WO2020063775A1 - Method for knocking out bnmax1 gene in brassica napus l. using crispr-cas9 system and application - Google Patents

Method for knocking out bnmax1 gene in brassica napus l. using crispr-cas9 system and application Download PDF

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WO2020063775A1
WO2020063775A1 PCT/CN2019/108240 CN2019108240W WO2020063775A1 WO 2020063775 A1 WO2020063775 A1 WO 2020063775A1 CN 2019108240 W CN2019108240 W CN 2019108240W WO 2020063775 A1 WO2020063775 A1 WO 2020063775A1
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bnmax1
gene
cas9
brassica napus
crispr
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华玮
郑明�
张亮
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中国农业科学院油料作物研究所
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  • the invention belongs to the technical field of genetic engineering, and specifically relates to two sgRNAs specifically targeting the BnMAX1 gene of Brassica napus and a method for knocking out the BnMAX1 gene of Brassica napus by using a CRISPR-Cas9 system, which can be used for breeding lodging-resistant and high-yield rape varieties.
  • Brassica napus (Brassica napus L.) belongs to Brassicaceae Brassica and is the second largest oil crop in the world in total production. It is also one of the most important oil crops in China. Its rapeseed oil accounts for edible vegetable oil in China With half of the supply, China's rapeseed planting area and output rank first in the world, but the yield is lower than in Canada, Australia and other countries.
  • the agronomic traits affecting rape yield mainly include plant height, effective branch number, branch position and flowering time.
  • the number of branches is one of the important plant-type traits related to crop yield. In rapeseed, increasing the number of branches per plant can significantly increase the number of pods in the whole plant, thereby increasing the yield of the individual plants.
  • Plant height is also an important plant type trait of a crop. Properly reducing the plant height can improve the lodging resistance of the crop, increase yield and facilitate mechanized harvesting.
  • the dwarf gene has achieved great success in the "green revolution” in rice and wheat. Rape dwarf traits are extremely important for lodging resistance and improving yield.
  • CRISPR-Cas9 was originally a defense system for bacteria and archaea to respond to the invasion of foreign viruses. Now it has been widely used in the genetic modification of human cells, mice, zebrafish, rice, etc. It is mainly composed of two elements: the guide sequence sgRNA and Cas9 nuclease. SgRNA can recognize specific sequences in the genome through base complementation, and guide Cas9 nuclease to cut its DNA double strand, resulting in double-strand break (DSB). Homologous recombination (HR) or non-homologous recombination (NHEJ) for DNA repair. This imprecise repair method can generate site-directed mutations of genes, cause gene silencing, and complete targeting. Because the splicing of DNA depends on the pairing of sgRNA with specific sequences in the genome, designing specific targeted sgRNA is the key to avoiding off-target effects.
  • HR homologous recombination
  • NHEJ non-homologous re
  • CRISPR technology is a useful tool for gene function research, it can also be used for gene editing to improve crops.
  • polyploid crops such as wheat and rape
  • the genes are copied in each sub-genome, which greatly improves CRISPR-Cas9.
  • the difficulty of target shooting is only successful if these homologous copies are silenced together. Therefore, higher requirements are imposed on the design of sgRNA: for example, it is necessary to design or concatenate sgRNA target sites in conserved regions of all homologous genes.
  • the purpose of the present invention is to provide two sgRNAs that specifically target the BnMAX1 gene of Brassica napus.
  • the two sgRNAs are designed in the first exon of the gene, and each sgRNA can mediate A and CRISPR through the CRISPR-cas9 system.
  • the BnMAX1 gene is cut in the C genome to achieve the purpose of gene knockout.
  • Another object of the present invention is to provide a method for knocking out the BnMAX1 gene of Brassica napus using the CRISPR-Cas9 system and its application.
  • a BnMAX1 gene knockout vector can be quickly constructed.
  • the mutant strain of BnMAX1 gene knockout obtained by screening can be used for improving rape traits.
  • a method for specifically knocking out the BnMAX1 gene of Brassica napus using the CRISPR-Cas9 system includes the following steps:
  • the upstream and downstream nucleotide sequences of the primers for the identification of the A chromosome copy are shown in SEQ ID NO.7 and SEQ ID NO.8, C
  • the upstream and downstream nucleotide sequences of chromosome copy identification primers are shown in SEQ ID NO. 9 and SEQ ID NO. 10;
  • the above method was used to specifically knock out the BnMAX1 gene in Brassica napus to obtain BnMAX1 protein loss-of-function mutation plants. Based on this, further screening of single plants without screening markers was carried out. Phenotypic identification and character inspection showed that homozygous mutant lines The number of branches increased significantly, and the plant height also decreased significantly. The number of fruit per plant and yield increased significantly, which could be used to improve rape traits.
  • the present invention utilizes the CRISPR-Cas9 system to knock out two copies of the BnMAX1 gene of Brassica napus, and selects two target fragments in the conserved region of the first exon of the two copies of the BnMAX1 gene of Brassica napus and constructs BnMAX1-Cas9 plants respectively.
  • the expression vector was introduced into the hypocotyl of Brassica napus by Agrobacterium infection and regenerated shoots. Under the combined action of two kinds of sgRNA and Cas9 nuclease, both copies of BnMAX1 gene were doubled. Chain shearing, through the cell's own repair function, finally achieves random insertion or random deletion on the target gene fragment, and completes gene knockout.
  • the present invention has the following advantages and beneficial effects:
  • the present invention can quickly obtain a CRISPR-Cas9 knockout vector of a target gene through an oligo DNA sequence designed based on sgRNA and a commercial CRISPR-Cas9 vector, simplifying the construction steps and speeding up the research process.
  • Phenotypic identification and character inspection of the homozygous mutant Brassica napus strains obtained by the present invention show that the number of branches of the strain is significantly increased, the plant height is also significantly reduced, and yield traits such as the number of carobs and yield per plant are significantly increased.
  • the invention provides an efficient breeding method, germplasm resources and theoretical technical support for cultivating high-yield and lodging-resistant rapeseed varieties.
  • FIG. 3 Schematic of BnMAX1-Cas9-1 and BnMAX1-Cas9-2 vectors
  • Figure 4 Nucleotide sequence of the A03 site of the T0 mutant of the BnMAX1-Cas9-1 transformed plant
  • FIG. 6 BnMAX1-Cas9-1 nucleotide sequence of the C03 locus of the single mutant of the T0 generation
  • Figure 7 BnMAX1-Cas9-1 Sequencing peak of the C03 locus of a single mutation in the T0 generation
  • FIG. 8 BnMAX1-Cas9-2 nucleotide sequence of the A03 locus of the mutant T0 plant
  • Figure 10 BnMAX1-Cas9-2 nucleotide sequence of the C03 locus of a mutant plant in the T0 generation
  • the instruments, reagents, materials, etc. involved in the following experimental examples are conventional instruments, reagents, materials, etc. in the prior art unless otherwise specified, and can be obtained through formal commercial channels. Unless otherwise specified, the test methods and detection methods in the following experimental examples are conventional test methods and detection methods in the prior art.
  • Experimental example 1 sgRNA design of BnMAX1 gene CRISPR-Cas9 in Brassica napus and construction of vectors BnMAX1-Cas9-1 and BnMAX1-Cas9-2
  • Brassica napus is a tetraploid crop with two sets of genomes, A and C.
  • the BnMAX1 gene has one copy in each of the two sets of genomes. The two copies were sequenced, and a protoadjacent motif (NGG) motif (NGG) was searched in the conserved region.
  • a 20 bp sequence at the 5 'end of the PAM position was the sgRNA sequence.
  • two sgRNAs are designed, the sequences of which are shown in SEQ ID NO.1 and SEQ ID NO.2, and both are located in the first exon, and the target sites are shown in Figs.
  • the CRISPR-Cas9 vector construction kit used in the present invention was purchased from Hangzhou Baige Biotechnology Co., Ltd. (Cat # BGK01). Therefore, when designing Oligo DNA single strand, it was synthesized according to the kit instructions:
  • the two pairs of Oligo DNA single-stranded sequences of the present invention are shown in SEQ ID No. 3, SEQ ID No. 4 and SEQ ID No. 5, SEQ ID No. 6, and were synthesized by Wuhan Qingke Biotechnology Co., Ltd.
  • the synthesized two pairs of Oligo DNA were dissolved in water to 10 ⁇ M, mixed according to the following reaction systems, heated at 95 ° C. for 3 minutes using a PCR instrument, and then slowly reduced to 20 ° C. at a rate of about 0.2 ° C./sec.
  • Oilo dimer The two groups of Oilo dimer were mixed with each component on ice according to the following reaction system. After mixing, the mixture was reacted at room temperature (20 ° C) for 1 hour.
  • BnMAX1-Cas9-1 and BnMAX1-Cas9-2 Agrobacterium broth were mixed with 50% glycerol and stored at -80 ° C.
  • the activated bacterial solution was connected to 20 ml of LB liquid medium containing kanamycin, gentamicin and rifampicin, and cultured at 28 ° C and 200 rpm until the OD600 value reached 0.4-0.8. Collect the bacterial cells with a centrifuge at 2000 rpm, then add 20 ml of DM medium containing 100 ⁇ M AS, resuspend, and shake at 28 ° C for 30 minutes; (4) add the Agrobacterium bacterium solution after DM medium has been cultured for 30 minutes to the cut In a good hypocotyl, infect for 30 minutes, shaking every five minutes or so;
  • the two-day co-cultured explants were transferred to M2 medium containing 5mg / L hygromycin and cultured for about 3 weeks under light. At this time, you can see that the explants became darker and began to swell into callus. The explants were then transferred to M3 medium containing 8 mg / L hygromycin and cultured in a light incubator at a light length of 16 h / d. Subculture was carried out every two weeks to ensure adequate nutrition until seedlings could be differentiated.
  • the medium formulation used in this experiment is shown in Table 1.
  • the CT0 method was used to extract the DNA of the transgenic T0 generation plants. Among them, 11 T0 generation plants were obtained from BnMAX1-Cas9-1, and 6 T0 generation plants were obtained from BnMAX1-Cas9-2. PCR amplification was used to detect the transformed plants. Primers used It is: Hyg-120-F: 5'-TGTAGGAGGGCGTGGATATG-3 ', Hyg-971-R: 5'-ACTTCTACACAGCCATCGGT-3', and it is tested whether the TO 0-transformed plants contain a hygromycin selection marker.
  • the T vector is ligated, and the sequence of two copies of the BnMAX1 gene of the BnMAX1-Cas9-1 and BnMAX1-Cas9-2 transformed plants is tested. Sequencing results showed that 5 of the 11 BnMAX1-Cas9-1 transformed plants had insertions or mutations at the A03 site, and 4 had insertions or mutations at the C03 site.
  • the nucleotide sequences of the A03 and C03 sites are shown in Figure 4. As shown in Figure 6, the sequencing peaks are shown in Figures 5 and 7.
  • PCR tests using A03-JC-F / R and C03-JC-F / R primers revealed that all phenotypic mutations were homozygous, that is, two copies of the BnMAX1 gene on the A and C genomes were knocked out except.
  • hygromycin was used to identify primers Hyg-120-F: 5'-TGTAGGAGGGCGTGGATATG-3'Hyg-971-R: 5'-ACTTCTACACAGCCATCGGT-3 'to Tn generation of BnMAX1-Cas9-1-8 and BnMAX1 -Isolation and identification of hygromycin in T1 generation of Cas9-2-2, used to screen for the two copies of the BnMAX1 gene on the A and C genomes that were knocked out and did not have hygromycin resistance.
  • This single plant can be directly used for production because it has no screening resistance marker.
  • the T2 generation was continued for character investigation and statistics: 20 BnMAX1-Cas9-1-8 homozygous mutant single plants were planted, and the transformed parent 862 was planted at the same time.
  • the phenotype is shown in Figure 13.
  • the statistical characteristics are as follows: the number of branches and the height of the plant.
  • the statistical characteristics are as follows: the number of horns per plant, the length of the horns and the number of horns.
  • the statistics are as follows: Plant yield and thousand kernel weight. Calculate the average value, and the statistical results are shown in Table 2.
  • the mutant transformant BnMAX1-Cas9-1-8 has a significantly reduced plant height and a significantly increased number of branches compared to its parent. At the same time, the number of carobs and yield per plant have also increased significantly. .
  • the results of seed copying prove that the present invention obtains a functional mutant strain by using the CRISPR / Cas9 system to knock out the BnMAX1 gene of Brassica napus, which can reduce the height of rapeseed and increase the yield at the same time, and provides excellent germplasm for high yield and lodging resistance of rapeseed. Resources and efficient breeding methods and theoretical technical support.

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Abstract

Provided are a method for knocking out BnMAX1 gene in Brassica napus L. using CRISPR-Cas9 system and an application, two sgRNAs of specifically targeting Brassica napus L. BnMAX1 gene are designed and synthesized into oligo dimer, which are connected with Cas9 carrier and introduced into hypocotyl callus of Brassica napus L. by Agrobacterium-mediated genetic transformation technology to regenerate into shoots, Cas9 nuclease cleaves target sequence under the guidance of sgRNA, each sgRNA can mediate the cleavage of the BnMAX1 gene on the A and C genomes through the CRISPR-cas9 system, achieving the purpose of knocking out gene. Phenotypic identification shows that homozygous mutant lines increase the number of branches and pod number per plant, decrease plant height and increase yield.

Description

利用CRISPR-Cas9系统敲除甘蓝型油菜BnMAX1基因的方法及应用Method and application of using CRISPR-Cas9 system to knock out BnMAX1 gene of Brassica napus 技术领域Technical field
本发明属于基因工程技术领域,具体涉及两种特异性靶向甘蓝型油菜BnMAX1基因的sgRNA以及利用CRISPR-Cas9系统敲除甘蓝型油菜BnMAX1基因的方法,可用于培育抗倒伏、高产的油菜品种。The invention belongs to the technical field of genetic engineering, and specifically relates to two sgRNAs specifically targeting the BnMAX1 gene of Brassica napus and a method for knocking out the BnMAX1 gene of Brassica napus by using a CRISPR-Cas9 system, which can be used for breeding lodging-resistant and high-yield rape varieties.
背景技术Background technique
甘蓝型油菜(Brassica napus L.)属于十字花科芸薹属,是全球总产量居于第二位的大宗油料作物,也是我国最重要的油料作物之一,其生产的菜籽油占我国食用植物油供给的一半,我国油菜种植面积和产量均居世界第一,然而单产低于加拿大、澳大利亚等国家。影响油菜产量的农艺性状主要有株高、有效分枝数、分枝部位以及开花时间等。分枝数是农作物产量相关的重要株型性状之一,在油菜中,增加单株分枝数可显著增加全株角果数,进而提高单株产量,同时研究发现油菜分枝数与种子产量呈极显著正相关。株高也是作物重要的株型性状,适当降低株高可以提高作物的抗倒伏能力,提高产量和利于机械化收获。矮秆基因已经在水稻和小麦种取得了“绿色革命”的巨大成功。油菜矮秆性状对于抗倒伏和提高产量具有极其重要的意义。Brassica napus (Brassica napus L.) belongs to Brassicaceae Brassica and is the second largest oil crop in the world in total production. It is also one of the most important oil crops in China. Its rapeseed oil accounts for edible vegetable oil in China With half of the supply, China's rapeseed planting area and output rank first in the world, but the yield is lower than in Canada, Australia and other countries. The agronomic traits affecting rape yield mainly include plant height, effective branch number, branch position and flowering time. The number of branches is one of the important plant-type traits related to crop yield. In rapeseed, increasing the number of branches per plant can significantly increase the number of pods in the whole plant, thereby increasing the yield of the individual plants. There was a very significant positive correlation. Plant height is also an important plant type trait of a crop. Properly reducing the plant height can improve the lodging resistance of the crop, increase yield and facilitate mechanized harvesting. The dwarf gene has achieved great success in the "green revolution" in rice and wheat. Rape dwarf traits are extremely important for lodging resistance and improving yield.
传统的杂交育种为我国油菜单位产量的提高起到关键作用,但是也存在着很多制约因素,如制种效率不高,育种耗时长,劳动强度大以及环境影响大等问题,而如今的植物基因组工程技术则为解决这些难题提供了更多更好的选择。Traditional hybrid breeding has played a key role in increasing the yield of oil menu sites in China, but there are also many constraints, such as low seed production efficiency, long breeding time, high labor intensity, and large environmental impacts. Today ’s plant genomes Engineering technology provides more and better options for solving these problems.
CRISPR-Cas9原是细菌和古细菌应对外源病毒入侵的防御系统,现已经广泛的用于人类细胞、小鼠、斑马鱼、水稻等的基因改造。它主要由导向序列sgRNA和Cas9核酸酶两种元件组成,sgRNA可以通过碱基互补识别基因组中特定序列,引导Cas9核酸酶对其DNA双链进行切割,造成双链断裂(DSB),当细胞通过同源重组(HR)或非同源重组(NHEJ)进行DNA修复,这种不精确的修复方式就可以产生基因的定点突变,造成基因沉默,完成打靶。由于对DNA的剪切依赖于sgRNA于基因组特定序列的配对,因而设计特异性的靶向sgRNA是避免脱靶效应的关键。CRISPR-Cas9 was originally a defense system for bacteria and archaea to respond to the invasion of foreign viruses. Now it has been widely used in the genetic modification of human cells, mice, zebrafish, rice, etc. It is mainly composed of two elements: the guide sequence sgRNA and Cas9 nuclease. SgRNA can recognize specific sequences in the genome through base complementation, and guide Cas9 nuclease to cut its DNA double strand, resulting in double-strand break (DSB). Homologous recombination (HR) or non-homologous recombination (NHEJ) for DNA repair. This imprecise repair method can generate site-directed mutations of genes, cause gene silencing, and complete targeting. Because the splicing of DNA depends on the pairing of sgRNA with specific sequences in the genome, designing specific targeted sgRNA is the key to avoiding off-target effects.
虽然CRISPR技术是基因功能研究的利器,也可用于基因编辑以改良农作物, 但如在小麦,油菜等多倍体作物中,由于基因在各亚基因组中都有拷贝,这大大提高了CRISPR-Cas9打靶的难度,只有将这些同源拷贝一并沉默掉,才是一次成功的打靶。因而对sgRNA的设计提出了更高的要求:如必须在所有同源基因的保守区域设计或者设计串联的sgRNA靶标位点。Although CRISPR technology is a useful tool for gene function research, it can also be used for gene editing to improve crops. However, in polyploid crops such as wheat and rape, the genes are copied in each sub-genome, which greatly improves CRISPR-Cas9. The difficulty of target shooting is only successful if these homologous copies are silenced together. Therefore, higher requirements are imposed on the design of sgRNA: for example, it is necessary to design or concatenate sgRNA target sites in conserved regions of all homologous genes.
发明内容Summary of the Invention
本发明的目的在于提供了两种特异性靶向甘蓝型油菜BnMAX1基因的sgRNA,两种sgRNA设计于该基因的第一外显子中,每条sgRNA都能通过CRISPR-cas9系统介导A和C基因组上BnMAX1基因的剪切,达到基因敲除的目的。The purpose of the present invention is to provide two sgRNAs that specifically target the BnMAX1 gene of Brassica napus. The two sgRNAs are designed in the first exon of the gene, and each sgRNA can mediate A and CRISPR through the CRISPR-cas9 system. The BnMAX1 gene is cut in the C genome to achieve the purpose of gene knockout.
本发明的另一个目的在于提供了一种利用CRISPR-Cas9系统敲除甘蓝型油菜BnMAX1基因的方法及其应用,通过设计oligo DNA序列和商业化CRISPR-Cas9载体,能够快速构建BnMAX1基因敲除载体,通过农杆菌介导的遗传转化,筛选获得的BnMAX1基因敲除的突变株可用于油菜性状改良。Another object of the present invention is to provide a method for knocking out the BnMAX1 gene of Brassica napus using the CRISPR-Cas9 system and its application. By designing an oligo DNA sequence and a commercial CRISPR-Cas9 vector, a BnMAX1 gene knockout vector can be quickly constructed. Through genetic transformation mediated by Agrobacterium, the mutant strain of BnMAX1 gene knockout obtained by screening can be used for improving rape traits.
为了实现上述目的,本发明采用以下技术方案:In order to achieve the above objective, the present invention adopts the following technical solutions:
利用CRISPR-Cas9系统特异性敲除甘蓝型油菜BnMAX1基因的方法,该方法包括以下步骤:A method for specifically knocking out the BnMAX1 gene of Brassica napus using the CRISPR-Cas9 system. The method includes the following steps:
(1)根据BnMAX1基因两个拷贝的保守区域设计了两个sgRNA的DNA序列,两个sgRNA都位于BnMAX1基因两个拷贝的第一外显子上,如SEQ ID NO.1和SEQ ID NO.2所示;(1) Based on the conserved regions of two copies of the BnMAX1 gene, the DNA sequences of two sgRNAs were designed. Both sgRNAs were located on the first exon of two copies of the BnMAX1 gene, such as SEQ ID NO.1 and SEQ ID NO. 2 shown;
(2)根据sgRNA序列和商业化CRISPR-Cas9载体要求,设计合成两对单链oligo DNA序列,其序列分别如SEQ ID NO.3、SEQ ID NO.4和SEQ ID NO.5、SEQ ID NO.6所示;(2) According to the sgRNA sequence and commercial CRISPR-Cas9 vector requirements, design and synthesize two pairs of single-stranded oligo DNA sequences, the sequences of which are shown in SEQ ID NO. 3, SEQ ID NO. 4 and SEQ ID NO. 5, SEQ ID ID NO .6;
(3)将两对单链oligo DNA退火形成双链,分别制成Oligo二聚体;(3) Two pairs of single-stranded oligo DNA are annealed to form double-strands, and are made into Oligo dimers;
(4)将制备好的Oligo二聚体与商业化CRISPR-Cas9载体连接,然后转化大肠杆菌DH5α,获得两种植物表达载体,分别命名为BnMAX1-Cas9-1和BnMAX1-Cas9-2;(4) ligating the prepared Oligo dimer with a commercial CRISPR-Cas9 vector, and then transforming E. coli DH5α to obtain two plant expression vectors, named BnMAX1-Cas9-1 and BnMAX1-Cas9-2, respectively;
(5)使用农杆菌介导的方式将BnMAX1-Cas9-1或BnMAX1-Cas9-2载体转化到甘蓝型油菜(比如甘蓝型春油菜862、甘蓝型冬油菜中双6号)中,在转基因后代中筛选A染色体和C染色体均发生BnMAX1基因突变的植株;(5) Agrobacterium-mediated transformation of the BnMAX1-Cas9-1 or BnMAX1-Cas9-2 vector into Brassica napus (such as Kale spring rape 862 and Kale winter rape Zhongzhong 6), in the transgenic offspring Screening of plants with BnMAX1 gene mutations in both A and C chromosomes;
分别用于检测BnMAX1基因在A和C染色体组上的两个拷贝的突变方式:A染色体拷贝的鉴定引物的上下游核苷酸序列如SEQ ID NO.7和SEQ ID NO.8所示,C染色体拷贝的鉴定引物的上下游核苷酸序列如SEQ ID NO.9和SEQ ID NO.10所示;Used to detect the mutations of the two copies of the BnMAX1 gene on the A and C chromosomes: the upstream and downstream nucleotide sequences of the primers for the identification of the A chromosome copy are shown in SEQ ID NO.7 and SEQ ID NO.8, C The upstream and downstream nucleotide sequences of chromosome copy identification primers are shown in SEQ ID NO. 9 and SEQ ID NO. 10;
(6)根据鉴定引物的扩增结果判定BnMAX1基因两个拷贝是否被成功敲除,选择BnMAX1蛋白功能缺失突变的植株。(6) Determine whether the two copies of the BnMAX1 gene were successfully knocked out based on the amplification results of the identified primers, and select plants with functional mutations in the BnMAX1 protein.
采用上述方法在甘蓝型油菜中特异性敲除BnMAX1基因,获得BnMAX1蛋白功能缺失突变的植株,在此基础上进一步筛选无筛选标记的单株,经表型鉴定与性状考察表明纯合突变株系分枝数显著增多,株高也明显降低,单株角果数、产量都明显增多,可用于改良油菜性状。The above method was used to specifically knock out the BnMAX1 gene in Brassica napus to obtain BnMAX1 protein loss-of-function mutation plants. Based on this, further screening of single plants without screening markers was carried out. Phenotypic identification and character inspection showed that homozygous mutant lines The number of branches increased significantly, and the plant height also decreased significantly. The number of fruit per plant and yield increased significantly, which could be used to improve rape traits.
本发明利用CRISPR-Cas9系统定点敲除甘蓝型油菜BnMAX1基因的两个拷贝,在甘蓝型油菜BnMAX1基因两个拷贝的第一个外显子保守区域选取2个靶标片段并分别构建BnMAX1-Cas9植物表达载体,通过农杆菌侵染的方法导入到甘蓝型油菜下胚轴愈伤并再生成苗,在两种sgRNA分别和Cas9核酸酶的共同作用下,都对BnMAX1基因两个拷贝都进行了双链剪切,通过细胞自身修复功能,最终实现了靶标基因片段上的随机插入或随机缺失,完成了基因敲除。The present invention utilizes the CRISPR-Cas9 system to knock out two copies of the BnMAX1 gene of Brassica napus, and selects two target fragments in the conserved region of the first exon of the two copies of the BnMAX1 gene of Brassica napus and constructs BnMAX1-Cas9 plants respectively. The expression vector was introduced into the hypocotyl of Brassica napus by Agrobacterium infection and regenerated shoots. Under the combined action of two kinds of sgRNA and Cas9 nuclease, both copies of BnMAX1 gene were doubled. Chain shearing, through the cell's own repair function, finally achieves random insertion or random deletion on the target gene fragment, and completes gene knockout.
与现有技术相比,本发明具有以下优点及有益效果:Compared with the prior art, the present invention has the following advantages and beneficial effects:
本发明通过根据sgRNA设计的oligo DNA序列和商业化CRISPR-Cas9载体能快速获得目标基因的CRISPR-Cas9敲除载体,简化构建步骤,加快了研究进程。The present invention can quickly obtain a CRISPR-Cas9 knockout vector of a target gene through an oligo DNA sequence designed based on sgRNA and a commercial CRISPR-Cas9 vector, simplifying the construction steps and speeding up the research process.
本发明获得的纯合突变甘蓝型油菜株系,表型鉴定与性状考察表明该株系分枝数显著增多,株高也明显降低,单株角果数、产量等产量性状都明显增多。本发明为培育高产、抗倒伏油菜品种提供了高效的育种方法、种质资源与理论技术支持。Phenotypic identification and character inspection of the homozygous mutant Brassica napus strains obtained by the present invention show that the number of branches of the strain is significantly increased, the plant height is also significantly reduced, and yield traits such as the number of carobs and yield per plant are significantly increased. The invention provides an efficient breeding method, germplasm resources and theoretical technical support for cultivating high-yield and lodging-resistant rapeseed varieties.
附图说明BRIEF DESCRIPTION OF THE DRAWINGS
图1:BnMAX1-Cas9-1靶标位点Figure 1: BnMAX1-Cas9-1 target site
图2:BnMAX1-Cas9-2靶标位点Figure 2: BnMAX1-Cas9-2 target site
图3:BnMAX1-Cas9-1及BnMAX1-Cas9-2载体示意图Figure 3: Schematic of BnMAX1-Cas9-1 and BnMAX1-Cas9-2 vectors
图4:BnMAX1-Cas9-1转化植株T0代突变单株A03位点核苷酸序列Figure 4: Nucleotide sequence of the A03 site of the T0 mutant of the BnMAX1-Cas9-1 transformed plant
图5:BnMAX1-Cas9-1 T0代有突变单株A03位点测序峰图Figure 5: BnMAX1-Cas9-1 sequencing of the A03 locus of a single mutation in the T0 generation
图6:BnMAX1-Cas9-1 T0代有突变单株C03位点核苷酸序列Figure 6: BnMAX1-Cas9-1 nucleotide sequence of the C03 locus of the single mutant of the T0 generation
图7:BnMAX1-Cas9-1 T0代有突变单株C03位点测序峰图Figure 7: BnMAX1-Cas9-1 Sequencing peak of the C03 locus of a single mutation in the T0 generation
图8:BnMAX1-Cas9-2 T0代有突变单株A03位点核苷酸序列Figure 8: BnMAX1-Cas9-2 nucleotide sequence of the A03 locus of the mutant T0 plant
图9:BnMAX1-Cas9-2 T0代有突变单株A03位点测序峰图Figure 9: BnMAX1-Cas9-2 sequencing of the A03 locus of a single mutation in the T0 generation
图10:BnMAX1-Cas9-2 T0代有突变单株C03位点核苷酸序列Figure 10: BnMAX1-Cas9-2 nucleotide sequence of the C03 locus of a mutant plant in the T0 generation
图11:BnMAX1-Cas9-2 T0代有突变单株C03位点测序峰图Figure 11: BnMAX1-Cas9-2 sequencing of the C03 locus at the T0 generation with a single mutant
图12:无潮霉素抗性BnMAX1-Cas9转化株系突变方式Figure 12: Mutation pattern of hygromycin-resistant BnMAX1-Cas9 transformed lines
图13:BnMAX1-Cas9-1-8转化株系表型Figure 13: Phenotype of BnMAX1-Cas9-1-8 transformed lines
具体实施方式detailed description
下面结合实例对本发明进行详细说明,但不用来限制本发明范围。在不背离本发明构思的前提下,对本发明方法、步骤或条件所做的修改或替换,均属于本发明保护范围。The following describes the present invention in detail with reference to examples, but is not intended to limit the scope of the present invention. Without departing from the concept of the present invention, modifications or replacements made to the methods, steps or conditions of the present invention belong to the protection scope of the present invention.
下述实验例中所涉及的仪器、试剂、材料等,若无特别说明均为现有技术中常规仪器、试剂、材料等,可通过正规商业途径获得。下述实验例中所涉及试验方法、检测方法等,若无特别说明,均为现有技术中已有的常规试验方法、检测方法等。The instruments, reagents, materials, etc. involved in the following experimental examples are conventional instruments, reagents, materials, etc. in the prior art unless otherwise specified, and can be obtained through formal commercial channels. Unless otherwise specified, the test methods and detection methods in the following experimental examples are conventional test methods and detection methods in the prior art.
实验例1:甘蓝型油菜BnMAX1基因CRISPR-Cas9的sgRNA设计与载体BnMAX1-Cas9-1和BnMAX1-Cas9-2的构建Experimental example 1: sgRNA design of BnMAX1 gene CRISPR-Cas9 in Brassica napus and construction of vectors BnMAX1-Cas9-1 and BnMAX1-Cas9-2
1.sgRNA序列确定1.sgRNA sequence determination
甘蓝型油菜为四倍体作物,具有A和C两套基因组,BnMAX1基因在这两套基因组中各有一个拷贝。将这两个拷贝进行序列比对,在保守区域寻找PAM(proto adjacent motif)基序(NGG),在PAM位置5’端20bp的一段序列即为sgRNA序列。本发明设计了两条sgRNA,其序列如SEQ ID NO.1和SEQ ID NO.2所示,且均位于第一外显子中,靶标位点如图1、2所示。Brassica napus is a tetraploid crop with two sets of genomes, A and C. The BnMAX1 gene has one copy in each of the two sets of genomes. The two copies were sequenced, and a protoadjacent motif (NGG) motif (NGG) was searched in the conserved region. A 20 bp sequence at the 5 'end of the PAM position was the sgRNA sequence. In the present invention, two sgRNAs are designed, the sequences of which are shown in SEQ ID NO.1 and SEQ ID NO.2, and both are located in the first exon, and the target sites are shown in Figs.
2.Oligo DNA单链的合成2.Synthesis of Oligo DNA single strand
本发明使用的CRISPR-Cas9载体构建试剂盒购自杭州百格生物科技有限公司(Cat#BGK01),因此在设计Oligo DNA单链时,按照试剂盒说明书要求合成:The CRISPR-Cas9 vector construction kit used in the present invention was purchased from Hangzhou Baige Biotechnology Co., Ltd. (Cat # BGK01). Therefore, when designing Oligo DNA single strand, it was synthesized according to the kit instructions:
UP oligo:5’-TGATTG+sgRNA序列-3’UPoligo: 5’-TGATTG + sgRNA sequence-3 ’
LOW oligo:5’-AAAC+sgRNA反向互补序列+GA-3’LOWoligo: 5’-AAAC + sgRNA reverse complement sequence + GA-3 ’
本发明的两对Oligo DNA单链序列如SEQ ID NO.3、SEQ ID NO.4和SEQ ID NO.5、SEQ ID NO.6所示,交由武汉擎科生物科技有限公司合成。The two pairs of Oligo DNA single-stranded sequences of the present invention are shown in SEQ ID No. 3, SEQ ID No. 4 and SEQ ID No. 5, SEQ ID No. 6, and were synthesized by Wuhan Qingke Biotechnology Co., Ltd.
3.制备Oligo二聚体3. Preparation of Oligo Dimer
将合成的两对Oligo DNA加水溶解至10μM,分别按下列反应体系混合后,使用PCR仪95℃加热3分钟,然后以约0.2℃/秒的速度缓慢降至20℃。The synthesized two pairs of Oligo DNA were dissolved in water to 10 μM, mixed according to the following reaction systems, heated at 95 ° C. for 3 minutes using a PCR instrument, and then slowly reduced to 20 ° C. at a rate of about 0.2 ° C./sec.
Figure PCTCN2019108240-appb-000001
Figure PCTCN2019108240-appb-000001
4.将Oligo二聚体构建至CRISPR-Cas9载体4.Construct Oligo Dimer to CRISPR-Cas9 Vector
两组Oilgo二聚体分别按下列反应体系在冰上混合各个组分,混匀后室温(20℃)反应1小时。The two groups of Oilo dimer were mixed with each component on ice according to the following reaction system. After mixing, the mixture was reacted at room temperature (20 ° C) for 1 hour.
Figure PCTCN2019108240-appb-000002
Figure PCTCN2019108240-appb-000002
5.转化大肠杆菌5. Transformation of E. coli
(1)将二组反应体系各取5μl反应液加到100μl的DH5α感受态细胞中,混匀;(1) Add 5 μl of the reaction solution to each of the two groups of reaction systems to 100 μl of DH5α competent cells and mix well;
(2)冰浴静置30分钟,期间避免晃动,严格保持静置;(2) Allow the ice bath to stand for 30 minutes, avoid shaking during the period, and keep it strictly;
(3)轻轻取出,42℃热激60秒,立即置于冰上2分钟;(3) Take out gently, heat shock at 42 ° C for 60 seconds, and immediately place on ice for 2 minutes;
(4)加入600μl LB液体培养基,37℃200rpm复苏培养1小时;(4) Add 600 μl of LB liquid medium, and resuscitate at 37 ° C and 200 rpm for 1 hour;
(5)取适量菌液涂布于含有卡那霉素的LB平板上,37℃倒置过夜培养。(5) Take an appropriate amount of the bacterial solution and coat it on an LB plate containing kanamycin, and invert and culture at 37 ° C overnight.
6.阳性克隆鉴定与质粒提取6. Identification of positive clones and plasmid extraction
分别挑取两组反应长出来的单克隆,接种于LB液体+Kan的培养基,37℃,200rpm培养过夜后,取一半送至武汉擎科生物技术有限公司,使用载体试剂盒 提供的测序引物cas9-F:5’-CCCAGTCAC GACGTTGTAAA-3’进行测序鉴定。将测序鉴定正确的菌液提取质粒,获得目标载体BnMAX1-Cas9-1和BnMAX1-Cas9-2,载体示意图如图3所示。Pick out two sets of monoclonal antibodies that grow out of the reaction, inoculate in LB liquid + Kan medium, incubate at 37 ° C and 200 rpm overnight, take half of them to Wuhan Qingke Biotechnology Co., Ltd., and use the sequencing primer provided by the vector kit cas9-F: 5'-CCCAGTCAC GACGTTGTAAA-3 'was identified by sequencing. The correct bacterial solution was identified by sequencing to extract plasmids, and the target vectors BnMAX1-Cas9-1 and BnMAX1-Cas9-2 were obtained. The schematic diagram of the vector is shown in FIG. 3.
实验例2:BnMAX1-Cas9-1和BnMAX1-Cas9-2载体转化农杆菌GV3101Experimental example 2: BnMAX1-Cas9-1 and BnMAX1-Cas9-2 vectors transformed Agrobacterium GV3101
分别将5μl BnMAX1-Cas9-1和BnMAX1-Cas9-2 DNA加入到100μl的GV3101农杆菌感受态细胞中,混匀后冰浴5分钟,液氮冷冻1分钟后,37℃水浴5分钟,加入700μl液体LB培养基,28℃,200rpm摇床复苏培养4小时。培养结束后,取适量菌液涂布于含有50mg/L卡那霉素、50mg/L庆大霉素和50mg/L利福平的LB固体平皿上;28℃培养2天,挑取单克隆,接种于含有卡那霉素、庆大霉素和利福平的LB液体培养基,28℃200rpm培养过夜,然后用cas9-F引物和相应Low oligo进行PCR鉴定。Add 5 μl of BnMAX1-Cas9-1 and BnMAX1-Cas9-2 DNA to 100 μl of GV3101 Agrobacterium competent cells, mix well in an ice bath for 5 minutes, freeze with liquid nitrogen for 1 minute, and incubate at 37 ° C for 5 minutes, add 700 μl Liquid LB medium was cultured at 28 ° C. and shaken at 200 rpm for 4 hours. After the end of the culture, take an appropriate amount of the bacterial solution and spread it on an LB solid dish containing 50 mg / L kanamycin, 50 mg / L gentamicin, and 50 mg / L rifampicin; incubate at 28 ° C for 2 days, and select the monoclonal , Inoculated in LB liquid medium containing kanamycin, gentamicin and rifampicin, cultured at 200 rpm at 28 ° C overnight, and then carried out PCR identification with cas9-F primer and corresponding Lowoligo.
鉴定正确的BnMAX1-Cas9-1和BnMAX1-Cas9-2农杆菌菌液与50%甘油混合,-80℃保存。The correct BnMAX1-Cas9-1 and BnMAX1-Cas9-2 Agrobacterium broth were mixed with 50% glycerol and stored at -80 ° C.
实验例3:BnMAX1-Cas9-1和BnMAX1-Cas9-2农杆菌分别转化甘蓝型油菜下胚轴Experimental Example 3: BnMAX1-Cas9-1 and BnMAX1-Cas9-2 Agrobacterium Transformed Brassica napus Hypocotyls
1.外植体准备1. Explant preparation
以甘蓝型春油菜862(实验室收集的春油菜品系)种子和冬油菜栽培种中双6号为材料进行种子表面消毒Seed surface disinfection using spring rape seed 862 (spring rape seed line collected in the laboratory) and winter rape seed cultivar Zhongshuang 6
(1)将种子加入到洁净的50毫升离心管中,用75%酒精浸泡种子5分钟;(1) Add the seeds to a clean 50 ml centrifuge tube and soak the seeds with 75% alcohol for 5 minutes;
(2)倒掉酒精,加入10ml 1.5%升汞,浸泡种子15分钟,期间隔几分钟摇动使液体与种子充分接触;(2) Pour off the alcohol, add 10ml 1.5% liter of mercury, soak the seeds for 15 minutes, and shake them at intervals of several minutes to make the liquid and the seeds fully contact;
(3)倒掉升汞,用灭菌单蒸水清洗种子4次左右;(3) Discard the litre of mercury and wash the seeds about 4 times with sterilized single steam;
(4)用移液枪将剩余的水吸干,用事先灼烧灭菌的镊子将种子摆入M0培养基中,每瓶50粒种子,每个转化各设6瓶种子;(4) Dry the remaining water with a pipette, and place the seeds into the M0 medium with tweezers that have been burned and sterilized beforehand, 50 seeds per bottle, and 6 bottles of seeds for each transformation;
(5)24度,暗培养5-6天。(5) 24 degrees, dark culture for 5-6 days.
2.农杆菌侵染及共培养2. Agrobacterium infection and co-culture
(1)将-80℃保存的BnMAX1-Cas9-1和BnMAX1-Cas9-2农杆菌菌液各取10μl, 加入到1ml含有卡那霉素、庆大霉素和利福平的LB液体培养基中,过夜培养进行活化;(1) Take 10 μl each of BnMAX1-Cas9-1 and BnMAX1-Cas9-2 Agrobacterium solution stored at -80 ° C, and add it to 1 ml of LB liquid medium containing kanamycin, gentamicin and rifampicin Medium and overnight cultures for activation;
(2)将暗培养好的苗子取出,放在灭菌的大皿中,用灼烧灭菌好的手术刀切取下胚轴,每段长0.8厘米左右,切时在大皿中倒入少量DM培养基保湿;(2) Take out the darkly cultivated seedlings, place them in a large sterilized dish, cut out the hypocotyl with a sterilized scalpel, each section is about 0.8 cm in length, and pour a small amount of DM into the large dish when cutting. Base moisturizing
(3)将活化好的菌液接到20ml含有卡那霉素、庆大霉素和利福平的LB液体培养基中,28℃200rpm培养至OD600值到0.4-0.8。用离心机2000rpm收集菌体,然后加入20ml含有100μM AS的DM培养基,重悬,28度摇床摇30分钟;(4)将DM培养基培养了30分钟后的农杆菌菌液加入到切好的下胚轴中,侵染30分钟,期间每隔五分钟左右摇动一次;(3) The activated bacterial solution was connected to 20 ml of LB liquid medium containing kanamycin, gentamicin and rifampicin, and cultured at 28 ° C and 200 rpm until the OD600 value reached 0.4-0.8. Collect the bacterial cells with a centrifuge at 2000 rpm, then add 20 ml of DM medium containing 100 μM AS, resuspend, and shake at 28 ° C for 30 minutes; (4) add the Agrobacterium bacterium solution after DM medium has been cultured for 30 minutes to the cut In a good hypocotyl, infect for 30 minutes, shaking every five minutes or so;
(5)将外植体转至放有灭菌滤纸的空培养皿中,铺开,用小滤纸将菌液吸干;(5) Transfer the explants to an empty petri dish containing sterilized filter paper, spread out, and blot the bacteria solution with small filter paper;
(6)将外植体转到M1培养基中,24℃暗培养两天。(6) The explants were transferred to M1 medium and cultured in the dark at 24 ° C for two days.
3.筛选及分化3. Screening and differentiation
将共培养两天的外植体转入含有5mg/L潮霉素的M2培养基,光照培养3周左右,此时可以看到外植体染色变深,并开始膨胀变成愈伤组织,之后将外植体转入含有8mg/L潮霉素的M3培养基,光照培养箱培养,光照长度16h/d,每两周继代一次以保证营养充分,至能看到分化出小苗。The two-day co-cultured explants were transferred to M2 medium containing 5mg / L hygromycin and cultured for about 3 weeks under light. At this time, you can see that the explants became darker and began to swell into callus. The explants were then transferred to M3 medium containing 8 mg / L hygromycin and cultured in a light incubator at a light length of 16 h / d. Subculture was carried out every two weeks to ensure adequate nutrition until seedlings could be differentiated.
4.生根4. Rooting
将长出小苗的愈伤转入已灭菌的空皿中,用镊子和手术刀将苗子从愈伤上切下,转入M4培养基光照培养箱,光照长度16h/d。Transfer the calli growing out into the sterilized empty dish, cut the seedlings from the callus with tweezers and a scalpel, and transfer them to the M4 medium light incubator with a light length of 16h / d.
5.驯化移栽5. Domestication and transplanting
将生根良好的瓶苗打开封口,拿出光照培养箱,置于温室中3-4天,之后移栽到基质中,并套上干净塑料膜保持湿度。3天后逐渐开孔防风,使植株适应外界环境。Open and seal the well-rooted bottle seedlings, take out the light incubator, place in the greenhouse for 3-4 days, and then transplant it into the substrate, and put on a clean plastic film to maintain humidity. After 3 days, the holes were gradually opened to prevent wind, so that the plants could adapt to the external environment.
本实验用到的培养基配方如表1所示。The medium formulation used in this experiment is shown in Table 1.
表1 培养基配方Table 1 Medium formula
Figure PCTCN2019108240-appb-000003
Figure PCTCN2019108240-appb-000003
Figure PCTCN2019108240-appb-000004
Figure PCTCN2019108240-appb-000004
实验例4:转基因植株突变检测Experimental Example 4: Detection of mutations in transgenic plants
1.转化植株筛选与检测1. Screening and detection of transformed plants
利用CTAB法提取得到的转基因T0代植株DNA,其中BnMAX1-Cas9-1共获得11株T0代植株,BnMAX1-Cas9-2共获得6株T0代植株,编号后PCR扩增检测转化植株,所用引物为:Hyg-120-F:5’-TGTAGGAGGGCGTGGATATG-3’,Hyg-971-R:5’-ACTTCTACACAGCCATCGGT-3’,检测T0代转化植株是否含有潮霉素筛选标记。The CT0 method was used to extract the DNA of the transgenic T0 generation plants. Among them, 11 T0 generation plants were obtained from BnMAX1-Cas9-1, and 6 T0 generation plants were obtained from BnMAX1-Cas9-2. PCR amplification was used to detect the transformed plants. Primers used It is: Hyg-120-F: 5'-TGTAGGAGGGCGTGGATATG-3 ', Hyg-971-R: 5'-ACTTCTACACAGCCATCGGT-3', and it is tested whether the TO 0-transformed plants contain a hygromycin selection marker.
2.BnMAX1-Cas9-1和BnMAX1-Cas9-2转化株系突变检测2. Mutation detection of BnMAX1-Cas9-1 and BnMAX1-Cas9-2 transformed lines
由于BnMAX1基因的两个拷贝分别在A亚基因组第三染色体和C亚基因组第三染色体上,因此设计两对引物A03-JC-F:5’-AACACCCTTCATTACAAACACTCA-3’、A03-JC-R:5’-ACTACTATCAATGGTTGCCTCCC-3’和C03-JC-F:5’-GCTTCTCCAGATATTCAGATTT-3’、C03-JC-R:5’-CAGTTTCTGTCGTCTTTTCTTA-3’(如SEQ ID NO.7、8和SEQ ID NO.9、10所示),PCR产物回收后连接T载体,送测检测BnMAX1-Cas9-1和BnMAX1-Cas9-2转化植株BnMAX1基因两拷贝的序列。测序结果显示11株BnMAX1-Cas9-1转化植株中有5株在A03位点有插入或者确实突变,4株在C03位点有插入或者确实突变,其A03、C03位点核苷酸序列图4、图6所示,测序峰图如图5、图7所示,6株BnMAX1-Cas9-2转化植株中,A03位点有4株含有插入或者缺失突变,3株在C03位点有插入或者确实突变,其核苷酸序列图8、图10所示,测序峰图如图9图11所示。Since the two copies of the BnMAX1 gene are on the third chromosome of the A subgenome and the third chromosome of the C subgenome, two pairs of primers A03-JC-F: 5'-AACACCCTTCATTACAAACACTCA-3 'and A03-JC-R: 5 were designed. '-ACTACTATCAATGGTTGCCTCCC-3' and C03-JC-F: 5'-GCTTCTCCAGATATTCAGATTT-3 ', C03-JC-R: 5'-CAGTTTCTGTCGTCTTTTCTTA-3' (such as SEQ ID ID NO.7, 8 and SEQ ID ID NO.9, (Shown in Figure 10). After the PCR product is recovered, the T vector is ligated, and the sequence of two copies of the BnMAX1 gene of the BnMAX1-Cas9-1 and BnMAX1-Cas9-2 transformed plants is tested. Sequencing results showed that 5 of the 11 BnMAX1-Cas9-1 transformed plants had insertions or mutations at the A03 site, and 4 had insertions or mutations at the C03 site. The nucleotide sequences of the A03 and C03 sites are shown in Figure 4. As shown in Figure 6, the sequencing peaks are shown in Figures 5 and 7. Of the 6 BnMAX1-Cas9-2 transformed plants, 4 at the A03 site contained insertion or deletion mutations, and 3 had insertions or deletions at the C03 site. Indeed, the nucleotide sequences are shown in Figures 8 and 10, and the sequencing peaks are shown in Figures 9 and 11.
实验例5:转基因T2代群体表型观察、性状统计与无潮霉素标记筛选Experimental Example 5: Phenotype observation, trait statistics and non-hygromycin marker screening of transgenic T2 population
BnMAX1-Cas9-1和BnMAX1-Cas9-2的T0代收种后,继续播种种植T1代。在BnMAX1-Cas9-1各T1代株系中,发现BnMAX1-Cas9-1-8和BnMAX1-Cas9-1-11两个株系分离出有表型植株。在BnMAX1-Cas9-2各T1代株系中,发现BnMAX1-Cas9-2-2、BnMAX1-Cas9-2-3和BnMAX1-Cas9-2-5三个株系分离出有表型植株:直观表型为转化株系底部分枝数增多。使用A03-JC-F/R和C03-JC-F/R引物进行PCR检测,结果显示,有表型突变均为纯合突变,即BnMAX1基因在A和C基因组上的两个拷贝均被敲除。After the T0 generation of BnMAX1-Cas9-1 and BnMAX1-Cas9-2 were collected, the T1 generation was continued to be planted. Phenotypic plants were isolated from the two T1 generation lines of BnMAX1-Cas9-1, BnMAX1-Cas9-1-8 and BnMAX1-Cas9-1-11. Among the T1 generation lines of BnMAX1-Cas9-2, three lines of BnMAX1-Cas9-2-2, BnMAX1-Cas9-2-3, and BnMAX1-Cas9-2-5 were found to have phenotypic plants: visual table The type is that the number of branches in the bottom part of the transformed line increases. PCR tests using A03-JC-F / R and C03-JC-F / R primers revealed that all phenotypic mutations were homozygous, that is, two copies of the BnMAX1 gene on the A and C genomes were knocked out except.
同时,利用潮霉素鉴定引物Hyg-120-F:5’-TGTAGGAGGGCGTGGATATG-3’Hyg-971-R:5’-ACTTCTACACAGCCATCGGT-3’对BnMAX1-Cas9-1-8的T1代各单株和BnMAX1-Cas9-2-2的T1代各单株进行潮霉素分离鉴定,用于筛选BnMAX1基因在A和C基因组上的两个拷贝均被敲除同时也没有潮霉素抗性的单株,这种单株由于没有筛选抗性标记,可直接用于生产。BnMAX1-Cas9-1-8的T1代筛选出一株纯合突变同时无潮霉素抗性单株,BnMAX1-Cas9-2-2的T1代筛选出三株纯合突变同时无潮霉素抗性单株。BnMAX1-Cas9-1-8株系和BnMAX1-Cas9-2-2株系的突变方式如图12所示。At the same time, hygromycin was used to identify primers Hyg-120-F: 5'-TGTAGGAGGGCGTGGATATG-3'Hyg-971-R: 5'-ACTTCTACACAGCCATCGGT-3 'to Tn generation of BnMAX1-Cas9-1-8 and BnMAX1 -Isolation and identification of hygromycin in T1 generation of Cas9-2-2, used to screen for the two copies of the BnMAX1 gene on the A and C genomes that were knocked out and did not have hygromycin resistance. This single plant can be directly used for production because it has no screening resistance marker. One homozygous mutation and no hygromycin resistance were selected from the T1 generation of BnMAX1-Cas9-1-8, and three homozygous mutations and no hygromycin resistance were selected from the T1 generation of BnMAX1-Cas9-2-2. Sexual single plant. The mutation patterns of the BnMAX1-Cas9-1-8 line and the BnMAX1-Cas9-2-2 line are shown in FIG. 12.
BnMAX1-Cas9-1-8纯合突变单株收种后继续种植T2代进行性状调查和统计:种植20株BnMAX1-Cas9-1-8纯合突变株系单株,同时种植其转化亲本862作为对照,表型如图13所示。在油菜顶端花序完全开完后统计性状如:分枝数、株高,在收获时统计性状如:单株角果数,角果长和角粒数,在种子烘干后统计性状如:单株产量和千粒重。计算平均值,统计结果如表2所示。After the BnMAX1-Cas9-1-8 homozygous mutant single plant was collected, the T2 generation was continued for character investigation and statistics: 20 BnMAX1-Cas9-1-8 homozygous mutant single plants were planted, and the transformed parent 862 was planted at the same time. In contrast, the phenotype is shown in Figure 13. After the inflorescence at the top of rapeseed is completely opened, the statistical characteristics are as follows: the number of branches and the height of the plant. At the time of harvest, the statistical characteristics are as follows: the number of horns per plant, the length of the horns and the number of horns. After the seeds are dried, the statistics are as follows: Plant yield and thousand kernel weight. Calculate the average value, and the statistical results are shown in Table 2.
表2 表性统计结果Table 2 Table statistical results
Figure PCTCN2019108240-appb-000005
Figure PCTCN2019108240-appb-000005
根据以上拷种数据,可以看出,相对于其亲本,突变转化株BnMAX1-Cas9-1-8的株高显著降低,分枝数显著增多,同时单株角果数和单株产量也显著提高。拷种结果证明了本发明通过利用CRISPR/Cas9系统定点敲除甘蓝型油菜BnMAX1 基因获得功能突变株,可以降低油菜的株高,同时提高产量,为油菜高产、抗倒伏育提供了优秀的种质资源和高效的育种方法与理论技术支持。According to the above data, it can be seen that the mutant transformant BnMAX1-Cas9-1-8 has a significantly reduced plant height and a significantly increased number of branches compared to its parent. At the same time, the number of carobs and yield per plant have also increased significantly. . The results of seed copying prove that the present invention obtains a functional mutant strain by using the CRISPR / Cas9 system to knock out the BnMAX1 gene of Brassica napus, which can reduce the height of rapeseed and increase the yield at the same time, and provides excellent germplasm for high yield and lodging resistance of rapeseed. Resources and efficient breeding methods and theoretical technical support.

Claims (6)

  1. 两条特异性靶向甘蓝型油菜BnMAX1基因的sgRNA,其特征在于,sgRNA-1的核苷酸序列如SEQ ID NO.1所示,sgRNA-2的核苷酸序列如SEQ ID NO.2所示。Two sgRNAs specifically targeting the Brassica napus BnMAX1 gene are characterized in that the nucleotide sequence of sgRNA-1 is shown in SEQ ID NO.1, and the nucleotide sequence of sgRNA-2 is shown in SEQ ID ID NO.2 Show.
  2. 利用CRISPR-Cas9系统特异性敲除甘蓝型油菜BnMAX1基因的方法,包括如下步骤:A method for specifically knocking out the BnMAX1 gene of Brassica napus using the CRISPR-Cas9 system includes the following steps:
    (1)以权利要求1所述的sgRNA为靶序列,分别设计合成正向和反向寡核苷酸序列,退火形成双链,分别制成Oligo二聚体;(1) using the sgRNA according to claim 1 as a target sequence, designing and synthesizing forward and reverse oligonucleotide sequences, respectively, annealing to form double strands, and respectively making Oligo dimers;
    (2)将Oligo二聚体分别与Cas9载体连接,获得两种植物表达载体;(2) ligating the Oligo dimer with the Cas9 vector to obtain two plant expression vectors;
    (3)通过农杆菌介导的方式将任意一种植物表达载体转化甘蓝型油菜;(3) transforming any kind of plant expression vector into Brassica napus by means of Agrobacterium tumefaciens;
    (4)在转基因后代中筛选A染色体和C染色体均发生BnMAX1基因突变的植株。(4) Screening plants with BnMAX1 gene mutations in both A and C chromosomes in transgenic offspring.
  3. 根据权利要求2所述的利用CRISPR-Cas9系统特异性敲除甘蓝型油菜BnMAX1基因的方法,其特征在于,根据sgRNA-1设计的寡核苷酸序列如SEQ ID NO.3-4所示,根据sgRNA-2设计的寡核苷酸序列如SEQ ID NO.5-6所示。The method for specifically knocking out the Brassica napus BnMAX1 gene by using the CRISPR-Cas9 system according to claim 2, characterized in that the oligonucleotide sequence designed according to sgRNA-1 is shown in SEQ ID NO.3-4, The oligonucleotide sequence designed according to sgRNA-2 is shown in SEQ ID No. 5-6.
  4. 根据权利要求2所述的利用CRISPR-Cas9系统特异性敲除甘蓝型油菜BnMAX1基因的方法,其特征在于,步骤(4)中用于检测A染色体中BnMAX1基因突变的引物序列如SEQ ID NO.7-8所示,检测C染色体中BnMAX1基因突变的引物序列如SEQ ID NO.9-10所示。The method according to claim 2 for specifically knocking out the BnMAX1 gene of Brassica napus by using the CRISPR-Cas9 system, characterized in that, in step (4), a primer sequence for detecting a mutation of the BnMAX1 gene in the A chromosome is SEQ ID NO. As shown in 7-8, the sequence of the primer for detecting the mutation of the BnMAX1 gene in the C chromosome is shown in SEQ ID No. 9-10.
  5. 根据权利要求2所述的利用CRISPR-Cas9系统特异性编辑甘蓝型油菜A染色体和C染色体BnMAX1基因获得的核酸序列突变类型,其特征如附图4、6、8和10所示。The type of mutation of a nucleic acid sequence obtained by specifically editing the A chromosome A and C chromosome BnMAX1 genes of Brassica napus by using the CRISPR-Cas9 system according to claim 2, the characteristics of which are shown in Figures 4, 6, 8 and 10.
  6. 权利要求1所述的sgRNA或权利要求2所述的方法在改良油菜性状中的应用,包括增加油菜分枝数、增加单株角果数、降低油菜高度、增加产量。The application of the sgRNA according to claim 1 or the method according to claim 2 to improving rape traits includes increasing the number of rape branches, increasing the number of carob fruits per plant, reducing rape height, and increasing yield.
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