WO2005054503A2 - Biomarkers for graft rejection - Google Patents

Biomarkers for graft rejection Download PDF

Info

Publication number
WO2005054503A2
WO2005054503A2 PCT/EP2004/013727 EP2004013727W WO2005054503A2 WO 2005054503 A2 WO2005054503 A2 WO 2005054503A2 EP 2004013727 W EP2004013727 W EP 2004013727W WO 2005054503 A2 WO2005054503 A2 WO 2005054503A2
Authority
WO
WIPO (PCT)
Prior art keywords
gene
expression
rejection
level
subject
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Ceased
Application number
PCT/EP2004/013727
Other languages
English (en)
French (fr)
Other versions
WO2005054503A3 (en
Inventor
Marc Bigaud
Jeanne Kehren
Friedrich Raulf
Grazyna Wieczorek
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Novartis Pharma GmbH Austria
Novartis AG
Original Assignee
Novartis Pharma GmbH Austria
Novartis AG
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Novartis Pharma GmbH Austria, Novartis AG filed Critical Novartis Pharma GmbH Austria
Priority to EP04801199A priority Critical patent/EP1694860A2/en
Priority to US10/581,068 priority patent/US20070111210A1/en
Priority to JP2006541900A priority patent/JP4316617B2/ja
Publication of WO2005054503A2 publication Critical patent/WO2005054503A2/en
Publication of WO2005054503A3 publication Critical patent/WO2005054503A3/en
Anticipated expiration legal-status Critical
Priority to US12/501,706 priority patent/US20090269334A1/en
Priority to US13/280,839 priority patent/US20120039868A1/en
Ceased legal-status Critical Current

Links

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6883Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P37/00Drugs for immunological or allergic disorders
    • A61P37/02Immunomodulators
    • A61P37/06Immunosuppressants, e.g. drugs for graft rejection
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/118Prognosis of disease development
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/136Screening for pharmacological compounds
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/158Expression markers
    • YGENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10TECHNICAL SUBJECTS COVERED BY FORMER USPC
    • Y10TTECHNICAL SUBJECTS COVERED BY FORMER US CLASSIFICATION
    • Y10T436/00Chemistry: analytical and immunological testing
    • Y10T436/14Heterocyclic carbon compound [i.e., O, S, N, Se, Te, as only ring hetero atom]
    • Y10T436/142222Hetero-O [e.g., ascorbic acid, etc.]
    • Y10T436/143333Saccharide [e.g., DNA, etc.]

Definitions

  • genes identified in tables 1 to 3 are particularly useful as biomarkers as they are potentially detectable in a body fluid (e.g. serum, plasma or urine). Thus biopsy samples from a transplanted tissue are not necessarily required.
  • a body fluid e.g. serum, plasma or urine.
  • the invention also provides the use of an expression product of (e.g. a protein encoded by) a gene as listed in Table 1 , 2 or 3 as a biomarker for (e.g. chronic) transplant rejection.
  • an expression product of e.g. a protein encoded by
  • a gene as listed in Table 1 , 2 or 3 as a biomarker for (e.g. chronic) transplant rejection.
  • microarray is incubated at 45°C for 15 minutes.
  • the array chamber is filled with freshly prepared pre-treatment solution, prewarmed to 45°C.
  • Pre-treatment solution 300 ⁇ l per microarray 294 ⁇ l 1X MES hybridization buffer

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  • Chemical & Material Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Engineering & Computer Science (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Immunology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Analytical Chemistry (AREA)
  • Genetics & Genomics (AREA)
  • General Health & Medical Sciences (AREA)
  • Microbiology (AREA)
  • General Engineering & Computer Science (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Molecular Biology (AREA)
  • Pathology (AREA)
  • Physics & Mathematics (AREA)
  • Biochemistry (AREA)
  • Medicinal Chemistry (AREA)
  • Veterinary Medicine (AREA)
  • Public Health (AREA)
  • Animal Behavior & Ethology (AREA)
  • Pharmacology & Pharmacy (AREA)
  • Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
  • General Chemical & Material Sciences (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Transplantation (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
  • Medicines Containing Antibodies Or Antigens For Use As Internal Diagnostic Agents (AREA)
  • Medicines That Contain Protein Lipid Enzymes And Other Medicines (AREA)
PCT/EP2004/013727 2003-12-03 2004-12-02 Biomarkers for graft rejection Ceased WO2005054503A2 (en)

Priority Applications (5)

Application Number Priority Date Filing Date Title
EP04801199A EP1694860A2 (en) 2003-12-03 2004-12-02 Biomarkers for graft rejection
US10/581,068 US20070111210A1 (en) 2003-12-03 2004-12-02 Biomarkers for graft rejection
JP2006541900A JP4316617B2 (ja) 2003-12-03 2004-12-02 移植片拒絶反応のバイオマーカー
US12/501,706 US20090269334A1 (en) 2003-12-03 2009-07-13 Biomarkers for graft rejection
US13/280,839 US20120039868A1 (en) 2003-12-03 2011-10-25 Biomarkers for Graft Rejection

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US52672203P 2003-12-03 2003-12-03
US60/526,722 2003-12-03

Related Child Applications (2)

Application Number Title Priority Date Filing Date
US10/581,068 A-371-Of-International US20070111210A1 (en) 2003-12-03 2004-12-02 Biomarkers for graft rejection
US12/501,706 Continuation US20090269334A1 (en) 2003-12-03 2009-07-13 Biomarkers for graft rejection

Publications (2)

Publication Number Publication Date
WO2005054503A2 true WO2005054503A2 (en) 2005-06-16
WO2005054503A3 WO2005054503A3 (en) 2005-07-21

Family

ID=34652465

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/EP2004/013727 Ceased WO2005054503A2 (en) 2003-12-03 2004-12-02 Biomarkers for graft rejection

Country Status (4)

Country Link
US (3) US20070111210A1 (https=)
EP (1) EP1694860A2 (https=)
JP (2) JP4316617B2 (https=)
WO (1) WO2005054503A2 (https=)

Cited By (13)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2007112999A3 (en) * 2006-04-03 2007-12-21 Novaratis Ag Predictive biomarkers for chronic allograft nephropathy
WO2007104537A3 (en) * 2006-03-15 2008-01-10 Novartis Ag Methods and compositions for assessing acute rejection
WO2008009132A1 (en) * 2006-07-21 2008-01-24 The Governors Of The University Of Alberta Tissue rejection
JP2008151517A (ja) * 2006-12-14 2008-07-03 Niigata Univ 腎障害の判定方法
WO2008027428A3 (en) * 2006-08-28 2008-09-25 Source Prec Medicine Gene expression profiling for identification, monitoring and treatment of transplant rejection
EP2031073A1 (en) * 2007-08-31 2009-03-04 TC LAND Expression Diagnostic of immune graft tolerance using TMTC3 gene expression levels
WO2009127644A1 (en) * 2008-04-15 2009-10-22 Rainer Oberbauer Markers of acute kidney failure
JP2009538599A (ja) * 2006-04-27 2009-11-12 ユニベルシテ ドゥ モントリオール 移植片対宿主病のリスクの評価および低減
JP2010524427A (ja) * 2006-04-21 2010-07-22 ノバルティス アーゲー 慢性移植片機能障害のためのバイオマーカー
EP2671574A1 (en) * 2012-06-04 2013-12-11 VitaK B.V. Use of vitamin K to decrease allograft failure and patient mortality after organ transplantation
US20150293131A1 (en) * 2012-04-02 2015-10-15 Astute Medical, Inc. Methods and compositions for diagnosis and prognosis of sepsis
WO2016097259A1 (en) * 2014-12-19 2016-06-23 INSERM (Institut National de la Santé et de la Recherche Médicale) Methods for predicting graft alterations
CN110960672A (zh) * 2019-12-18 2020-04-07 西南民族大学 一种提高牦牛免疫能力的aif-1蛋白注射液

Families Citing this family (14)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2005070086A2 (en) 2004-01-21 2005-08-04 The Board Of Trustees Of The Leland Stanford Junior University Methods and compositions for determining a graft tolerant phenotype in a subject
USRE46843E1 (en) 2005-03-14 2018-05-15 The Board Of Trustees Of The Leland Stanford Junior University Methods and compositions for evaluating graft survival in a solid organ transplant recipient
EP2604703B1 (en) 2005-03-14 2017-02-01 The Board of Trustees of the Leland Stanford Junior University Methods for evaluating graft survival in a solid organ transplant recipient
WO2010021696A1 (en) * 2008-08-18 2010-02-25 The Board Of Trustees Of The Leland Stanford Junior University Methods and compositions for determining a graft tolerant phenotype in a subject
ES2492498T3 (es) 2009-01-15 2014-09-09 The Board Of Trustees Of The Leland Stanford Junior University Panel de biomarcadores para el diagnóstico y la predicción de rechazo de injerto
US20120165207A1 (en) * 2009-02-12 2012-06-28 The Board Of Trustees Of The Leland Stanford Junior University Methods for Monitoring Allograft Rejection
EP2507630B1 (en) 2009-12-02 2017-01-25 The Board of Trustees of The Leland Stanford Junior University Biomarkers for determining an allograft tolerant phenotype
WO2011119980A1 (en) 2010-03-25 2011-09-29 The Board Of Trustees Of The Leland Stanford Junior University Protein and gene biomarkers for rejection of organ transplants
WO2012052994A2 (en) * 2010-10-17 2012-04-26 Yeda Research And Development Co. Ltd. Markers of primary graft dysfunction
US8962261B2 (en) 2011-04-06 2015-02-24 The Board Of Trustees Of The Leland Stanford Junior University Autoantibody biomarkers for IGA nephropathy
WO2012156513A1 (en) * 2011-05-18 2012-11-22 INSERM (Institut National de la Santé et de la Recherche Médicale) Method for determining whether a subject is at risk of having or developing a chronic kidney disease
PL2875049T3 (pl) * 2012-07-18 2019-07-31 Institut National De La Santé Et De La Recherche Médicale (Inserm) Sposoby zapobiegania i leczenia przewlekłej choroby nerek (ckd)
US20200174014A1 (en) 2016-12-19 2020-06-04 Osaka University METHOD FOR IN VITRO EARLY DIAGNOSIS OF ANTIBODY MEDIATED REJECTION AFTER ORGAN TRANSPLANTATION USING IgM-TYPE MEMORY B CELL DIFFERENTIATION CULTURE SYSTEM
WO2025199256A1 (en) * 2024-03-20 2025-09-25 Alkahest, Inc. Longitudinal sample sets and methods of making and using the same

Family Cites Families (8)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5527884A (en) * 1993-12-21 1996-06-18 President And Fellows Of Harvard College Mediators of chronic allograft rejection and DNA molecules encoding them
US7625697B2 (en) * 1994-06-17 2009-12-01 The Board Of Trustees Of The Leland Stanford Junior University Methods for constructing subarrays and subarrays made thereby
US20030104371A1 (en) * 1997-09-24 2003-06-05 Strom Terry B. Methods of evaluating transplant rejection
US6187534B1 (en) * 1997-09-24 2001-02-13 Cornell Research Foundation, Inc. Methods of evaluating transplant rejection
US20030113744A1 (en) * 2001-05-11 2003-06-19 O' Toole Margot M. Methods for diagnosing and treating ischemia and reperfusion injury and compositions thereof
US7235358B2 (en) * 2001-06-08 2007-06-26 Expression Diagnostics, Inc. Methods and compositions for diagnosing and monitoring transplant rejection
GB0200929D0 (en) * 2002-01-16 2002-03-06 Univ Glasgow Tissue rejection
US20060099591A1 (en) * 2002-08-22 2006-05-11 Andreas Krause Diagnosis of chronic rejection

Cited By (19)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2009529340A (ja) * 2006-03-15 2009-08-20 ノバルティス アクチエンゲゼルシャフト 急性拒絶反応を評価する方法および組成物
WO2007104537A3 (en) * 2006-03-15 2008-01-10 Novartis Ag Methods and compositions for assessing acute rejection
US7811767B2 (en) 2006-03-15 2010-10-12 Novartis Ag Methods and compositions for assessing acute rejection
JP2009532047A (ja) * 2006-04-03 2009-09-10 ノバルティス アクチエンゲゼルシャフト 慢性同種移植腎症についての予測バイオマーカー
WO2007112999A3 (en) * 2006-04-03 2007-12-21 Novaratis Ag Predictive biomarkers for chronic allograft nephropathy
JP2010524427A (ja) * 2006-04-21 2010-07-22 ノバルティス アーゲー 慢性移植片機能障害のためのバイオマーカー
JP2009538599A (ja) * 2006-04-27 2009-11-12 ユニベルシテ ドゥ モントリオール 移植片対宿主病のリスクの評価および低減
WO2008009132A1 (en) * 2006-07-21 2008-01-24 The Governors Of The University Of Alberta Tissue rejection
WO2008027428A3 (en) * 2006-08-28 2008-09-25 Source Prec Medicine Gene expression profiling for identification, monitoring and treatment of transplant rejection
JP2008151517A (ja) * 2006-12-14 2008-07-03 Niigata Univ 腎障害の判定方法
WO2009027524A1 (en) * 2007-08-31 2009-03-05 Tc Land Expression Diagnostic of immune graft tolerance using tmtc3 gene expression levels
EP2031073A1 (en) * 2007-08-31 2009-03-04 TC LAND Expression Diagnostic of immune graft tolerance using TMTC3 gene expression levels
WO2009127644A1 (en) * 2008-04-15 2009-10-22 Rainer Oberbauer Markers of acute kidney failure
US20150293131A1 (en) * 2012-04-02 2015-10-15 Astute Medical, Inc. Methods and compositions for diagnosis and prognosis of sepsis
EP2671574A1 (en) * 2012-06-04 2013-12-11 VitaK B.V. Use of vitamin K to decrease allograft failure and patient mortality after organ transplantation
WO2013182579A1 (en) 2012-06-04 2013-12-12 Vitak B.V. New biomarkers to estimate the risk of allograft failure and patient mortality after organ transplantation
WO2016097259A1 (en) * 2014-12-19 2016-06-23 INSERM (Institut National de la Santé et de la Recherche Médicale) Methods for predicting graft alterations
US10961580B2 (en) 2014-12-19 2021-03-30 INSERM (Institut National de la Santé et de la Recherche Médicale) Methods for predicting graft alterations
CN110960672A (zh) * 2019-12-18 2020-04-07 西南民族大学 一种提高牦牛免疫能力的aif-1蛋白注射液

Also Published As

Publication number Publication date
JP4316617B2 (ja) 2009-08-19
WO2005054503A3 (en) 2005-07-21
JP2009195234A (ja) 2009-09-03
JP2007520209A (ja) 2007-07-26
US20090269334A1 (en) 2009-10-29
US20120039868A1 (en) 2012-02-16
EP1694860A2 (en) 2006-08-30
US20070111210A1 (en) 2007-05-17

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