, 49, 51, 53, 55, 57 , the sequence shown in 59 or 61;
- the framework region of the Nanobody or antigen-binding fragment is the same as SEQ ID NO: 19, 21, 23, 25, 27, 29, 31, 33, 35, 37, 39, 41, 43, 45, 47, 49 , 51, 53, 55, 57, 59 or 61 have at least 90% identity, preferably at least 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% identity.
- the dissociation constant (KD) of the antibody of the present invention or its antigen-binding fragment for binding to human EGFR and EGFRvIII is not greater than 10 -7 nM, and the dissociation constant (KD) for binding to cynomolgus monkey EGFR is not greater than 10 -7 nM. greater than 10 -8 nM;
- the Nanobody or antigen-binding fragment binds or does not bind to monkey EGFR protein
- the Nanobody or antigen-binding fragment binds or does not bind to murine EGFR protein
- the Nanobody or antigen-binding fragment does not compete with the C225 or 7D12 antibody.
- the antibody or antigen-binding fragment thereof of the invention comprises the sequence of any one of the constant regions of human or murine antibodies IgGl, IgG2, IgG3, IgG4, IgA, IgM, IgE or IgD; preferably human or murine Sequences of the constant regions of antibodies IgG1, IgG2, IgG3 or IgG4.
- the antibody or antigen-binding fragment thereof of the invention further comprises a heavy chain constant region sequence in the absence of a CH1 fragment.
- the antibody or antigen-binding fragment thereof of the present invention further comprises a heavy chain constant region sequence having CH2 and CH3 fragments, or, the antibody or antigen-binding fragment further comprises an antibody Fc region;
- the antibody constant region or antibody Fc region is linked to the antibody or antigen-binding fragment with or without a linking peptide
- the antibody constant region or antibody Fc region is from camelid, mouse, rat, rabbit, sheep or human;
- the antibody constant region or antibody Fc region is from IgG, IgA, IgM, IgD or IgE.
- the antibody or antigen-binding fragment thereof of the present invention is chimeric or humanized or fully human; preferably, the antibody or antigen-binding fragment is selected from the group consisting of monoclonal antibodies, polyclonal antibodies , natural antibodies, engineered antibodies, monospecific antibodies, multispecific antibodies (e.g. bispecific antibodies), monovalent antibodies, multivalent antibodies, full length antibodies, antibody fragments, naked antibodies, conjugated antibodies, humanized antibodies , fully human antibody, Fab, Fab', F(ab')2, Fd, Fv, scFv, diabody or single domain antibody.
- the antibody or antigen-binding fragment thereof of the present invention is further coupled with a therapeutic agent or a tracer; preferably, the therapeutic agent is selected from radioisotopes, chemotherapeutic agents or immunomodulatory agents, and the tracer
- the therapeutic agent is selected from radiographic contrast agents, paramagnetic ions, metals, fluorescent labels, chemiluminescent labels, ultrasound contrast agents or photosensitizers.
- the present invention also provides a multispecific antigen binding molecule; preferably, the multispecific antigen binding molecule comprises a first antigen binding moiety and a second antigen binding moiety, the first antigen binding
- the module comprises the antibody or antigen-binding fragment of any one of the above, and the second antigen-binding module specifically binds to other antigens other than EGFR or binds to a different EGFR epitope from the first antigen-binding module;
- the other antigens are selected from CD3, PD-1, PD-L1, Her2, EpCAM, CD16, CD20, CD30, CD33, CD47, CD52, CD64, CD133, CEA, gpA33, Mucins, TAG-72, CIX , PSMA, folate-binding protein, GD2, GD3, GM2, VEGF, VEGFR, Integrin, ⁇ V ⁇ 3, ⁇ 5 ⁇ 1, ERBB2, ERBB3, MET, IGF1R, EPHA3, TRAILR1, TRAILR2, RANKL or FAP;
- the multispecific antibody is "bispecific", “trispecific” or “tetraspecific”.
- the present invention provides a chimeric antigen receptor (CAR); preferably, the chimeric antigen receptor comprises at least an extracellular antigen binding domain, a transmembrane domain and an intracellular signaling structure domain, the extracellular antigen-binding domain comprises the EGFR antibody or antigen-binding fragment of any one of the above.
- CAR chimeric antigen receptor
- the present invention provides an immune effector cell; preferably, the immune effector cell comprises the above-mentioned chimeric antigen receptor or a nucleic acid fragment comprising the above-mentioned chimeric antigen receptor;
- the immune effector cells are selected from T cells, NK cells (natural killer cells), NKT cells (natural killer cells), monocytes, macrophages, dendritic cells or mast cells;
- the T cells may be selected from inflammatory T cells, cytotoxic T cells, regulatory T cells (Treg) or helper T cells;
- the immune effector cells are allogeneic immune effector cells or autologous immune cells.
- the present invention provides an isolated nucleic acid molecule encoding the Nanobody, antigen-binding fragment, or any combination thereof of any one of the above-described multispecific nucleic acid molecules of the present invention.
- the present invention provides an expression vector comprising the isolated nucleic acid molecule of the present invention described above.
- the present invention provides a host cell comprising the isolated nucleic acid molecule or expression vector of the present invention described above.
- the host cells are eukaryotic cells or prokaryotic cells; more preferably, the host cells are derived from mammalian cells, yeast cells, insect cells, Escherichia coli and/or Bacillus subtilis; more preferably, the The host cells are selected from HEK293E or Chinese hamster ovary cells (CHO).
- the present invention provides a method for preparing an antibody or antigen-binding fragment or multispecific antigen-binding molecule, culturing the above-described host cell of the present invention under appropriate conditions, and isolating the antibody or antigen-binding fragment or Multispecific antigen binding molecules.
- the present invention provides a method for preparing immune effector cells, wherein the nucleic acid fragment of the CAR described above is introduced into the immune effector cells, preferably, the method further comprises initiating the immune effector cells to express the above-mentioned immune effector cells. described CAR.
- the present invention provides a pharmaceutical composition comprising the above-described antibody or antigen-binding fragment of the present invention, the above-described multispecific antigen-binding molecule of the present invention, and the above-described embedded antigen-binding molecule of the present invention.
- the pharmaceutical composition further comprises a pharmaceutically acceptable carrier, diluent or adjuvant; more preferably, the pharmaceutical composition further comprises an additional anti-tumor agent.
- the present invention provides a method of preventing and/or treating a tumor disease or inflammatory disease, comprising administering to a patient in need thereof the above-described antibody or antigen-binding fragment of the present invention, the above-described present invention
- the tumor disease or inflammatory disease is a tumor disease or inflammatory disease overexpressing EGFR
- the tumor disease is preferably glioma, melanoma, glioblastoma, sarcoma, brain tumor, non-small cell lung cancer,
- the present invention provides an antibody or antigen-binding fragment described above, a multispecific antigen-binding molecule of the invention described above, a chimeric antigen receptor described above of the invention, a chimeric antigen receptor described above of the invention, Immune effector cells, isolated nucleic acid molecules described above in the present invention, expression vectors described above in the present invention, cells described above in the present invention, products prepared by the methods described above in the present invention (eg, antibodies and antigen-binding fragments) , or the use of the above-mentioned pharmaceutical composition of the present invention in the preparation of a medicament for preventing and/or treating a tumor disease or an inflammatory disease
- the tumor disease is preferably glioma, melanoma, glioblastoma, Sarcoma, Brain Tumor, Non-Small Cell Lung Cancer, Bladder Cancer, Breast Cancer, Endometrial Cancer, Lung Cancer, Ovarian Cancer, Prostate Cancer, Colon Cancer, Stomach Cancer, Liver Cancer, Kid
- the present invention provides an antibody or antigen-binding fragment described above, a multispecific antigen-binding molecule of the invention described above, a chimeric antigen receptor described above of the invention, a chimeric antigen receptor described above of the invention, Immune effector cells, isolated nucleic acid molecules described above in the present invention, expression vectors described above in the present invention, cells described above in the present invention, products prepared by the methods described above in the present invention (eg, antibodies and antigen-binding fragments) , or the above-mentioned pharmaceutical composition of the present invention is used for the prevention and/or treatment of tumor diseases or inflammatory diseases; the tumor diseases are preferably glioma, melanoma, glioblastoma, sarcoma, brain tumor, non- Small cell lung cancer, bladder cancer, breast cancer, endometrial cancer, lung cancer, ovarian cancer, prostate cancer, colon cancer, stomach cancer, liver cancer, kidney cancer, brain cancer, laryngeal cancer, rectal cancer, pancreatic
- the present invention provides a kit comprising the above-described antibody or antigen-binding fragment of the present invention, the above-described multispecific antigen-binding molecule of the present invention, and the above-described chimeric antigen of the present invention Receptors, immune effector cells described above in the present invention, isolated nucleic acid molecules described above in the present invention, expression vectors described above in the present invention, cells described above in the present invention, or prepared by methods described above in the present invention products (such as antibodies and antigen-binding fragments), or the above-described pharmaceutical compositions of the present invention, and instructions for use.
- a kit comprising the above-described antibody or antigen-binding fragment of the present invention, the above-described multispecific antigen-binding molecule of the present invention, and the above-described chimeric antigen of the present invention Receptors, immune effector cells described above in the present invention, isolated nucleic acid molecules described above in the present invention, expression vectors described above in the present invention, cells described above in the
- antibody refers to an immunoglobulin molecule that specifically binds or is immunoreactive with a target antigen, including polyclonal, monoclonal, genetically engineered and other modified forms of antibodies (including but not Limited to chimeric antibodies, humanized antibodies, fully human antibodies, heteroconjugated antibodies (e.g. bispecific, trispecific and tetraspecific antibodies, diabodies, triabodies and tetrabodies), antibody conjugates and Antigen-binding fragments of antibodies (including, for example, Fab', F(ab')2, Fab, Fv, rIgG, and scFv fragments).
- mAb monoclonal antibody
- mAb monoclonal antibody
- Fab and F(ab')2 fragments which lack the Fc fragment of an intact antibody (which clears faster from the animal's circulation) and thus lack Fc-mediated effector function (see Wahl et al., J. Nucl. Med. 24:316, 1983; the contents of which are incorporated herein by reference).
- an “antibody” herein can be derived from any animal, including, but not limited to, humans and non-human animals, which can be selected from primates, mammals, rodents, and vertebrates, such as camelid, llama , ostriches, alpacas, sheep, rabbits, mice, rats or cartilaginous fishes (eg sharks).
- natural antibody herein refers to an antibody that is produced and paired by the immune system of a multicellular organism.
- the antibody of the term “engineered antibody” herein refers to a non-natural antibody obtained by genetic engineering, antibody engineering and other techniques.
- engineered antibody includes humanized antibody, small molecule antibody (such as scFv, etc.), dual specific antibodies, etc.
- the term "monospecific” herein refers to having one or more binding sites, wherein each binding site binds the same epitope of the same antigen.
- multispecific herein refers to having at least two antigen-binding sites, each of which is associated with a different epitope of the same antigen or with a different epitope of a different antigen combine.
- terms such as “bispecific”, “trispecific”, “tetraspecific” etc. refer to the number of different epitopes to which an antibody/antigen binding molecule can bind.
- valency herein refers to the presence of a defined number of binding sites in an antibody/antigen binding molecule.
- the terms “monovalent”, “bivalent”, “tetravalent” and “hexavalent” refer to one binding site, two binding sites, four binding sites and six binding sites, respectively, in an antibody/antigen binding molecule the existence of points.
- Fully-length antibody “intact antibody,” and “intact antibody” are used interchangeably herein to mean that they have a structure that is substantially similar to that of a native antibody.
- antigen-binding fragment refers to one or more antibody fragments that retain the ability to specifically bind a target antigen.
- the antigen-binding function of an antibody can be performed by fragments of a full-length antibody.
- Antibody fragments can be Fab, F(ab')2, scFv, SMIP, diabodies, tribodies, affibodies, Nanobodies, aptamers or domain antibodies.
- binding fragments encompassing the term "antigen-binding fragment" of an antibody include, but are not limited to: (i) Fab fragments, a monovalent fragment consisting of the VL, VH, CL and CH1 domains; (ii) F(ab)2 Fragment, a bivalent fragment comprising two Fab fragments linked at the hinge region by disulfide bonds; (iii) Fd fragment consisting of VH and CH1 domains; (iv) VL and VH domains consisting of an antibody one-arm Constituent Fv fragments; (v) dAbs comprising VH and VL domains; (vi) dAb fragments consisting of VH domains (Ward et al., Nature 341:544-546, 1989); (vii) consisting of VH or VL A dAb consisting of domains; (viii) discrete complementarity determining regions (CDRs); and (ix) a combination of two or more discrete CDRs, which CDRs may optionally be
- the two domains of the Fv fragment, VL and VH are encoded by separate genes, the two domains can be joined using recombinant methods by a linker that enables it to be made in which the VL and VH regions are paired to form A single protein chain of a monovalent molecule (called a single-chain Fv (scFv); see, eg, Bird et al., Science 242:423-426, 1988 and Huston et al., Proc. Natl. Acad. Sci. USA 85:5879-5883 , 1988).
- scFv single-chain Fv
- These antibody fragments can be obtained using conventional techniques known to those skilled in the art, and these fragments are screened for use in the same manner as intact antibodies.
- Antigen-binding fragments can be produced by recombinant DNA techniques, enzymatic or chemical cleavage of intact immunoglobulins, or in some embodiments by chemical peptide synthesis procedures known in the art.
- EGFR refers to a member of the epidermal growth factor receptor family (EGFRs), EGFR family members including: EGFR (ErbB1), HER2 (ErbB2), HER3 (ErbB3) and HER4 (ErbB4).
- Epidermal growth factor receptor (EGFR) is a member of the ErbB family of transmembrane tyrosine kinase receptors.
- the ligands of EGFR are EGF and transforming growth factor-alpha (transforming growth factor-alpha). , TGF- ⁇ ).
- Ligand binding to EGFR induces conformational changes and dimerization of EGFR, leading to the activation of intracellular tyrosine kinases (TKs), and subsequent enzymatic cascades result in tumor cell proliferation, invasion, metastasis, new blood vessels Spawning and programmed death reduced.
- TKs tyrosine kinases
- EGFRvIII refers to a type III EGF deletion mutant receptor characterized by deletion of exons 2-7 in EGFR mRNA. These deletions correspond to cDNA nucleotides 275-1075 (encoding amino acids 6-276), presumably due to alternative splicing or rearrangement. Deletion of 801 bp in the extracellular domain of the EGFR gene results in an in-frame truncation of the normal EGFR protein, resulting in a 145 kDa receptor, thereby forming a tumor-specific immunogenic epitope. EGFRvIII expression has been observed in many tumor types, including glioblastoma multiforme (GBM), but is rare in normal tissues.
- GBM glioblastoma multiforme
- the term "bispecific antibody” refers to an antibody, typically a human or humanized antibody, having monoclonal binding specificities for at least two different antigens.
- one of the binding specificities can be detected against an epitope of EGFR, the other can be against another epitope of EGFR or any other antigen other than EGFR, such as for cell surface proteins, receptors, receptors Subunits, tissue-specific antigens, virus-derived proteins, virus-encoded envelope proteins, bacterial-derived proteins, or bacterial surface proteins are detected.
- chimeric antibody refers to an antibody having variable sequences of immunoglobulins derived from one source organism (eg, rat or mouse) and those derived from a different organism (eg, human). Constant regions of immunoglobulins.
- Methods for producing chimeric antibodies are known in the art. See, eg, Morrison, 1985, Science 229(4719): 1202-7; Oi et al, 1986, Bio Techniques 4: 214-221; Gillies et al, 1985 J Immunol Methods 125: 191-202; incorporated by reference above This article.
- the term “heavy chain antibody” refers to an antibody that lacks the light chain of conventional antibodies.
- the term specifically includes, but is not limited to, homodimeric antibodies comprising the VH antigen binding domain and the CH2 and CH3 constant domains in the absence of the CH1 domain.
- the term "nanobody” refers to a natural heavy chain antibody lacking the light chain in camels, and the variable region of which can be cloned to obtain a single domain antibody composed of only the variable region of the heavy chain, also known as VHH (Variable domain). of heavy chain of heavy chain antibody), which is the smallest functional antigen-binding fragment.
- VHHs and Nanobodies For a further description of VHHs and Nanobodies, reference is made to a review article by Muyldermans (2001, Reviews in Molecular Biotechnology 74: 277-302), and to the following patent applications mentioned as general background: WO 94/04678 of Vrije Universiteit Brussel; WO 95/04079 and WO 96/34103; WO 94/25591, WO 99/37681, WO 00/40968, WO 00/43507, WO 00/65057, WO 01/40310, WO 01/44301, EP to Unilever 1134231 and WO 02/48193; WO 97/49805, WO 01/21817, WO 03/035694, WO 03/054016 and WO 03/055527 by Vlaams Instituut voor Biotechnologie (VIB); WO 03/050 by Algonomics N.V.
- Nanobodies can be characterized inter alia by the presence of one or more "characteristic residues" in one or more framework sequences. Further descriptions of Nanobodies, including humanization and/or camelization of Nanobodies, and other modifications, parts or fragments, derivatives or "Nanobody fusions" can be found, for example, in WO 08/101985 and WO 08/142164.
- CDRs complementarity determining regions
- FRs framework regions
- amino acid positions representing the hypervariable regions of an antibody can vary depending on the context and various definitions known in the art. Some positions within a variable domain can be considered as heterozygous hypervariable positions, as these positions can be considered to be within a hypervariable region under one set of criteria (such as IMGT or KABAT), but are considered to be within a different set of criteria (eg KABAT or IMGT) outside the hypervariable regions. One or more of these positions can also be found in extended hypervariable regions.
- variable domains of native heavy and light chains each comprise four framework regions predominantly adopting a sheet configuration, connected by three CDRs (CDR1, CDR2 and CDR3) that form loops connecting the sheet structure , and in some cases form part of the lamellar structure.
- CDR1, CDR2 and CDR3 The CDRs in each chain are held tightly together by the FR regions in the order FR1-CDR1-FR2-CDR2-FR3-CDR3-FR4, and with CDRs from other antibody chains contribute to the formation of the antibody's antigen-binding site (see Kabat et al., Sequences of Proteins of Immunological Interest, National Institute of Health, Bethesda, Md. 1987; incorporated herein by reference).
- CDR1-VH, CDR2-VH and CDR3-VH refer to the first CDR, the second CDR and the third CDR of the heavy chain variable region (VH), respectively, which constitute the heavy chain variable region (VH).
- the CDR combination of the chain (or its variable region) (VHCDR combination);
- CDR1-VL, CDR2-VL and CDR3-VL refer to the first CDR, the second CDR and the first CDR of the light chain variable region (VL), respectively
- Three CDRs that make up the CDR combination of the light chain (or its variable region) (VLCDR combination).
- the term "monoclonal antibody” refers to an antibody derived from a single clone (including any eukaryotic, prokaryotic, or phage clone) without limitation to the method by which the antibody is produced.
- VH refers to the variable region of an immunoglobulin heavy chain of an antibody, including the heavy chain of an Fv, scFv, or Fab.
- VL refers to the variable region of an immunoglobulin light chain, including the light chain of an Fv, scFv, dsFv or Fab.
- variable domains refers to the carboxy-terminal portion of an antibody heavy chain that is not directly involved in the binding of the antibody to an antigen, but exhibits effector functions, such as interaction with Fc receptors, relative to the availability of the antibody
- the variable domains have more conserved amino acid sequences.
- a “heavy chain constant region” comprises at least one of the following: a CH1 domain, a hinge region, a CH2 domain, a CH3 domain, or variants or fragments thereof.
- “Heavy chain constant region” includes "full-length heavy chain constant region” and “heavy chain constant region fragment", the former has a substantially similar structure to that of natural antibody constant region, while the latter includes only "full-length heavy chain constant region” part".
- a typical "full-length antibody heavy chain constant region” consists of a CH1 domain-hinge region-CH2 domain-CH3 domain; when the antibody is an IgE, it also includes a CH4 domain; when the antibody is a heavy chain In the case of an antibody, it does not include the CH1 domain.
- a typical "heavy chain constant region fragment" can be selected from a CH1, Fc or CH3 domain.
- light chain constant region refers to the carboxy-terminal portion of an antibody light chain that is not directly involved in binding the antibody to an antigen, which light chain constant region may be selected from a constant kappa domain or a constant lambda domain.
- Fc refers to the papain hydrolyzed carboxy-terminal portion of an intact antibody, which typically comprises the CH3 and CH2 domains of the antibody.
- Fc regions include, for example, native sequence Fc regions, recombinant Fc regions, and variant Fc regions.
- the boundaries of the Fc region of an immunoglobulin heavy chain can vary slightly, the Fc region of a human IgG heavy chain is generally defined as extending from the amino acid residue at position Cys226 or from Pro230 to its carboxy terminus.
- the C-terminal lysine of the Fc region (residue 447 according to the EU numbering system) can be removed, for example, during the production or purification of the antibody, or by recombinant engineering of nucleic acid encoding the antibody heavy chain, thus, the Fc region can include or excluding Lys447.
- humanized antibody refers to a genetically engineered non-human antibody whose amino acid sequence has been modified to increase homology to the sequence of a human antibody.
- CDR regions of a humanized antibody are derived from a non-human antibody (donor antibody), and all or part of the non-CDR regions (eg, variable FR and/or constant regions) are derived from human Immunoglobulins (receptor antibodies).
- Humanized antibodies generally retain or partially retain the expected properties of the donor antibody, including, but not limited to, antigen specificity, affinity, reactivity, ability to increase immune cell activity, ability to enhance immune response, and the like.
- Fully human antibody refers to an antibody having variable regions in which both the FRs and CDRs are derived from human germline immunoglobulin sequences. Furthermore, if the antibody comprises a constant region, the constant region is also derived from human germline immunoglobulin sequences. Fully human antibodies herein may include amino acid residues not encoded by human germline immunoglobulin sequences (eg, mutations introduced by random or site-specific mutagenesis in vitro or by somatic mutation in vivo). However, "fully human antibodies” herein are not intended to include antibodies in which CDR sequences derived from the germline of another mammalian species (eg, mouse) have been grafted onto human framework sequences.
- another mammalian species eg, mouse
- naked antibody herein refers to an antibody that is not linked, fused or conjugated to another agent or molecule (eg, a label or drug), peptide or polypeptide.
- naked antibodies expressed by mammalian host cells can be glycosylated by the host cell's glycosylation machinery (eg, glycosylase).
- naked antibodies are not glycosylated when expressed by a host cell that does not have its own glycosylation machinery (eg, glycosylase).
- the naked antibody is an intact antibody, while in other embodiments, the naked antibody is an antigen-binding fragment of an intact antibody, eg, a Fab antibody.
- conjugated antibody refers to an antibody that can be associated with a pharmaceutically acceptable carrier or diluent, which can be a monoclonal, chimeric, humanized, or human antibody.
- diabody herein refers to bivalent bispecific antibodies that can bind to different epitopes on the same or different antigens.
- percent (%) sequence identity refers to aligning sequences and introducing gaps, if necessary, for maximum percent sequence identity (eg, for optimal alignment, can be used between candidate and reference After the introduction of gaps in one or both of the sequences, and for comparison purposes, non-homologous sequences may be ignored), the amino acid (or nucleotide) residues of the candidate sequence differ from the amino acid (or nucleotide) residues of the reference sequence. ) residues that are identical.
- alignment can be accomplished in a variety of ways well known to those skilled in the art, for example using publicly available computer software such as BLAST, ALIGN or Megalign (DNASTAIi) software.
- a reference sequence aligned for comparison to a candidate sequence may show that the candidate sequence exhibits from 50% over the full length of the candidate sequence or a selected portion of contiguous amino acid (or nucleotide) residues of the candidate sequence to 100% sequence identity.
- the length of candidate sequences aligned for comparison purposes may be, for example, at least 30% (eg, 30%, 40%, 50%, 60%, 70%, 80%, 90%, or 100%) of the length of the reference sequence. .
- amino acids herein generally refers to amino acids that belong to the same class or have similar characteristics (eg, charge, side chain size, hydrophobicity, hydrophilicity, backbone conformation, and rigidity).
- amino acids within each of the following groups belong to each other as conserved amino acid residues, and substitutions of amino acid residues within the groups belong to conservative amino acid substitutions:
- Acidic amino acids Asp(D) and Glu(E);
- Non-polar uncharged amino acids Cys(C), Met(M) and Pro(P);
- Aromatic amino acids Phe(F), Tyr(Y) and Trp(W).
- Kabat numbering system herein generally refers to the immunoglobulin alignment and numbering system proposed by Elvin A. Kabat (see, e.g., Kabat et al., Sequences of Proteins of Immunological Interest, 5th Ed. Public Health Service, National Institutes of Health, Bethesda, Md., 1991).
- Chothia numbering system generally refers to the immunoglobulin numbering system proposed by Chothia et al., which is a classical rule for identifying CDR region boundaries based on the position of structural loop regions (see, eg, Chothia & Lesk (1987) J. Mol. Biol 196:901-917; Chothia et al. (1989) Nature 342:878-883).
- IMGT numbering system herein generally refers to the immunoglobulin numbering system proposed by Chothia et al., which is a classical rule for identifying CDR region boundaries based on the position of structural loop regions (see, eg, Chothia & Lesk (1987) J. Mol. Biol 196:901-917; Chothia et al. (1989) Nature 342:878-883).
- the term "specific binding” refers to a binding reaction that determines the presence of an antigen in a heterogeneous population of proteins and other biomolecules such as antibodies or their antigens Binding fragment-specific recognition.
- An antibody or antigen-binding fragment thereof that specifically binds to an antigen will bind to the antigen with a KD of less than 100 nM.
- an antibody or antigen-binding fragment thereof that specifically binds to an antigen will bind to the antigen with a KD of up to 100 nM (eg, between 1 pM and 100 nM).
- Antibodies that do not exhibit specific binding to a particular antigen or epitope thereof or Antigen-binding fragments will exhibit a KD of greater than 100 nM (eg, greater than 500 nM, 1 ⁇ M, 100 ⁇ M, 500 ⁇ M, or 1 mM) for that particular antigen or epitope thereof.
- immunoassay formats can be used to select for specificity for a particular protein or carbohydrate The antibody of sexual immune response.
- solid-phase ELISA immunoassay to select the antibody that carries out specific immune response with protein or carbohydrate. See, Harlow & Lane, Antibodies, ALaboratory Manual, Cold Spring Harbor Press, New York ( 1988) and Harlow & Lane, Using Antibodies, A Laboratory Manual, Cold Spring Harbor Press, New York (1999), which describe immunoassay formats and conditions that can be used to determine specific immunoreactivity.
- antibody conjugate refers to a conjugate/conjugate in which an antibody molecule is chemically bonded to another molecule, either directly or through a linker.
- ADCs antibody-drug conjugates
- chimeric antigen receptor herein refers to a recombinant protein comprising at least (1) an extracellular antigen-binding domain, such as a variable heavy or light chain of an antibody, and (2) anchoring the CAR into Transmembrane domains of immune effector cells, and (3) intracellular signaling domains.
- the extracellular antigen binding domain of the CAR comprises an scFv.
- the scFv can be derived from the variable heavy and light regions of fusion antibodies. Alternatively or additionally, scFvs can be derived from Fab's (rather than antibodies, eg from Fab libraries). In certain embodiments, the scFv is fused to the transmembrane domain and then to the intracellular signaling domain.
- nucleic acid herein includes any compound and/or substance comprising a polymer of nucleotides.
- Each nucleotide consists of a base, especially a purine or pyrimidine base (i.e. cytosine (C), guanine (G), adenine (A), thymine (T) or uracil (U)), sugar (ie deoxyribose or ribose) and a phosphate group.
- cytosine C
- G guanine
- A adenine
- T thymine
- U uracil
- nucleic acid molecules are described by a sequence of bases, whereby the bases represent the primary structure (linear structure) of the nucleic acid molecule.
- the sequence of bases is generally represented as 5' to 3'.
- nucleic acid molecule encompasses deoxyribonucleic acid (DNA), including, for example, complementary DNA (cDNA) and genomic DNA, ribonucleic acid (RNA), especially messenger RNA (mRNA), synthetic forms of DNA or RNA, as well as synthetic forms of DNA or RNA. A mixed polymer of one or more of these molecules.
- Nucleic acid molecules can be linear or circular.
- nucleic acid molecule includes both sense and antisense strands, as well as single- and double-stranded forms.
- nucleic acid molecules described herein may contain naturally occurring or non-naturally occurring nucleotides.
- nucleic acid molecules also encompass DNA and RNA molecules suitable as vectors for the direct expression of the antibodies of the invention in vitro and/or in vivo, eg, in a host or patient.
- DNA eg, cDNA
- RNA eg, mRNA
- the mRNA can be chemically modified to enhance the stability of the RNA vector and/or the expression of the encoded molecule, so that the mRNA can be injected into a subject to generate antibodies in vivo (see, e.g., Stadler et al., Nature Medicine 2017, published online 12 June 2017, doi: 10.1038/nm.4356 or EP 2 101 823 B1).
- vector includes nucleic acid vectors, such as DNA vectors (eg, plasmids), RNA vectors, viruses, or other suitable replicons (eg, viral vectors).
- DNA vectors eg, plasmids
- RNA vectors eg. RNA vectors
- viruses eg. viral vectors
- viral vectors eg. viral vectors
- Various vectors have been developed for the delivery of polynucleotides encoding foreign proteins into prokaryotic or eukaryotic cells.
- the expression vectors of the present invention contain polynucleotide sequences and additional sequence elements, eg, for expressing proteins and/or integrating these polynucleotide sequences into the genome of mammalian cells.
- vectors that can be used to express the antibodies and antibody fragments of the invention include plasmids containing regulatory sequences (eg, promoter and enhancer regions) that direct gene transcription.
- Other useful vectors for expressing antibodies and antibody fragments contain polynucleotide sequences that enhance the translation rate of these genes or improve the stability or nuclear export of mRNA produced by gene transcription. These sequence elements include, for example, 5' and 3' untranslated regions, internal ribosome entry sites (IRES), and polyadenylation signal sites to direct efficient transcription of genes carried on expression vectors.
- Expression vectors of the present invention may also contain polynucleotides encoding markers for selection of cells containing such vectors. Examples of suitable markers include genes encoding resistance to antibiotics such as ampicillin, chloramphenicol, kanamycin or nourseothricin.
- host cell herein refers to a cell into which exogenous nucleic acid has been introduced, including progeny of such cells.
- Host cells include “transformants” and “transformed cells,” which include the primary transformed cell and progeny derived therefrom, regardless of the number of passages.
- the progeny may not be identical in nucleic acid content to the parent cell, but may contain mutations. Mutant progeny that have the same function or biological activity as screened or selected in the initially transformed cell are included herein.
- pharmaceutical composition refers to a formulation that is in a form that permits the biological activity of the active ingredients contained therein to be effective, and that does not contain unacceptable toxicity to the subject to whom the pharmaceutical composition is administered of additional ingredients.
- the terms "subject”, “subject” and “patient” refer to an organism receiving treatment for a particular disease or disorder (eg, cancer or infectious disease) as described herein.
- subjects and patients include mammals such as humans, primates, pigs, goats, rabbits, hamsters, cats, dogs, Guinea pigs, bovid family members (such as domestic cattle, bison, buffalo, elk and yak, etc.), sheep and horses, etc.
- treatment refers to surgical or therapeutic treatment for the purpose of preventing, slowing (reducing) unwanted physiological changes or pathologies, such as cell proliferative disorders such as cancer, in the subject being treated or infectious disease).
- beneficial or desirable clinical outcomes include, but are not limited to, reduction of symptoms, reduction in disease severity, stable disease state (ie, no worsening), delayed or slowed disease progression, improvement or alleviation of disease state, and remission (whether partial remission or complete remission), whether detectable or undetectable.
- Those in need of treatment include those already suffering from the disorder or disease as well as those prone to develop the disorder or disease or for whom the disorder or disease is to be prevented.
- alleviation, alleviation, weakening, alleviation, alleviation, etc. the meanings also include elimination, disappearance, non-occurrence, etc.
- an effective amount herein refers to an amount of a therapeutic agent that, when administered alone or in combination with another therapeutic agent, to a cell, tissue, or subject, is effective to prevent or alleviate a disease condition or progression of the disease.
- Effective amount also refers to an amount of the compound sufficient to relieve symptoms, eg, treat, cure, prevent or alleviate related medical conditions, or an increased rate of treatment, cure, prevention or alleviation of such conditions.
- a therapeutically effective dose refers to that ingredient alone.
- a therapeutically effective dose refers to the combined amount of active ingredients that produces a therapeutic effect, whether administered in combination, consecutively or simultaneously.
- appropriate conditions refers to conditions suitable for culturing various host cells, including eukaryotic cells and prokaryotic cells.
- cancer refers to or describes the physiological condition in mammals that is typically characterized by unregulated cell growth. Benign and malignant cancers are included in this definition.
- tumor refers to all neoplastic cell growth and proliferation, whether malignant or benign, and all pre-cancerous and cancerous cells and tissues.
- cancer and “tumor” are not mutually exclusive when referred to herein.
- anti-tumor agent refers to anti-tumor drugs, which are a class of drugs for the treatment of tumor diseases, including chemotherapeutic drugs, biological agents, and the like.
- EC50 refers to the half-maximal effective concentration, which includes the concentration of antibody that induces a half-way response between baseline and maximum after a specified exposure time. EC50 essentially represents the concentration of the antibody at which 50% of its maximal effect is observed and can be measured by methods known in the art.
- EC80 refers to the concentration of antibody that elicits 80% of the maximal effect.
- Figure 1 shows the serum antibody titers of alpaca after immunization.
- Figure 1A shows the serum antibody titer of alpaca after immunization with human EGFR-ECD protein detected by ELISA;
- Figure 1B shows the serum antibody titer of alpaca after human EGFR-ECD protein immunization detected by FACS.
- Figure 2 shows the detection results of EGFRvIII protein on reducing gel and non-reducing gel by SDS-PAGE.
- M marker;
- Figure 3 shows the binding reaction of ELISA detection control antibody to human EGFRvIII protein.
- the anti-EGFR vIII positive control antibodies were: C225, 7D12 and 30D8, and the negative control was hIgG1.
- Figure 4 shows the binding reaction of the control antibody to human pepvIII protein detected by ELISA.
- the anti-pepvIII protein positive control antibody was 30D8, and the negative control was hIgG1.
- Figure 5 is the FACS detection results of A431 cells
- Figure 5A is the FACS results of C225 antibody detection of EGFR expression in A431 cells
- Figure 5B is the FACS results of 30D8 antibody detection of EGFRvIII expression in A431 cells.
- the negative control was hIgG1.
- Figure 6 is the FACS results of MCF-7 cells
- Figure 6A is the FACS results of C225 antibody detecting EGFR expression in MCF-7 cells
- Figure 6B is the FACS results of 30D8 antibody detecting EGFRvIII expression in MCF-7 cells.
- the negative control was hIgG1.
- Figure 7 is the FACS result of C225 antibody detecting CHO-K1 human EGFR.
- the negative control was hIgG1.
- Figure 8 is the FACS results of the detection of HEK293T monkey EGFR by C225 antibody.
- the negative control was hIgG1.
- Figure 9 is the FACS result of 30D8 antibody detecting CHO-K1 human EGFRvIII.
- the negative control was hIgG1.
- Fig. 10 is the detection of the binding reaction of the VHH-Fc antibody of the present invention with human EGFR protein by ELISA.
- the anti-EGFR positive control antibodies were: C225, 7D12, and the negative control was hIgG1.
- Figure 11 is the FACS detection result of the binding of the VHH-Fc antibody of the present invention to the cell surface EGFR protein;
- Figure 11A is the FACS detection of the binding reaction between the VHH-Fc of the present invention and human A431 cells;
- Figure 11B is the FACS detection of the VHH-Fc antibody of the present invention Binding reaction to CHO-K1 human EGFR 1D4 cells.
- the anti-EGFR positive control antibodies were: C225, 7D12, and the negative control was hIgG1.
- Figure 12 shows the binding reaction of the VHH-Fc antibody of the present invention and human EGFRvIII protein detected by ELISA.
- the anti-human EGFR vIII positive control antibodies were: C225, 7D12, 30D8, and the negative control was hIgG1.
- Figure 13 shows the FACS detection of the binding reaction of the VHH-Fc antibody of the present invention to CHO-K1 human EGFRvIII1C6 cells.
- the anti-human EGFR vIII positive control antibodies were: C225, 7D12, 30D8, and the negative control was hIgG1.
- Figure 14 shows the binding reaction of the VHH-Fc antibody of the present invention to the murine EGFR protein detected by ELISA.
- the negative control was hIgG1.
- Figure 15 shows the binding reaction of the VHH-Fc antibody of the present invention to the monkey EGFR protein detected by ELISA.
- the anti-monkey EGFR positive control antibodies were: C225, 7D12, and the negative control was hIgG1.
- Figure 16 shows the FACS detection of the binding reaction of the VHH-Fc antibody of the present invention to HEK293T monkey EGFR cells.
- the anti-EGFR positive control antibodies were: C225, 7D12, and the negative control was hIgG1.
- Figure 17 is the FACS detection of the specific binding reaction of the VHH-Fc antibody of the present invention with the human EGFR protein on the cell surface.
- Figure 17A is the FACS detection of the binding reaction of the VHH-Fc antibody of the present invention and A431 cells;
- Figure 17B is the FACS detection of the binding reaction of the VHH-Fc antibody of the present invention to MCF-7 cells;
- Figure 17C is the FACS detection of the VHH-Fc antibody of the present invention and Binding reaction of CHO-K1-human EGFR 1D4 cells;
- FIG. 17D is the FACS detection of the binding reaction of the VHH-Fc antibody of the present invention to CHO-K1 null cells.
- the anti-EGFR positive control antibodies were: C225, 7D12, and the negative control was hIgG1.
- Figure 18 is the FACS detection of the specific binding reaction of the VHH-Fc antibody of the present invention with the monkey EGFR protein on the cell surface.
- Figure 18A is the FACS detection of the binding reaction of the VHH-Fc antibody of the present invention to HEK293T-monkey EGFR cells;
- Figure 18B is the FACS detection of the binding reaction of the VHH-Fc antibody of the present invention to 293 null cells.
- the anti-EGFR positive control antibodies were: C225, 7D12, and the negative control was hIgG1.
- Figure 19 shows the binding reaction of the VHH-Fc antibody of the present invention to Her2 protein detected by ELISA.
- Figure 20 shows the detection of the binding between the VHH-Fc antibody of the present invention and pepvIII by ELISA.
- the anti-pepvIII positive control antibody was: 30D8, and the negative control was hIgG1.
- Fig. 21 is the competitive ELISA method to detect the inhibition rate among the VHH antibodies of the present invention.
- Figure 22 is a classification of the epitopes of the VHH antibodies of the present invention.
- Human EGFR protein for immunization was purchased from ACRO Biosystems (Cat. No. EGR-H5222). Two alpacas (Llama) were selected for immunization, and each alpaca was immunized four times with an interval of 3 weeks. After the third immunization (TB2) and the fourth immunization (TB3), peripheral blood was collected and serum was separated. The titer and specificity of antibodies against human EGFR in serum were detected by enzyme-linked immunosorbent assay (ELISA) and flow cytometry (FACS). The results are shown in Figures 1A-1B and Table 1. Table 1 shows that the serum titer of the third immunization (TB2) has increased, and the serum titer of the fourth immunization (TB3) has remained stable, and alpaca can be used for VHH antibody library construction.
- ELISA enzyme-linked immunosorbent assay
- FACS flow cytometry
- RNAiso Plus reagent (Takara, Cat. No.: #9108/9109) was used to extract total RNA, using PrimeScript TM II 1st Strand The cDNA Synthesis Kit (Takara, Cat. No. 6210A) reverse-transcribes the extracted RNA into cDNA.
- Downstream primer GGTACGTGCTGTTGAACTGTTCC (SEQ ID NO.2)
- Upstream primer CATGCCATGACTGTGGCCCAGGCGGCCCAGKTGCAGCTCGTGGAGTC (SEQ ID NO.3)
- the target Nanobody nucleic acid fragment was recovered and cloned into the phage display vector pcomb3XSS (from Sichuan Apak Biotechnology Co., Ltd.) using the restriction enzyme SfiI (NEB, catalog number: R0123S).
- the product was then electro-transformed into E. coli electro-competent cells TG1, and a nanobody phage display library against EGFR was constructed and the library was tested.
- the size of the library volume was calculated to be 2.0 ⁇ 10 9 by serial dilution plating.
- 48 clones were randomly selected for colony PCR, and the results showed that the insertion rate reached 100%.
- the obtained human EGFR-binding-positive phage was infected with blank E. coli and plated. Then 96 single colonies were selected for expansion and culture. The plates were respectively coated with human EGFR-His protein at 4°C overnight, the phage culture supernatant was added, and the plates were incubated at 37°C for 1 hour. Add 1:1000 diluted horseradish catalase-labeled M13 antibody anti-M13-HRP (NBbiolab, product number: S004H) for washing, then add TMB chromogenic solution to develop color, and measure the optical density at a wavelength of 450nm. Human EGFR-positive clones were selected for sequencing.
- the sequencing results were analyzed using MOE software, and the phylogenetic tree was constructed according to the amino acid sequence of the VHH-encoded protein. After removing the sequences with closer distances on the phylogenetic tree according to the sequence similarity, 22 clones were obtained.
- IMGT software analysis the corresponding sequence information is shown in Table 2-4 below, in which Table 2 shows the antibody sequence represented by 22 Nanobody molecule amino acids, Table 3 shows the antibody sequence represented by 22 Nanobody molecule nucleotides, Table 2 4 shows the results of IMGT, Kabat and Chothia analysis of 22 Nanobody molecule CDRs. Production characterization of VHH Nanobody Fc fusion proteins was subsequently performed.
- the VHH variable region sequence was recombined by Taizhou Baiying Biotechnology Co., Ltd. into the expression vector BI3.
- 4-huIgG1 from Biointron
- plasmids according to established standard molecular biology methods, see Sambrook, J., Fritsch, E.F., and Maniatis, T. (1989). Molecular Cloning: A Laboratory Manual, Second Edition (Plainview, New York:Cold Spring Harbor Laboratory Press).
- the expression vector was transiently transfected into HEK293E cells (purchased from the Cell Bank of the Chinese Academy of Sciences Type Culture Collection) according to the instructions of PEI (purchased from Polysciences, Cat.
- the cells were continuously cultured at °C for 5 days, and the cell components were removed by centrifugation to obtain a culture supernatant containing VHH-Fc antibody.
- the culture supernatant was loaded onto a protein A chromatography column (Protein A packing AT Protein A Diamond and chromatography column BXK16/26 were purchased from Borglon, catalog number: AA0273 and B-1620), using PBS phosphate buffered saline (pH 7.4) and then washed with 20 mM PB, 1 M NaCl (pH 7.2), and finally eluted with pH 3.4 citrate buffer to collect the Fc tag eluted from the Protein A column.
- the antibody was neutralized with 1/10 volume of 1M Tris pH 8.0, dialyzed with PBS overnight at 4°C, and the dialyzed protein was sterile filtered through a 0.22-micron filter membrane and stored in aliquots at -80°C.
- C225 and 7D12 clones are antibodies that recognize human EGFR; 30D8 clones only recognize human EGFRvIII antibodies; 4D5 clones are antibodies that recognize human Her2.
- the heavy chain variable region (amino acid sequence SEQ ID NO. 8) and light chain variable region sequence (amino acid sequence SEQ ID NO. 9) of the C225 clone were obtained from the marketed drug Cetuximab; the heavy chain variable region of the 7D12 clone was obtained.
- Chain variable region (amino acid sequence SEQ ID NO. 10) obtained according to patent US10035856B2 (which is incorporated herein by reference), heavy chain variable region (amino acid sequence SEQ ID NO.
- the C225 heavy chain variable region and light chain variable region are connected by 3 GGGGS linkers, and cloned into the BI3.4-huIgG1 vector to form the form of C225-scFv-hFc, hereinafter referred to as C225; 30D8 and 30D8 and
- the light chain variable region sequence of the 4D5 clone was cloned into the expression vector pcDNA3.4-B1HH1 containing the signal peptide and the light chain constant region of the human antibody IgG1, and the heavy chain variable region sequence was cloned into the signal peptide and human antibody respectively.
- the sequences of 30D8-hIgG1 and 4D5-hIgG1 were obtained, hereinafter referred to as 30D8 and 4D5; the heavy chain antibody 7D12 variable region sequence was cloned into a signal peptide and human source
- the expression vector BI3.4-huIgG1 for the Fc region of the IgG1 antibody the format of 7D12-VHH-Fc is formed, hereinafter referred to as 7D12.
- the plasmid was constructed according to the method of Example 2.1, and expressed and purified in HEK293E cells.
- the amino acid sequence information of the above-mentioned antibodies used is shown in Table 5 below:
- the negative control antibody hIgG1 is the antibody anti-hel-hIgG1 against Hen Egg Lysozyme chicken egg lysozyme (purchased from Baiying, product number: B117901), hereinafter referred to as hIgG1.
- nucleotide sequences containing the amino acid sequences Leu25-Ser378 (SEQ ID NO: 16) encoding the extracellular domain (ECD) of human EGFRvIII protein (NCBI: NP_001333870.1, SEQ ID NO: 15) were cloned into pTT5 vector (purchased from General Biosystems (Anhui) Co., Ltd.) and prepared plasmids according to established standard molecular biology methods. The corresponding amino acid sequence information is shown in Table 6 below. For specific methods, see Sambrook, J., Fritsch, EF, and Maniatis, T. (1989). Molecular Cloning: A Laboratory Manual, Second Edition (Plainview, New York: Cold Spring Harbor Laboratory Press).
- HEK293E cells purchased from Suzhou Yiyan Biotechnology Co., Ltd.
- PEI Polysciences, Cat. No. 24765-1
- FreeStyleTM 293 Invitrogen, Cat. No. 12338018
- the cell culture medium was collected, and the cell components were removed by centrifugation to obtain the culture supernatant containing the extracellular domain of human EGFRvIII protein.
- the culture supernatant was loaded on a nickel ion affinity chromatography column HisTrap TM Excel (GE Healthcare, Cat.
- the change of the ultraviolet absorption value (A280nm) was monitored with an ultraviolet (UV) detector.
- UV ultraviolet
- the nickel ion affinity chromatography column was washed with 20mM PB, 0.5M NaCl (pH7.4) until the UV absorption value returned to the baseline, and then buffer A: 20mM PB, 0.5M NaCl (pH7.4) and buffer B : 20 mM PB, 0.5 M NaCl, 500 mM imidazole for gradient elution (2%, 4%, 8%, 16%, 50%, 100%), and the His-bands eluted from the nickel ion affinity chromatography column were collected
- the tagged human EGFRvIII protein was dialyzed against PBS phosphate buffer (pH 7.4) overnight in a refrigerator at 4°C.
- the dialyzed protein was sterile filtered through a 0.22-micron filter membrane and then stored at -80°C to obtain purified EGFRvIII protein.
- the prepared EGFRvIII protein was tested by ELISA with positive control antibodies C225, 7D12, and 30D8. The test results are shown in Figure 3. C225, 7D12 and 30D8 can all bind to human EGFRvIII protein. The test results are consistent with those reported in the literature, indicating that they have been prepared. The above protein with binding activity was obtained.
- A431 cells (purchased from the Chinese Academy of Sciences Cell Bank, Cat. No.: TCHu188) were expanded and cultured in a T-175 cell culture flask to the logarithmic growth phase, the medium supernatant was discarded by centrifugation, and the cell pellet was washed twice with PBS.
- C225, 30D8 antibody was used as primary antibody
- Alexa488-labeled secondary antibody (purchased from Invitrogen, product number: A11013)
- the analysis results are shown in Table 7 and Figures 5A-5B. The results showed that: A431 cells could bind to C225, but not to 30D8, and A431 cells were used as positive cells for EGFR antibody screening.
- MCF-7 cells (purchased from the Cell Bank of the Chinese Academy of Sciences, Cat. No.: TCHu 74) were expanded and cultured in a T-175 cell culture flask to the logarithmic growth phase, the medium supernatant was discarded by centrifugation, and the cell pellet was washed twice with PBS.
- C225 and 30D8 antibodies were used as primary antibodies, and Alexa488-labeled secondary antibodies were used to detect and analyze the results by FACS (FACS CantoTM, purchased from BD Company).
- FACS Fluor CantoTM, purchased from BD Company.
- the analysis results are shown in Table 8 and Figures 6A-6B. The results showed that MCF-7 cells did not bind to C225 and 30D8, and MCF-7 cells were used as negative cells for EGFR antibody screening.
- the nucleotide sequence encoding human EGFR (NCBI: NP_005219, SEQ ID NO: 17) was cloned into pcDNA3.1 vector (completed by Universal Biosystems (Anhui) Co., Ltd.) and a plasmid was prepared.
- the CHO-K1 cell line (purchased from the cell bank of the Type Culture Collection, Chinese Academy of Sciences) was transfected with plasmids ( 3000 Transfection Kit, purchased from Invitrogen, Cat. No.: L3000-015), selectively cultured for 2 weeks in DMEM/F12 medium containing 10 ⁇ g/ml puromycin and 10% (w/w) fetal bovine serum.
- Anti-EGFR antibody C225 was used to sort positive monoclonal cells on a flow cytometer FACS AriaII (BD Biosciences) into 96-well plates and cultured in a 37°C, 5% (v/v) CO 2 cell incubator for approximately 2 A few monoclonal wells were selected for amplification after a few weeks. The amplified clones were screened by flow cytometry using C225 antibody as the primary antibody. The monoclonal cell line with better growth and higher fluorescence intensity was selected to continue to expand the culture and cryopreserved in liquid nitrogen.
- CHO-K1-human EGFR 1F2 CHO-K1-human EGFR 1E9 and CHO-K1-human EGFR 1D4 are Monoclonal cell lines expressing high levels of EGFR.
- monkey EGFR The nucleotide sequence encoding the full-length amino acid sequence of cynomolgus monkey EGFR (hereinafter referred to as monkey EGFR) (NCBI: XP_005549616.1, SEQ ID NO: 18) was cloned into the pcDNA3.1 vector (limited by Universal Biosystems (Anhui) Company completed, Cat. No.: GNHa 7) and prepared plasmids.
- HEK293T cell line HD Promega, Cat. No.: #E2311
- Subcloning was performed in 96-well culture plates and cultured in a 37°C, 5% (v/v) CO 2 cell incubator, and some polyclonal wells were selected and expanded into 6-well plates after approximately 2 weeks.
- the amplified clones were screened by flow cytometry with the EGFR antibody C225 with monkey cross-activity, and the cell lines with better growth and higher fluorescence intensity were selected to continue to expand the culture and cryopreserved in liquid nitrogen.
- Figure 8 shows the C225 antibody
- the results of flow cytometry analysis of HEK293T cell line showed that after puromycin screening, the cell line showing a single positive cell peak overexpressing monkey EGFR can be used to detect the cross-activity of the antibody.
- the nucleotide sequence encoding human EGFRvIII (NCBI: NP_001333870.1, SEQ ID NO: 15) was cloned into pcDNA3.1 vector (completed by General Biosystems (Anhui) Co., Ltd.) and a plasmid was prepared.
- the monoclonal amplification of the CHO-K1-EGFRvIII cell line was completed according to the method described in 3.3.
- the amplified clones were screened by flow cytometry using 30D8 as the primary antibody.
- the monoclonal cell line with better growth and higher fluorescence intensity was selected to continue to expand the culture and cryopreserved in liquid nitrogen.
- the specific selection results are shown in Table 10 and Figure 9, and the IgG subtype control is the hIgG1 control.
- the results in Table 10 and Figure 9 show that a series of CHO-K1 monoclonal cell lines that positively express human EGFRvIII have been prepared, and CHO-K1-EGFRvIII 1C6 and CHO-K1-EGFRvIII 2G3 are monoclonal cell lines that express high levels of EGFRvIII.
- Enzyme-linked immunosorbent assay to detect the binding of VHH-Fc antibody to EGFR protein
- human EGFR protein purchased from Acro, Cat. No. EGR-H5222 was diluted with PBS to a final concentration of 1 ⁇ g/mL, and then added to a 96-well ELISA plate at 50 ⁇ l/well. Cover with plastic film and incubate at 4°C overnight, wash the plate twice with PBS the next day, add blocking solution [PBS+2% (w/w) BSA] and block for 2 hours at room temperature. Pour off the blocking solution and add 50 ⁇ l/well of 100 nM serially diluted VHH-Fc antibody or negative control antibody. After incubation at 37°C for 2 hours, the plate was washed 3 times with PBS.
- HRP horseradish peroxidase-labeled secondary antibody (purchased from Sigma, catalog number: A0170) was added, and after incubation at 37°C for 2 hours, the plate was washed 5 times with PBS. 50 ⁇ l/well of TMB substrate was added, and after incubation at room temperature for 30 minutes, 50 ⁇ l/well of stop solution (1.0N HCl) was added.
- VHH-Fc and human EGFR are shown in Figure 10 and Table 11, wherein the IgG control is hIgG1; 7D12, C225 are EGFR protein positive control. The results indicated that all VHH-Fc antibodies bound to human EGFR protein at the ELISA level.
- the desired cells were expanded to logarithmic growth phase in T-75 cell culture flasks.
- adherent cells A431, MCF-7, CHO-K1, HEK293T the medium was aspirated, washed twice with PBS buffer, and then with Cells were trypsinized and washed twice with PBS buffer after termination of digestion.
- After counting the cells in the previous step resuspend the cell pellet with [PBS+2% (w/w) FBS] blocking solution to 4 ⁇ 10 6 cells/ml, and add 50 ⁇ l/well to a 96-well FACS reaction plate. Add 50 ⁇ l of VHH-Fc antibody test sample to each well, and incubate on ice for 1 hour.
- the cells were centrifuged and washed 3 times with PBS buffer, 50 ⁇ l/well of Alexa Flour 488-labeled secondary antibody (purchased from Invitrogen, catalog number: A-11013) was added, and the cells were incubated on ice for 1 hour.
- the cells were centrifuged and washed 5 times with PBS buffer, and the results were detected and analyzed by FACS (FACS CantoTM, purchased from BD Company). Data analysis was performed by software (CellQuest) to obtain the mean fluorescence intensity (MFI) of the cells. Then, it was analyzed by software (GraphPad Prism8), data fitting was performed, and EC50 value was calculated.
- Enzyme-linked immunosorbent assay to detect the binding of VHH-Fc antibody to EGFRvIII protein
- the purified human EGFRvIII protein obtained in Example 2 was diluted with PBS to a final concentration of 1 ⁇ g/mL, and then added to a 96-well ELISA plate at 50 ⁇ l/well, according to the experimental method described in 4.1 The binding activity of VHH-Fc antibody to human EGFRvIII protein was detected.
- the experimental results are shown in Figure 12 and Table 13.
- the IgG control was hIgG1; 30D8, 7D12, and C225 were EGFRvIII protein positive controls.
- the data in the table are OD450nm values.
- VHH-Fc antibody to EGFRvIII protein on the surface of CHO-K1 cell line was analyzed.
- the analysis results are shown in Table 14 and Figure 13, wherein the IgG control is hIgG1; 30D8, 7D12, and C225 are EGFRvIII protein positive controls.
- the results showed that the antibody S008-NB149-64 had no binding activity to the EGFRvIII protein on the surface of CHO-K1-EGFRvIII1C6, and the other VHH-Fc antibodies all bound to the human EGFRvIII protein on the surface of CHO-K1-EGFRvIII1C6 cells.
- VHH-Fc In order to detect the species cross-activity of VHH-Fc antibody, commercial murine EGFR (SB, cat. No.: 51091-M08H) and monkey EGFR (SB, cat. No.: 90285-C08H) were coated on ELISA plates, respectively. Methods ELISA detection.
- the ELISA results of VHH-Fc and murine EGFR are shown in Figure 14 and Table 13, wherein the IgG control is hIgG1; the anti-mouse EGFR antibody, clone#004 (purchased from SB, Cat. No. 51091-R004) is the murine EGFR protein positive control.
- Table 15 shows that 22 purified VHH-Fc antibodies, including 9 antibodies S008-NB148-25, S008-NB148-5, S008-NB148-69, S008-NB149-1, S008-NB149-12, S008- NB149-15, S008-NB149-20, S008-NB149-22, S008-NB149-60 did not bind to mouse EGFR protein at the ELISA level, and the other antibodies could bind to the mouse EGFR protein at the ELISA level.
- Anti-mouse EGFR antibody #004 was diluted 1:10000 and had an OD450 of 1.72.
- VHH-Fc antibody and monkey EGFR are shown in Figure 15 and Table 16, wherein the IgG control is hIgG1; anti-C225, 7D12 is the monkey EGFR protein positive control.
- the results showed that S008-NB148-2 had no binding activity to the monkey EGFR protein at the ELISA level, while the other VHH-Fc antibodies had binding activity to the monkey EGFR protein.
- the HEK293T-monkey EGFR cells were subjected to FACS detection and data analysis according to the method of Example 4.2.
- the analysis results are shown in Figure 16 and Table 17, wherein the IgG control is hIgG1; the anti-C225, 7D12 is the monkey EGFR protein positive control.
- the results showed that S008-NB148-2 had no binding activity to the monkey EGFR protein on the surface of HEK293T cells, while other VHH-Fc antibodies had binding activity to the monkey EGFR protein on the surface of 293 cells.
- the endogenous cells A431 expressing human EGFR, the transfected cell line CHO-K1-human EGFR 1D4 cells and the cell line MCF-7 not expressing human EGFR, CHO-K1 null cells were subjected to FACS detection and detection according to the method of Example 4.2. data analysis.
- the analysis results are shown in Table 18 and Figures 17A-17D, wherein the IgG control is hIgG1; the anti-C225, 7D12 is the monkey EGFR protein positive control.
- the results showed that all VHH-Fc antibodies had specific binding activity to the human EGFR protein on the cell surface.
- VHH-Fc antibody binding to EGFR family proteins In order to detect the specificity of VHH-Fc antibody binding to EGFR family proteins, commercial Her2 protein (purchased from Acro, product number HE2-H5225) was coated on ELISA plate, and ELISA detection was carried out according to the method of Example 4.1.
- the ELISA results of VHH-Fc and Her2 protein are shown in Figure 19 and Table 20, where the IgG control is hIgG1; 4D5 is the positive control of Her2 protein, only one concentration of 10nM is set during the detection, and the detection result OD450 is 4.00, the same concentration as hIgG1
- the difference in the detection results below is more than 10 times, indicating that this experiment can be used to determine the binding reaction of VHH-Fc antibody to EGFR family protein Her2.
- the results showed that none of the purified VHH-Fc antibodies bound to human Her2 protein at the ELISA level.
- Anti-human EGFR VHH-Fc antibody was captured using a Protein A chip (GE Helthcare; 29-127-558).
- Sample and running buffer were HBS-EP+ (10 mM HEPES, 150 mM NaCl, 3 mM EDTA, 0.05% surfactant P20) (GE Healthcare; BR-1006-69).
- the flow-through cell was set to 25 °C.
- the sample block was set to 16°C. Both were pretreated with running buffer.
- the antibody to be tested was first captured with a Protein A chip, and then a single concentration of EGFR antigen protein was injected to record the binding and dissociation process of the antibody and antigen protein.
- the binding rate (Ka), dissociation rate (Kd) and binding affinity (KD) of VHH-Fc antibody to human EGFR protein are shown in Table 21, wherein antibodies C225 and 7D12 were used as positive controls. As shown in Table 21, all VHH-Fc antibodies bound to human EGFR protein with better affinity than 5.21E-07M.
- VHH-Fc antibody and human EGFRvIII protein were determined according to the method of Example 8.1, wherein antibodies 7D12, C225 and 30D8 were used as positive controls. As shown in Table 22, the VHH-Fc antibodies S008-NB148-2 and S008-NB149-64 did not detect binding signals to human EGFRvIII, and the other antibodies bound to human EGFRvIII protein with affinities better than 5.64E-08M.
- VHH-Fc antibody and the above-mentioned monkey EGFR protein was determined according to the method of Example 8.1, wherein antibodies 7D12 and C225 were used as positive controls, and 30D8 was used as negative controls. As shown in Table 23, no binding signal was detected between the S008-NB148-2 antibody and the monkey EGFR protein, and the other antibodies were all bound to the monkey EGFR protein, and the affinity was better than 2.44E-08M.
- the pepvIII polypeptide obtained in Example 2.4 was coated according to the ELISA method in Example 4.1. As shown in Figure 20, in which the antibody 30D8 was used as a positive control, all VHH-Fc antibodies did not bind to the polypeptide pepvIII. Except for S008-NB149-64 which does not bind to EGFRvIII protein, the other antibody binding sites are not on the N-terminal polypeptide pepvIII of EGFRvIII protein.
- a competitive ELISA method was used for epitope sorting of VHH antibodies against control antibodies of known epitopes.
- the ELISA plate was coated with 1 ⁇ g/mL antibody according to the method of Example 4.2, and the human EGFR protein was serially diluted from 30 ⁇ g/mL, and the EC80 value was calculated (Table 25).
- the ELISA plate was coated with 1 ⁇ g/mL antibody, and after adding 25 ⁇ g/mL of the antibody to be detected, human EGFR protein at the EC80 concentration corresponding to each coated antibody was added, incubated for 2 h, washed with PBS for 5 times, and then added with HRP-labeled Anti-His antibody (purchased from GenScrip, Cat. No.
- the 24 antibodies including positive antibodies can be divided into 6 groups, S008-NB149-2, S008-NB148-69, S008-NB148-52 are the first Group; S008-NB149-20, S008-NB148-13, S008-NB148-77, S008-NB148-8, S008-NB148-9, S008-NB149-60, S008-NB148-2, S008-NB148-70, S008-NB149-15 is the second group; S008-NB148-5, S008-NB148-25, S008-NB148-10, S008-NB149-12, S008-NB149-22 antibodies compete with the first group of antibodies, It also competes with the second group of antibodies; S008-NB148-30 is the third group; S008-NB148-48 competes with the second group of antibodies and the third group of antibodies; S008-NB149-1 , S008-NB149-9 is the fourth group; C225, 7D12 is the fifth group, all antibodies have no competitive relationship with
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Description
抗体名称 | 最大平均荧光强度 | EC50 |
Max MFI | nM | |
S008-NB148-10 | 18561 | 11.69 |
S008-NB148-13 | 18508 | 1.31 |
S008-NB148-2 | 88 | 阴性 |
S008-NB148-25 | 19578 | 3.08 |
S008-NB148-30 | 2476 | 31.91 |
S008-NB148-48 | 4749 | 47.61 |
S008-NB148-5 | 16156 | 27.63 |
S008-NB148-52 | 9574 | 123.4 |
S008-NB148-69 | 17575 | 15.87 |
S008-NB148-70 | 11983 | 2.13 |
S008-NB148-77 | 12653 | 2.18 |
S008-NB148-8 | 12922 | 2.18 |
S008-NB148-9 | 2901 | 20.12 |
S008-NB149-1 | 16491 | 1.10 |
S008-NB149-12 | 18880 | 8.87 |
S008-NB149-15 | 19163 | 3.89 |
S008-NB149-2 | 1373 | 174.4 |
S008-NB149-20 | 16979 | 27.95 |
S008-NB149-22 | 9273 | 拟合差 |
S008-NB149-60 | 14118 | 2.68 |
S008-NB149-64 | 18730 | 1.17 |
S008-NB149-9 | 8957 | 0.57 |
30D8 | 77 | 阴性 |
7D12 | 18711 | 0.70 |
C225 | 21057 | ~0.85 |
hIgG1 | 240 | 阴性 |
EGFR_ | EC80μg/mL |
hIgG1 | 阴性 |
S008-NB148-10 | 10.5 |
S008-NB148-13 | 1.1 |
S008-NB148-2 | 15.2 |
S008-NB148-25 | 8.3 |
S008-NB148-30 | 21.1 |
S008-NB148-48 | 64.2 |
S008-NB148-5 | 20.1 |
S008-NB148-52 | 2.9 |
S008-NB148-69 | 3.3 |
S008-NB148-70 | 37.4 |
S008-NB148-77 | 46.2 |
S008-NB148-8 | 76.0 |
S008-NB148-9 | 7.9 |
S008-NB149-1 | 3.0 |
S008-NB149-12 | 2.2 |
S008-NB149-15 | 2.4 |
S008-NB149-2 | 2.9 |
S008-NB149-20 | 2.6 |
S008-NB149-22 | 4.6 |
S008-NB149-60 | 5.4 |
S008-NB149-64 | 0.1 |
S008-NB149-9 | 24.5 |
30D8 | 阴性 |
7D12 | 138.9 |
C225 | 862 |
Claims (22)
- 权利要求1所述的纳米抗体或抗原结合片段,其特征在于,(1)所述CDR1、CDR2和CDR3分别如SEQ ID NO.63、64、65所示序列;(2)所述CDR1、CDR2和CDR3分别如SEQ ID NO.66、67、68所示序列;(3)所述CDR1、CDR2和CDR3分别如SEQ ID NO.69、70、71所示序列;(4)所述CDR1、CDR2和CDR3分别如SEQ ID NO.72、73、74所示序列;(5)所述CDR1、CDR2和CDR3分别如SEQ ID NO.75、76、77所示序列;(6)所述CDR1、CDR2和CDR3分别如SEQ ID NO.78、79、80所示序列;(7)所述CDR1、CDR2和CDR3分别如SEQ ID NO.81、82、83所示序列;(8)所述CDR1、CDR2和CDR3分别如SEQ ID NO.84、85、86所示序列;(9)所述CDR1、CDR2和CDR3分别如SEQ ID NO.87、88、89所示序列;(10)所述CDR1、CDR2和CDR3分别如SEQ ID NO.90、91、92所示序列;(11)所述CDR1、CDR2和CDR3分别如SEQ ID NO.93、94、95所示序列;(12)所述CDR1、CDR2和CDR3分别如SEQ ID NO.96、97、98所示序列;(13)所述CDR1、CDR2和CDR3分别如SEQ ID NO.99、100、101所示序列;(14)所述CDR1、CDR2和CDR3分别如SEQ ID NO.102、103、104所示序列;(15)所述CDR1、CDR2和CDR3分别如SEQ ID NO.105、106、107所示序列;(16)所述CDR1、CDR2和CDR3分别如SEQ ID NO.108、109、110所示序列;(17)所述CDR1、CDR2和CDR3分别如SEQ ID NO.111、112、113所示序列;(18)所述CDR1、CDR2和CDR3分别如SEQ ID NO.114、115、116所示序列;(19)所述CDR1、CDR2和CDR3分别如SEQ ID NO.117、118、119所示序列;(20)所述CDR1、CDR2和CDR3分别如SEQ ID NO.120、121、122所示序列;(21)所述CDR1、CDR2和CDR3分别如SEQ ID NO.123、124、125所示序列;(22)所述CDR1、CDR2和CDR3分别如SEQ ID NO.126、127、128所示序列;(23)所述CDR1、CDR2和CDR3分别如SEQ ID NO.129、130、131所示序列;(24)所述CDR1、CDR2和CDR3分别如SEQ ID NO.132、133、134所示序列;(25)所述CDR1、CDR2和CDR3分别如SEQ ID NO.135、136、137所示序列;(26)所述CDR1、CDR2和CDR3分别如SEQ ID NO.138、139、140所示序列;(27)所述CDR1、CDR2和CDR3分别如SEQ ID NO.141、142、143所示序列;(28)所述CDR1、CDR2和CDR3分别如SEQ ID NO.144、145、146所示序列;(29)所述CDR1、CDR2和CDR3分别如SEQ ID NO.147、148、149所示序列;(30)所述CDR1、CDR2和CDR3分别如SEQ ID NO.150、151、152所示序列;(31)所述CDR1、CDR2和CDR3分别如SEQ ID NO.153、154、155所示序列;(32)所述CDR1、CDR2和CDR3分别如SEQ ID NO.156、157、158所示序列;(33)所述CDR1、CDR2和CDR3分别如SEQ ID NO.159、160、161所示序列;(34)所述CDR1、CDR2和CDR3分别如SEQ ID NO.162、163、164所示序列;(35)所述CDR1、CDR2和CDR3分别如SEQ ID NO.165、166、167所示序列;(36)所述CDR1、CDR2和CDR3分别如SEQ ID NO.168、169、170所示序列;(37)所述CDR1、CDR2和CDR3分别如SEQ ID NO.171、172、173所示序列;(38)所述CDR1、CDR2和CDR3分别如SEQ ID NO.174、175、176所示序列;(39)所述CDR1、CDR2和CDR3分别如SEQ ID NO.177、178、179所示序列;(40)所述CDR1、CDR2和CDR3分别如SEQ ID NO.180、181、182所示序列;(41)所述CDR1、CDR2和CDR3分别如SEQ ID NO.183、184、185所示序列;(42)所述CDR1、CDR2和CDR3分别如SEQ ID NO.186、187、188所示序列;(43)所述CDR1、CDR2和CDR3分别如SEQ ID NO.189、190、191所示序列;(44)所述CDR1、CDR2和CDR3分别如SEQ ID NO.192、193、194所示序列;(45)所述CDR1、CDR2和CDR3分别如SEQ ID NO.195、196、197所示序列;(46)所述CDR1、CDR2和CDR3分别如SEQ ID NO.198、199、200所示序列;(47)所述CDR1、CDR2和CDR3分别如SEQ ID NO.201、202、203所示序列;(48)所述CDR1、CDR2和CDR3分别如SEQ ID NO.204、205、206所示序列;(49)所述CDR1、CDR2和CDR3分别如SEQ ID NO.207、208、209所示序列;(50)所述CDR1、CDR2和CDR3分别如SEQ ID NO.210、211、212所示序列;(51)所述CDR1、CDR2和CDR3分别如SEQ ID NO.213、214、215所示序列;(52)所述CDR1、CDR2和CDR3分别如SEQ ID NO.216、217、218所示序列;(53)所述CDR1、CDR2和CDR3分别如SEQ ID NO.219、220、221所示序列;(54)所述CDR1、CDR2和CDR3分别如SEQ ID NO.222、223、224所示序列;(55)所述CDR1、CDR2和CDR3分别如SEQ ID NO.225、226、227所示序列;(56)所述CDR1、CDR2和CDR3分别如SEQ ID NO.228、229、230所示序列;(57)所述CDR1、CDR2和CDR3分别如SEQ ID NO.231、232、233所示序列;(58)所述CDR1、CDR2和CDR3分别如SEQ ID NO.234、235、236所示序列;(59)所述CDR1、CDR2和CDR3分别如SEQ ID NO.237、238、239所示序列;(60)所述CDR1、CDR2和CDR3分别如SEQ ID NO.240、241、242所示序列;(61)所述CDR1、CDR2和CDR3分别如SEQ ID NO.243、244、245所示序列;(62)所述CDR1、CDR2和CDR3分别如SEQ ID NO.246、247、248所示序列;(63)所述CDR1、CDR2和CDR3分别如SEQ ID NO.249、250、251所示序列;(64)所述CDR1、CDR2和CDR3分别如SEQ ID NO.252、253、254所示序列;(65)所述CDR1、CDR2和CDR3分别如SEQ ID NO.255、256、257所示序列;(66)所述CDR1、CDR2和CDR3分别如SEQ ID NO.258、259、260所示序列;或,(67)所述CDR1、CDR2和CDR3为具有与上述(1)-(66)序列组合相比具有1、2、 3或更多个氨基酸插入、缺失和/或替换的序列组合;优选为替换,更优选为保守氨基酸残基的替换。
- 权利要求1-2任一项所述的纳米抗体或抗原结合片段,其特征在于,所述的纳米抗体或抗原结合片段包含:(1)可变区具有SEQ ID NO:19、21、23、25、27、29、31、33、35、37、39、41、43、45、47、49、51、53、55、57、59或61所示序列;(2)与上述(1)所示序列具有至少90%同一性的氨基酸序列,优选为至少91%、92%、93%、94%、95%、96%、97%、98%、99%同一性;或,(3)所述纳米抗体或抗原结合片段的框架区与SEQ ID NO:19、21、23、25、27、29、31、33、35、37、39、41、43、45、47、49、51、53、55、57、59或61所示氨基酸序列的框架区具有至少90%同一性,优选为至少91%、92%、93%、94%、95%、96%、97%、98%、99%同一性。
- 权利要求1-3任一项所述的纳米抗体或抗原结合片段,其特征在于,其与人EGFR及EGFRvⅢ结合的解离常数(KD)不大于10 -7nM,与食蟹猴EGFR结合的解离常数(KD)不大于10 -8nM;可选地,所述纳米抗体或抗原结合片段与猴EGFR蛋白结合或不结合;可选地,所述纳米抗体或抗原结合片段与鼠EGFR蛋白结合或不结合;可选地,所述纳米抗体或抗原结合片段与C225或7D12抗体不竞争。
- 权利要求1-4任一项所述的纳米抗体或抗原结合片段,其特征在于,所述抗体或抗原结合片段包含抗体IgG1、IgG2、IgG3、IgG4、IgA、IgM、IgE或IgD任何其中之一恒定区的序列;优选包含抗体IgG1、IgG2、IgG3或IgG4的恒定区的序列。
- 权利要求1-5任一项所述的纳米抗体或抗原结合片段,其特征在于,所述抗体或抗原结合片段进一步包含不存在CH1片段的抗体恒定区序列。
- 权利要求1-5任一项所述的纳米抗体或抗原结合片段,其特征在于,所述抗体或抗原结合片段进一步包含具有CH2和CH3片段的抗体恒定区序列,或,所述抗体或抗原结合片段进一步包含抗体Fc区;所述抗体恒定区或抗体Fc区通过或不通过连接肽连接所述抗体或抗原结合片段;可选地,所述抗体恒定区或抗体Fc区来自骆驼科、小鼠、大鼠、兔、羊或人;可选地,所述抗体恒定区或抗体Fc区来自IgG、IgA、IgM、IgD或IgE。
- 权利要求1-7任一项所述的纳米抗体或抗原结合片段,其特征在于,所述抗体或抗原结合片段为:(1)嵌合抗体或其片段;(2)人源化抗体或其片段;或,(3)全人源抗体或其片段;优选地,所述抗体或抗原结合片段选自单克隆抗体、多克隆抗体、天然抗体、工程化抗体、单特异性抗体、多特异性抗体(例如双特异性抗体)、单价抗体、多价抗体、全长抗体、抗体片段、裸抗体、缀合抗体、人源化抗体、全人抗体、Fab、Fab’、F(ab’)2、Fd、Fv、scFv、双抗体(diabody)或单域抗体。
- 根据权利要求1~8任一项所述的纳米抗体或抗原结合片段,其特征在于,所述纳米抗体或抗原结合片段进一步还偶联有治疗剂或示踪剂;优选地,所述治疗剂选自放射性同位素、化疗药或免疫调节剂,所述示踪剂选自放射学造影剂、顺磁离子、金属、荧光标记、化学发光标记、超声造影剂或光敏剂。
- 一种多特异性抗原结合分子,其特征在于,所述多特异性抗原结合分子包含第一抗原结合模块和第二抗原结合模块,所述第一抗原结合模块包含权利要求1~9任一项所述的纳米抗体或抗原结合片段,所述第二抗原结合模块特异性结合EGFR以外的其他抗原或结合与第一抗原结合模块不同的EGFR抗原表位;优选地,所述其他抗原选自CD3、PD-1、PD-L1、Her2、EpCAM、CD16、CD20、CD30、CD33、CD47、CD52、CD64、CD133、CEA、gpA33、Mucins、TAG-72、CIX、PSMA、folate-结合蛋白、GD2、GD3、GM2、VEGF、VEGFR、Integrin、αVβ3、α5β1、ERBB2、ERBB3、MET、IGF1R、EPHA3、TRAILR1、TRAILR2、RANKL或FAP;优选地,所述多特异性抗体为双特异性抗体、三特异性抗体或四特异性抗体。
- 一种嵌合抗原受体(CAR),其特征在于,所述嵌合抗原受体至少包含细胞外抗原结合结构域、跨膜结构域和胞内信号传导结构域,所述细胞外抗原结合结构域包含权利要求1~9任一项所述纳米抗体或抗原结合片段。
- 一种免疫效应细胞,其特征在于,所述免疫效应细胞包含权利要求11所述嵌合抗原受体或包含编码权利要求11所述嵌合抗原受体的核酸片段;优选地,所述免疫效应细胞选自T细胞、NK细胞(natural killer cell)、NKT细胞(natural killer cell)、单核细胞、巨噬细胞、树突状细胞或肥大细胞;所述T细胞可选自炎性T细胞、细胞毒性T细胞、调节性T细胞(Treg)或辅助性T细胞;优选地,所述免疫效应细胞为同种异体免疫效应细胞或自体免疫细胞。
- 一种分离的核酸分子,其特征在于,所述核酸分子编码权利要求1-9任一项所述的纳米抗体或抗原结合片段、或其任意组合,权利要求10所述的多特异性抗原结合分子或权利 要求11所述的嵌合抗原受体。
- 包含权利要求13所述分离的核酸分子的表达载体。
- 包含权利要求13所述的分离的核酸分子、或权利要求14所述的表达载体的分离的宿主细胞;优选,所述宿主细胞是真核细胞或原核细胞;更优选,所述宿主细胞来源于哺乳动物细胞、酵母细胞、昆虫细胞、大肠杆菌和/或枯草杆菌;更优选,所述宿主细胞选自HEK293E或CHO细胞。
- 一种制备权利要求1~9任一项所述抗体或抗原结合片段或权利要求10所述多特异性抗原结合分子的方法,其特征在于,在适当的条件下培养权利要求15所述的宿主细胞,并分离抗体或抗原结合片段或多特异性抗原结合分子。
- 一种制备权利要求12所述免疫效应细胞的方法,其特征在于,所述方法包括将编码权利要求11所述的嵌合抗原受体的核酸片段导入免疫效应细胞,可选地,所述方法还包括启动所述免疫效应细胞表达权利要求11所述的嵌合抗原受体。
- 一种药物组合物,其特征在于,所述组合物包含权利要求1-9任一项所述的抗体或抗原结合片段、权利要求10所述的多特异性抗原结合分子、权利要求11所述的嵌合抗原受体、权利要求12所述的免疫效应细胞、权利要求13所述的分离的核酸分子、权利要求14所述的表达载体、权利要求15所述的宿主细胞,或权利要求16或17所述方法制备的产品;优选,所述组合物还包含药学上可接受的运载体(carrier)、稀释剂或助剂;优选,所述药物组合物还包含额外的抗肿瘤剂。
- 权利要求1-9任一项所述的抗体或抗原结合片段、权利要求10所述的多特异性抗原结合分子、权利要求11所述的嵌合抗原受体、权利要求12所述的免疫效应细胞、权利要求13所述的分离的核酸分子、权利要求14所述的表达载体、权利要求15所述的宿主细胞,或权利要求16或17所述方法制备的产品、或权利要求18所述的药物组合物在制备预防和/或治疗肿瘤疾病或炎性疾病的药物中的用途;优选地,所述肿瘤疾病或炎性疾病为EGFR过度表达的肿瘤疾病或炎性疾病;更优选地,所述肿瘤疾病优选神经胶质瘤、黑素瘤、胶质母细胞瘤、肉瘤、脑瘤、非小细胞肺癌、膀胱癌、乳腺癌、子宫内膜癌、肺癌、卵巢癌、前列腺癌、结肠癌、胃癌、肝癌、肾癌、脑癌、喉癌、直肠癌、胰腺癌、头颈癌、食管腺癌、食管鳞状细胞癌、实体瘤、非霍奇金淋巴瘤、甲状腺癌、鼻咽癌、食道癌或皮肤癌;所述炎性疾病优选炎症性关节炎、牛皮癣、银屑病、类风湿性关节炎、椎关节病变、接触性皮炎、迟发型过敏反应、子宫内膜异位、瘢痕形成、良性前列腺增生、湿疹、皮肤炎、神经发炎、肝病及肾炎、肠胃疾病、发炎性肠病、克隆氏病或胃炎。
- 一种预防和/或治疗肿瘤疾病或炎性疾病的方法,包含向有此需要的患者施用有效量的权利要求1-9任一项所述的抗体或抗原结合片段、权利要求10所述的多特异性抗原结合分子、权利要求11所述的嵌合抗原受体、权利要求12所述的免疫效应细胞、权利要求13所述的分离的核酸分子、权利要求14所述的表达载体、权利要求15所述的宿主细胞,或权利要求16或17所述方法制备的产品、或权利要求18所述的药物组合物;优选地,所述肿瘤疾病或炎性疾病为EGFR过度表达的肿瘤疾病或炎性疾病;更优选地,所述肿瘤疾病优选神经胶质瘤、黑素瘤、胶质母细胞瘤、肉瘤、脑瘤、非小细胞肺癌、膀胱癌、乳腺癌、子宫内膜癌、肺癌、卵巢癌、前列腺癌、结肠癌、胃癌、肝癌、肾癌、脑癌、喉癌、直肠癌、胰腺癌、头颈癌、食管腺癌、食管鳞状细胞癌、实体瘤、非霍奇金淋巴瘤、甲状腺癌、鼻咽癌、食道癌或皮肤癌;所述炎性疾病优选炎症性关节炎、牛皮癣、银屑病、类风湿性关节炎、椎关节病变、接触性皮炎、迟发型过敏反应、子宫内膜异位、瘢痕形成、良性前列腺增生、湿疹、皮肤炎、神经发炎、肝病及肾炎、肠胃疾病、发炎性肠病、克隆氏病或胃炎。
- 权利要求1-9任一项所述的抗体或抗原结合片段、权利要求10所述的多特异性抗原结合分子、权利要求11所述的嵌合抗原受体、权利要求12所述的免疫效应细胞、权利要求13所述的分离的核酸分子、权利要求14所述的表达载体、权利要求15所述的宿主细胞,或权利要求16或17所述方法制备的产品、或权利要求18所述的药物组合物,其特征在于,用于和/或治疗肿瘤疾病或炎性疾病;优选地,所述肿瘤疾病或炎性疾病为EGFR过度表达的肿瘤疾病或炎性疾病;更优选地,所述肿瘤疾病优选神经胶质瘤、黑素瘤、胶质母细胞瘤、肉瘤、脑瘤、非小细胞肺癌、膀胱癌、乳腺癌、子宫内膜癌、肺癌、卵巢癌、前列腺癌、结肠癌、胃癌、肝癌、肾癌、脑癌、喉癌、直肠癌、胰腺癌、头颈癌、食管腺癌、食管鳞状细胞癌、实体瘤、非霍奇金淋巴瘤、甲状腺癌、鼻咽癌、食道癌或皮肤癌;所述炎性疾病优选炎症性关节炎、牛皮癣、银屑病、类风湿性关节炎、椎关节病变、接触性皮炎、迟发型过敏反应、子宫内膜异位、瘢痕形成、良性前列腺增生、湿疹、皮肤炎、神经发炎、肝病及肾炎、肠胃疾病、发炎性肠病、克隆氏病或胃炎。
- 一种试剂盒,其包含权利要求1-9任一项的抗体或其抗原结合片段、权利要求10所述的多特异性抗原结合分子、权利要求11所述的嵌合抗原受体、权利要求12所述的免疫效应细胞、权利要求13所述的分离的核酸分子、权利要求14所述的表达载体、权利要求15所述的宿主细胞,或权利要求16或17所述方法制备的产品、或权利要求18所述的药物组合物;任选地,还包含使用说明。
Priority Applications (2)
Application Number | Priority Date | Filing Date | Title |
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US18/266,125 US20240101686A1 (en) | 2020-12-09 | 2021-12-08 | Anti-egfr nanobody and use thereof |
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CN114478777A (zh) * | 2022-03-03 | 2022-05-13 | 南京融捷康生物科技有限公司 | 针对gpa33的单域抗体及其衍生蛋白和应用 |
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CN117659194B (zh) * | 2023-11-30 | 2024-08-13 | 科弈(浙江)药业科技有限公司 | 靶向egfr的纳米抗体、药物偶联物及其用途 |
CN117659203B (zh) * | 2023-12-06 | 2024-08-13 | 科弈(浙江)药业科技有限公司 | 一种抗met/egfr双特异性抗体及其药物偶联物 |
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CN114478777B (zh) * | 2022-03-03 | 2023-10-31 | 南京融捷康生物科技有限公司 | 针对gpa33的单域抗体及其衍生蛋白和应用 |
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