WO2005054503A2 - Biomarkers for graft rejection - Google Patents
Biomarkers for graft rejection Download PDFInfo
- Publication number
- WO2005054503A2 WO2005054503A2 PCT/EP2004/013727 EP2004013727W WO2005054503A2 WO 2005054503 A2 WO2005054503 A2 WO 2005054503A2 EP 2004013727 W EP2004013727 W EP 2004013727W WO 2005054503 A2 WO2005054503 A2 WO 2005054503A2
- Authority
- WO
- WIPO (PCT)
- Prior art keywords
- gene
- expression
- rejection
- level
- subject
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Ceased
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6883—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P37/00—Drugs for immunological or allergic disorders
- A61P37/02—Immunomodulators
- A61P37/06—Immunosuppressants, e.g. drugs for graft rejection
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/118—Prognosis of disease development
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/136—Screening for pharmacological compounds
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/158—Expression markers
-
- Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y10—TECHNICAL SUBJECTS COVERED BY FORMER USPC
- Y10T—TECHNICAL SUBJECTS COVERED BY FORMER US CLASSIFICATION
- Y10T436/00—Chemistry: analytical and immunological testing
- Y10T436/14—Heterocyclic carbon compound [i.e., O, S, N, Se, Te, as only ring hetero atom]
- Y10T436/142222—Hetero-O [e.g., ascorbic acid, etc.]
- Y10T436/143333—Saccharide [e.g., DNA, etc.]
Definitions
- genes identified in tables 1 to 3 are particularly useful as biomarkers as they are potentially detectable in a body fluid (e.g. serum, plasma or urine). Thus biopsy samples from a transplanted tissue are not necessarily required.
- a body fluid e.g. serum, plasma or urine.
- the invention also provides the use of an expression product of (e.g. a protein encoded by) a gene as listed in Table 1 , 2 or 3 as a biomarker for (e.g. chronic) transplant rejection.
- an expression product of e.g. a protein encoded by
- a gene as listed in Table 1 , 2 or 3 as a biomarker for (e.g. chronic) transplant rejection.
- microarray is incubated at 45°C for 15 minutes.
- the array chamber is filled with freshly prepared pre-treatment solution, prewarmed to 45°C.
- Pre-treatment solution 300 ⁇ l per microarray 294 ⁇ l 1X MES hybridization buffer
Landscapes
- Chemical & Material Sciences (AREA)
- Health & Medical Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Organic Chemistry (AREA)
- Engineering & Computer Science (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Immunology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Analytical Chemistry (AREA)
- Genetics & Genomics (AREA)
- General Health & Medical Sciences (AREA)
- Microbiology (AREA)
- General Engineering & Computer Science (AREA)
- Biotechnology (AREA)
- Biophysics (AREA)
- Molecular Biology (AREA)
- Pathology (AREA)
- Physics & Mathematics (AREA)
- Biochemistry (AREA)
- Medicinal Chemistry (AREA)
- Veterinary Medicine (AREA)
- Public Health (AREA)
- Animal Behavior & Ethology (AREA)
- Pharmacology & Pharmacy (AREA)
- Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
- General Chemical & Material Sciences (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Transplantation (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Investigating Or Analysing Biological Materials (AREA)
- Medicines Containing Antibodies Or Antigens For Use As Internal Diagnostic Agents (AREA)
- Medicines That Contain Protein Lipid Enzymes And Other Medicines (AREA)
Priority Applications (5)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| EP04801199A EP1694860A2 (en) | 2003-12-03 | 2004-12-02 | Biomarkers for graft rejection |
| US10/581,068 US20070111210A1 (en) | 2003-12-03 | 2004-12-02 | Biomarkers for graft rejection |
| JP2006541900A JP4316617B2 (ja) | 2003-12-03 | 2004-12-02 | 移植片拒絶反応のバイオマーカー |
| US12/501,706 US20090269334A1 (en) | 2003-12-03 | 2009-07-13 | Biomarkers for graft rejection |
| US13/280,839 US20120039868A1 (en) | 2003-12-03 | 2011-10-25 | Biomarkers for Graft Rejection |
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US52672203P | 2003-12-03 | 2003-12-03 | |
| US60/526,722 | 2003-12-03 |
Related Child Applications (2)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| US10/581,068 A-371-Of-International US20070111210A1 (en) | 2003-12-03 | 2004-12-02 | Biomarkers for graft rejection |
| US12/501,706 Continuation US20090269334A1 (en) | 2003-12-03 | 2009-07-13 | Biomarkers for graft rejection |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| WO2005054503A2 true WO2005054503A2 (en) | 2005-06-16 |
| WO2005054503A3 WO2005054503A3 (en) | 2005-07-21 |
Family
ID=34652465
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| PCT/EP2004/013727 Ceased WO2005054503A2 (en) | 2003-12-03 | 2004-12-02 | Biomarkers for graft rejection |
Country Status (4)
| Country | Link |
|---|---|
| US (3) | US20070111210A1 (https=) |
| EP (1) | EP1694860A2 (https=) |
| JP (2) | JP4316617B2 (https=) |
| WO (1) | WO2005054503A2 (https=) |
Cited By (13)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2007112999A3 (en) * | 2006-04-03 | 2007-12-21 | Novaratis Ag | Predictive biomarkers for chronic allograft nephropathy |
| WO2007104537A3 (en) * | 2006-03-15 | 2008-01-10 | Novartis Ag | Methods and compositions for assessing acute rejection |
| WO2008009132A1 (en) * | 2006-07-21 | 2008-01-24 | The Governors Of The University Of Alberta | Tissue rejection |
| JP2008151517A (ja) * | 2006-12-14 | 2008-07-03 | Niigata Univ | 腎障害の判定方法 |
| WO2008027428A3 (en) * | 2006-08-28 | 2008-09-25 | Source Prec Medicine | Gene expression profiling for identification, monitoring and treatment of transplant rejection |
| EP2031073A1 (en) * | 2007-08-31 | 2009-03-04 | TC LAND Expression | Diagnostic of immune graft tolerance using TMTC3 gene expression levels |
| WO2009127644A1 (en) * | 2008-04-15 | 2009-10-22 | Rainer Oberbauer | Markers of acute kidney failure |
| JP2009538599A (ja) * | 2006-04-27 | 2009-11-12 | ユニベルシテ ドゥ モントリオール | 移植片対宿主病のリスクの評価および低減 |
| JP2010524427A (ja) * | 2006-04-21 | 2010-07-22 | ノバルティス アーゲー | 慢性移植片機能障害のためのバイオマーカー |
| EP2671574A1 (en) * | 2012-06-04 | 2013-12-11 | VitaK B.V. | Use of vitamin K to decrease allograft failure and patient mortality after organ transplantation |
| US20150293131A1 (en) * | 2012-04-02 | 2015-10-15 | Astute Medical, Inc. | Methods and compositions for diagnosis and prognosis of sepsis |
| WO2016097259A1 (en) * | 2014-12-19 | 2016-06-23 | INSERM (Institut National de la Santé et de la Recherche Médicale) | Methods for predicting graft alterations |
| CN110960672A (zh) * | 2019-12-18 | 2020-04-07 | 西南民族大学 | 一种提高牦牛免疫能力的aif-1蛋白注射液 |
Families Citing this family (14)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2005070086A2 (en) | 2004-01-21 | 2005-08-04 | The Board Of Trustees Of The Leland Stanford Junior University | Methods and compositions for determining a graft tolerant phenotype in a subject |
| USRE46843E1 (en) | 2005-03-14 | 2018-05-15 | The Board Of Trustees Of The Leland Stanford Junior University | Methods and compositions for evaluating graft survival in a solid organ transplant recipient |
| EP2604703B1 (en) | 2005-03-14 | 2017-02-01 | The Board of Trustees of the Leland Stanford Junior University | Methods for evaluating graft survival in a solid organ transplant recipient |
| WO2010021696A1 (en) * | 2008-08-18 | 2010-02-25 | The Board Of Trustees Of The Leland Stanford Junior University | Methods and compositions for determining a graft tolerant phenotype in a subject |
| ES2492498T3 (es) | 2009-01-15 | 2014-09-09 | The Board Of Trustees Of The Leland Stanford Junior University | Panel de biomarcadores para el diagnóstico y la predicción de rechazo de injerto |
| US20120165207A1 (en) * | 2009-02-12 | 2012-06-28 | The Board Of Trustees Of The Leland Stanford Junior University | Methods for Monitoring Allograft Rejection |
| EP2507630B1 (en) | 2009-12-02 | 2017-01-25 | The Board of Trustees of The Leland Stanford Junior University | Biomarkers for determining an allograft tolerant phenotype |
| WO2011119980A1 (en) | 2010-03-25 | 2011-09-29 | The Board Of Trustees Of The Leland Stanford Junior University | Protein and gene biomarkers for rejection of organ transplants |
| WO2012052994A2 (en) * | 2010-10-17 | 2012-04-26 | Yeda Research And Development Co. Ltd. | Markers of primary graft dysfunction |
| US8962261B2 (en) | 2011-04-06 | 2015-02-24 | The Board Of Trustees Of The Leland Stanford Junior University | Autoantibody biomarkers for IGA nephropathy |
| WO2012156513A1 (en) * | 2011-05-18 | 2012-11-22 | INSERM (Institut National de la Santé et de la Recherche Médicale) | Method for determining whether a subject is at risk of having or developing a chronic kidney disease |
| PL2875049T3 (pl) * | 2012-07-18 | 2019-07-31 | Institut National De La Santé Et De La Recherche Médicale (Inserm) | Sposoby zapobiegania i leczenia przewlekłej choroby nerek (ckd) |
| US20200174014A1 (en) | 2016-12-19 | 2020-06-04 | Osaka University | METHOD FOR IN VITRO EARLY DIAGNOSIS OF ANTIBODY MEDIATED REJECTION AFTER ORGAN TRANSPLANTATION USING IgM-TYPE MEMORY B CELL DIFFERENTIATION CULTURE SYSTEM |
| WO2025199256A1 (en) * | 2024-03-20 | 2025-09-25 | Alkahest, Inc. | Longitudinal sample sets and methods of making and using the same |
Family Cites Families (8)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US5527884A (en) * | 1993-12-21 | 1996-06-18 | President And Fellows Of Harvard College | Mediators of chronic allograft rejection and DNA molecules encoding them |
| US7625697B2 (en) * | 1994-06-17 | 2009-12-01 | The Board Of Trustees Of The Leland Stanford Junior University | Methods for constructing subarrays and subarrays made thereby |
| US20030104371A1 (en) * | 1997-09-24 | 2003-06-05 | Strom Terry B. | Methods of evaluating transplant rejection |
| US6187534B1 (en) * | 1997-09-24 | 2001-02-13 | Cornell Research Foundation, Inc. | Methods of evaluating transplant rejection |
| US20030113744A1 (en) * | 2001-05-11 | 2003-06-19 | O' Toole Margot M. | Methods for diagnosing and treating ischemia and reperfusion injury and compositions thereof |
| US7235358B2 (en) * | 2001-06-08 | 2007-06-26 | Expression Diagnostics, Inc. | Methods and compositions for diagnosing and monitoring transplant rejection |
| GB0200929D0 (en) * | 2002-01-16 | 2002-03-06 | Univ Glasgow | Tissue rejection |
| US20060099591A1 (en) * | 2002-08-22 | 2006-05-11 | Andreas Krause | Diagnosis of chronic rejection |
-
2004
- 2004-12-02 WO PCT/EP2004/013727 patent/WO2005054503A2/en not_active Ceased
- 2004-12-02 JP JP2006541900A patent/JP4316617B2/ja not_active Expired - Fee Related
- 2004-12-02 EP EP04801199A patent/EP1694860A2/en not_active Withdrawn
- 2004-12-02 US US10/581,068 patent/US20070111210A1/en not_active Abandoned
-
2009
- 2009-04-13 JP JP2009097258A patent/JP2009195234A/ja active Pending
- 2009-07-13 US US12/501,706 patent/US20090269334A1/en not_active Abandoned
-
2011
- 2011-10-25 US US13/280,839 patent/US20120039868A1/en not_active Abandoned
Cited By (19)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| JP2009529340A (ja) * | 2006-03-15 | 2009-08-20 | ノバルティス アクチエンゲゼルシャフト | 急性拒絶反応を評価する方法および組成物 |
| WO2007104537A3 (en) * | 2006-03-15 | 2008-01-10 | Novartis Ag | Methods and compositions for assessing acute rejection |
| US7811767B2 (en) | 2006-03-15 | 2010-10-12 | Novartis Ag | Methods and compositions for assessing acute rejection |
| JP2009532047A (ja) * | 2006-04-03 | 2009-09-10 | ノバルティス アクチエンゲゼルシャフト | 慢性同種移植腎症についての予測バイオマーカー |
| WO2007112999A3 (en) * | 2006-04-03 | 2007-12-21 | Novaratis Ag | Predictive biomarkers for chronic allograft nephropathy |
| JP2010524427A (ja) * | 2006-04-21 | 2010-07-22 | ノバルティス アーゲー | 慢性移植片機能障害のためのバイオマーカー |
| JP2009538599A (ja) * | 2006-04-27 | 2009-11-12 | ユニベルシテ ドゥ モントリオール | 移植片対宿主病のリスクの評価および低減 |
| WO2008009132A1 (en) * | 2006-07-21 | 2008-01-24 | The Governors Of The University Of Alberta | Tissue rejection |
| WO2008027428A3 (en) * | 2006-08-28 | 2008-09-25 | Source Prec Medicine | Gene expression profiling for identification, monitoring and treatment of transplant rejection |
| JP2008151517A (ja) * | 2006-12-14 | 2008-07-03 | Niigata Univ | 腎障害の判定方法 |
| WO2009027524A1 (en) * | 2007-08-31 | 2009-03-05 | Tc Land Expression | Diagnostic of immune graft tolerance using tmtc3 gene expression levels |
| EP2031073A1 (en) * | 2007-08-31 | 2009-03-04 | TC LAND Expression | Diagnostic of immune graft tolerance using TMTC3 gene expression levels |
| WO2009127644A1 (en) * | 2008-04-15 | 2009-10-22 | Rainer Oberbauer | Markers of acute kidney failure |
| US20150293131A1 (en) * | 2012-04-02 | 2015-10-15 | Astute Medical, Inc. | Methods and compositions for diagnosis and prognosis of sepsis |
| EP2671574A1 (en) * | 2012-06-04 | 2013-12-11 | VitaK B.V. | Use of vitamin K to decrease allograft failure and patient mortality after organ transplantation |
| WO2013182579A1 (en) | 2012-06-04 | 2013-12-12 | Vitak B.V. | New biomarkers to estimate the risk of allograft failure and patient mortality after organ transplantation |
| WO2016097259A1 (en) * | 2014-12-19 | 2016-06-23 | INSERM (Institut National de la Santé et de la Recherche Médicale) | Methods for predicting graft alterations |
| US10961580B2 (en) | 2014-12-19 | 2021-03-30 | INSERM (Institut National de la Santé et de la Recherche Médicale) | Methods for predicting graft alterations |
| CN110960672A (zh) * | 2019-12-18 | 2020-04-07 | 西南民族大学 | 一种提高牦牛免疫能力的aif-1蛋白注射液 |
Also Published As
| Publication number | Publication date |
|---|---|
| JP4316617B2 (ja) | 2009-08-19 |
| WO2005054503A3 (en) | 2005-07-21 |
| JP2009195234A (ja) | 2009-09-03 |
| JP2007520209A (ja) | 2007-07-26 |
| US20090269334A1 (en) | 2009-10-29 |
| US20120039868A1 (en) | 2012-02-16 |
| EP1694860A2 (en) | 2006-08-30 |
| US20070111210A1 (en) | 2007-05-17 |
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