US6414223B1 - Plants, seeds and oils having an elevated total monounsaturated fatty acid content - Google Patents

Plants, seeds and oils having an elevated total monounsaturated fatty acid content Download PDF

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US6414223B1
US6414223B1 US09/128,602 US12860298A US6414223B1 US 6414223 B1 US6414223 B1 US 6414223B1 US 12860298 A US12860298 A US 12860298A US 6414223 B1 US6414223 B1 US 6414223B1
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Dharma R. Kodali
Zhegong Fan
Lorin R. DeBonte
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Cargill Inc
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Cargill Inc
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Priority to JP2000563130A priority patent/JP2002528050A/ja
Priority to EP99938983A priority patent/EP1100310B1/en
Priority to CNB998102563A priority patent/CN1184878C/zh
Priority to AT99938983T priority patent/ATE388234T1/de
Priority to BR9912710-5A priority patent/BR9912710A/pt
Priority to PL99345974A priority patent/PL345974A1/xx
Priority to CA002337984A priority patent/CA2337984A1/en
Priority to PCT/US1999/017645 priority patent/WO2000007433A1/en
Priority to AU53353/99A priority patent/AU772286B2/en
Priority to DE69938306T priority patent/DE69938306T2/de
Priority to US09/995,297 priority patent/US6649782B2/en
Publication of US6414223B1 publication Critical patent/US6414223B1/en
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    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00—Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/0004—Oxidoreductases (1.)
    • C12N9/0071—Oxidoreductases (1.) acting on paired donors with incorporation of molecular oxygen (1.14)
    • C12N9/0083—Miscellaneous (1.14.99)
    • A—HUMAN NECESSITIES
    • A01—AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
    • A01H—NEW PLANTS OR NON-TRANSGENIC PROCESSES FOR OBTAINING THEM; PLANT REPRODUCTION BY TISSUE CULTURE TECHNIQUES
    • A01H5/00—Angiosperms, i.e. flowering plants, characterised by their plant parts; Angiosperms characterised otherwise than by their botanic taxonomy
    • A01H5/10—Seeds
    • C—CHEMISTRY; METALLURGY
    • C10—PETROLEUM, GAS OR COKE INDUSTRIES; TECHNICAL GASES CONTAINING CARBON MONOXIDE; FUELS; LUBRICANTS; PEAT
    • C10M—LUBRICATING COMPOSITIONS; USE OF CHEMICAL SUBSTANCES EITHER ALONE OR AS LUBRICATING INGREDIENTS IN A LUBRICATING COMPOSITION
    • C10M159/00—Lubricating compositions characterised by the additive being of unknown or incompletely defined constitution
    • C10M159/02—Natural products
    • C10M159/08—Fatty oils
    • C—CHEMISTRY; METALLURGY
    • C11—ANIMAL OR VEGETABLE OILS, FATS, FATTY SUBSTANCES OR WAXES; FATTY ACIDS THEREFROM; DETERGENTS; CANDLES
    • C11B—PRODUCING, e.g. BY PRESSING RAW MATERIALS OR BY EXTRACTION FROM WASTE MATERIALS, REFINING OR PRESERVING FATS, FATTY SUBSTANCES, e.g. LANOLIN, FATTY OILS OR WAXES; ESSENTIAL OILS; PERFUMES
    • C11B1/00—Production of fats or fatty oils from raw materials
    • C—CHEMISTRY; METALLURGY
    • C11—ANIMAL OR VEGETABLE OILS, FATS, FATTY SUBSTANCES OR WAXES; FATTY ACIDS THEREFROM; DETERGENTS; CANDLES
    • C11B—PRODUCING, e.g. BY PRESSING RAW MATERIALS OR BY EXTRACTION FROM WASTE MATERIALS, REFINING OR PRESERVING FATS, FATTY SUBSTANCES, e.g. LANOLIN, FATTY OILS OR WAXES; ESSENTIAL OILS; PERFUMES
    • C11B3/00—Refining fats or fatty oils
    • C11B3/001—Refining fats or fatty oils by a combination of two or more of the means hereafter
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/79—Vectors or expression systems specially adapted for eukaryotic hosts
    • C12N15/82—Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
    • C12N15/8241—Phenotypically and genetically modified plants via recombinant DNA technology
    • C12N15/8242—Phenotypically and genetically modified plants via recombinant DNA technology with non-agronomic quality (output) traits, e.g. for industrial processing; Value added, non-agronomic traits
    • C12N15/8243—Phenotypically and genetically modified plants via recombinant DNA technology with non-agronomic quality (output) traits, e.g. for industrial processing; Value added, non-agronomic traits involving biosynthetic or metabolic pathways, i.e. metabolic engineering, e.g. nicotine, caffeine
    • C12N15/8247—Phenotypically and genetically modified plants via recombinant DNA technology with non-agronomic quality (output) traits, e.g. for industrial processing; Value added, non-agronomic traits involving biosynthetic or metabolic pathways, i.e. metabolic engineering, e.g. nicotine, caffeine involving modified lipid metabolism, e.g. seed oil composition
    • C—CHEMISTRY; METALLURGY
    • C10—PETROLEUM, GAS OR COKE INDUSTRIES; TECHNICAL GASES CONTAINING CARBON MONOXIDE; FUELS; LUBRICANTS; PEAT
    • C10M—LUBRICATING COMPOSITIONS; USE OF CHEMICAL SUBSTANCES EITHER ALONE OR AS LUBRICATING INGREDIENTS IN A LUBRICATING COMPOSITION
    • C10M2207/00—Organic non-macromolecular hydrocarbon compounds containing hydrogen, carbon and oxygen as ingredients in lubricant compositions
    • C10M2207/10—Carboxylix acids; Neutral salts thereof
    • C10M2207/12—Carboxylix acids; Neutral salts thereof having carboxyl groups bound to acyclic or cycloaliphatic carbon atoms
    • C10M2207/125—Carboxylix acids; Neutral salts thereof having carboxyl groups bound to acyclic or cycloaliphatic carbon atoms having hydrocarbon chains of eight up to twenty-nine carbon atoms, i.e. fatty acids
    • C—CHEMISTRY; METALLURGY
    • C10—PETROLEUM, GAS OR COKE INDUSTRIES; TECHNICAL GASES CONTAINING CARBON MONOXIDE; FUELS; LUBRICANTS; PEAT
    • C10M—LUBRICATING COMPOSITIONS; USE OF CHEMICAL SUBSTANCES EITHER ALONE OR AS LUBRICATING INGREDIENTS IN A LUBRICATING COMPOSITION
    • C10M2207/00—Organic non-macromolecular hydrocarbon compounds containing hydrogen, carbon and oxygen as ingredients in lubricant compositions
    • C10M2207/10—Carboxylix acids; Neutral salts thereof
    • C10M2207/12—Carboxylix acids; Neutral salts thereof having carboxyl groups bound to acyclic or cycloaliphatic carbon atoms
    • C10M2207/129—Carboxylix acids; Neutral salts thereof having carboxyl groups bound to acyclic or cycloaliphatic carbon atoms having hydrocarbon chains of thirty or more carbon atoms
    • C—CHEMISTRY; METALLURGY
    • C10—PETROLEUM, GAS OR COKE INDUSTRIES; TECHNICAL GASES CONTAINING CARBON MONOXIDE; FUELS; LUBRICANTS; PEAT
    • C10M—LUBRICATING COMPOSITIONS; USE OF CHEMICAL SUBSTANCES EITHER ALONE OR AS LUBRICATING INGREDIENTS IN A LUBRICATING COMPOSITION
    • C10M2207/00—Organic non-macromolecular hydrocarbon compounds containing hydrogen, carbon and oxygen as ingredients in lubricant compositions
    • C10M2207/40—Fatty vegetable or animal oils
    • C—CHEMISTRY; METALLURGY
    • C10—PETROLEUM, GAS OR COKE INDUSTRIES; TECHNICAL GASES CONTAINING CARBON MONOXIDE; FUELS; LUBRICANTS; PEAT
    • C10M—LUBRICATING COMPOSITIONS; USE OF CHEMICAL SUBSTANCES EITHER ALONE OR AS LUBRICATING INGREDIENTS IN A LUBRICATING COMPOSITION
    • C10M2207/00—Organic non-macromolecular hydrocarbon compounds containing hydrogen, carbon and oxygen as ingredients in lubricant compositions
    • C10M2207/40—Fatty vegetable or animal oils
    • C10M2207/404—Fatty vegetable or animal oils obtained from genetically modified species
    • C—CHEMISTRY; METALLURGY
    • C10—PETROLEUM, GAS OR COKE INDUSTRIES; TECHNICAL GASES CONTAINING CARBON MONOXIDE; FUELS; LUBRICANTS; PEAT
    • C10N—INDEXING SCHEME ASSOCIATED WITH SUBCLASS C10M RELATING TO LUBRICATING COMPOSITIONS
    • C10N2040/00—Specified use or application for which the lubricating composition is intended
    • C10N2040/08—Hydraulic fluids, e.g. brake-fluids

Definitions

  • This invention relates to fatty acid desaturases and nucleic acids encoding desaturase proteins. More particularly, the invention relates to nucleic acids encoding delta-12 and delta-15 fatty acid desaturase proteins that affect fatty acid composition in plants, polypeptides produced from such nucleic acids and plants expressing such nucleic acids.
  • Alterations in fatty acid composition of vegetable oils is desirable for meeting specific food and industrial uses.
  • Brassica canola varieties with increased monounsaturate levels (oleic acid) in the seed oil, and products derived from such oil, would improve lipid nutrition.
  • Canola lines which are low in polyunsaturated fatty acids and high in oleic acid tend to have higher oxidative stability, which is a useful trait for the retail food industry.
  • Useful traits of vegetable oils for industrial uses like lubrication fluids include desirable low temperature behavior such as low pour point and low cloud point along with very high oxidative stability.
  • Delta-12 fatty acid desaturase (also known as oleic desaturase) is involved in the enzymatic conversion of oleic acid to linoleic acid.
  • Delta-15 fatty acid desaturase (also known as linoleic acid desaturase) is involved in the enzymatic conversion of linoleic acid to ⁇ -linolenic acid.
  • a microsomal delta-12 desaturase has been cloned and characterized using T-DNA tagging. Okuley, et al., Plant Cell 6:147-158 (1994). The nucleotide sequences of higher plant genes encoding microsomal delta-12 fatty acid desaturase are described in Lightner et al., WO94/11516.
  • Triacylglycerols containing fatty acids with heterogenous chain lengths and with high monounsaturate levels can provide useful traits for industrial purposes. Plants with fatty acid compositions that have high monounsaturate levels and heterogenous chain lengths would provide a source of industrial oils for uses such as lubrication.
  • the invention features a Brassica plant, and progeny thereof, producing seeds having a long chain monounsaturated fatty acid content of at least about 82% and an erucic acid content of at least about 15% based on total fatty acid composition.
  • the oleic acid and eicosenoic acid content of the seeds is at least about 37% and at least about 14%, based on total fatty acid composition, respectively.
  • the saturated fatty acid content of such seeds is less than 7% and the polyunsaturated fatty acid content is less than about 11%.
  • the plants have a monounsaturated fatty acid content of from about 85% to about 90% and an erucic acid content of at least about 15% based on total fatty acid composition.
  • the oleic acid content can be at least about 42% and in particular, from about 47% to about 56% based on total fatty acid composition.
  • the erucic acid content is from about 17% to about 31%, and the eicosenoic acid content is from about 15% to about 21%.
  • the invention also features a Brassica seed oil having a long chain monounsaturated fatty acid content of at least about 82% and an erucic acid content of at least about 15% based on total fatty acid composition.
  • Such oils can have an oleic acid and eicosenoic acid content of at least about 14% and 37%, respectively, based on total fatty acid composition.
  • the saturated fatty acid content is less than about 7%.
  • the polyunsaturated fatty acid content is less than about 11% and in particular embodiments, less than 9%, based on total fatty acid composition.
  • the Brassica seed oil contains a long chain monounsaturated fatty acid content of from about 85% to about 90%.
  • the oleic acid content is at least about 42%, and in particular embodiments, is from about 47% to about 56%, based on total fatty acid composition.
  • the erucic acid and eicosenoic acid content is from about 17% to about 31% and from about 15% to about 21%, respectively, based on total fatty acid composition.
  • the invention also features a method of producing plants having a long chain monounsaturated fatty acid content of at least about 82% and an erucic acid content of at least about 15%, based on total fatty acid composition.
  • the methods include crossing a first plant line with a second plant line and selecting progeny with the desired fatty acid composition.
  • the first plant line has an erucic acid content of at least about 45%.
  • the second plant line has an oleic acid content of at least about 84%.
  • SEQ ID NO:1 shows a hypothetical DNA sequence of a Brassica Fad2 gene.
  • SEQ ID NO:2 is the deduced amino acid sequence of SEQ ID NO:1.
  • SEQ ID NO:3 shows a hypothetical DNA sequence of a Brassica Fad2 gene having a mutation at nucleotide 316.
  • SEQ ID NO:4 is the deduced amino acid sequence of SEQ ID NO:3.
  • SEQ ID NO:5 shows a hypothetical DNA sequence of a Brassica Fad2 gene.
  • SEQ ID NO:6 is the deduced amino acid sequence of SEQ ID NO:5.
  • SEQ ID NO:7 shows a hypothetical DNA sequence of a Brassica Fad2 gene having a mutation at nucleotide 515.
  • SEQ ID NO:8 is the deduced amino acid sequence of SEQ ID NO:7.
  • SEQ ID NO:9 shows the DNA sequence for the coding region of a wild type Brassica Fad2-D gene.
  • SEQ ID NO:10 is the deduced amino acid sequence for SEQ ID NO:9.
  • SEQ ID NO:11 shows the DNA sequence for the coding region of the IMC 129 mutant Brassica Fad2-D gene.
  • SEQ ID NO: 12 is the deduced amino acid sequence for SEQ ID NO:11.
  • SEQ ID NO:13 shows the DNA sequence for the coding region of a wild type Brassica Fad2-F gene.
  • SEQ ID NO:14 is the deduced amino acid sequence for SEQ ID NO:13.
  • SEQ ID NO:15 shows the DNA sequence for the coding region of the Q508 mutant Brassica Fad2-F gene.
  • SEQ ID NO: 16 is the deduced amino acid sequence for SEQ ID NO: 15.
  • SEQ ID NO:17 shows the DNA sequence for the coding region of the Q4275 mutant Brassica Fad2-F gene.
  • SEQ ID NO: 18 is the deduced amino acid sequence for SEQ ID NO:17.
  • FIG. 1 is a histogram showing the frequency distribution of seed oil oleic acid (C 18:1 ) content in a segregating population of a Q508 X Westar cross.
  • the bar labeled WSGA 1A represents the C 18:1 content of the Westar parent.
  • the bar labeled Q508 represents the C 18:1 content of the Q508 parent.
  • FIG. 2A-H shows the nucleotide sequences for a Brassica Fad2-D wild type gene (Fad2-D wt; SEQ ID NO:9), IMC129 mutant gene (Fad2-D GA316 IMC129; SEQ ID NO:11), Fad2-F wild type gene (Fad2-F wt; SEQ ID NO:13), Q508 mutant gene (Fad2-F TAS515 Q508; SEQ ID NO:15) and Q4275 mutant gene (Fad2-F GA908 Q4275; SEQ ID NO:17).
  • FIG. 3A-E shows the deduced amino acid sequences (SEQ ID NOS:10, 12, 14, 16, and 18) for the polynucleotides of FIG. 2 .
  • FIG. 4 is a schematic of a breeding procedure used to produce Brassica plants having a high erucic acid and a high oleic acid content.
  • a “line” is a group of plants that display little or no genetic variation between individuals for at least one trait. Such lines may be created by several generations of self-pollination and selection, or vegetative propagation from a single parent using tissue or cell culture techniques. As used herein, the term “variety” refers to a line which is used for commercial production.
  • mutagenesis refers to the use of a mutagenic agent to induce random genetic mutations within a population of individuals.
  • the treated population, or a subsequent generation of that population, is then screened for usable trait(s) that result from the mutations.
  • a “population” is any group of individuals that share a common gene pool.
  • M 0 is untreated seed.
  • M 1 is the seed (and resulting plants) exposed to a mutagenic agent
  • M 2 is the progeny (seeds and plants) of self-pollinated M 1 plants
  • M 3 is the progeny of self-pollinated M 2 plants
  • M 4 is the progeny of self-pollinated M 3 plants
  • M 5 is the progeny of self-pollinated M 4 plants.
  • M 6 ”, “M 7 ”, etc. are each the progeny of self-pollinated plants of the previous generation.
  • selfed as used herein means self-pollinated.
  • “Stability” or “stable” as used herein means that with respect to a given fatty acid component, the component is maintained from generation to generation for at least two generations and preferably at least three generations at substantially the same level, e.g., preferably ⁇ 5%.
  • the method of invention is capable of creating lines with improved fatty acid compositions stable up to ⁇ 5% from generation to generation.
  • the above stability may be affected by temperature, location, stress and time of planting. Thus, comparison of fatty acid profiles should be made from seeds produced under similar growing conditions. Stability may be measured based on knowledge of prior generation.
  • Brassica plants whose seed oil contains less than 2% erucic acid.
  • the same varieties have also been bred so that the defatted meal contains less than 30 ⁇ mol glucosinolates/gram.
  • “Canola” as used herein refers to plant seeds or oils which contain less than 2% erucic acid (C 22:1 ), and result in a defatted meal with less than 30 ⁇ mol glucosinolates/gram.
  • Applicants have discovered plants with mutations in a delta-12 fatty acid desaturase gene. Such plants have useful alterations in the fatty acid compositions of the seed oil. Such mutations confer, for example, an elevated oleic acid content, a decreased, stabilized linoleic acid content, or both elevated oleic acid and decreased, stabilized linoleic acid content.
  • Applicants have further discovered plants with mutations in a delta-15 fatty acid desaturase gene. Such plants have useful alterations in the fatty acid composition of the seed oil, e.g., a decreased, stabilized level of ⁇ -linolenic acid.
  • nucleic acid fragments comprising sequences that carry mutations within the coding sequence of delta-12 or delta-15 fatty acid desaturases.
  • the mutations confer desirable alterations in fatty acid levels in the seed oil of plants carrying such mutations.
  • Delta-12 fatty acid desaturase is also known as omega-6 fatty acid desaturase and is sometimes referred to herein as Fad2 or 12-DES.
  • Delta-15 fatty acid desaturase is also known on omega-3 fatty acid desaturase and is sometimes referred to herein as Fad3 or 15-DES.
  • a nucleic acid fragment of the invention may be in the form of RNA or in the form of DNA, including cDNA, synthetic DNA or genomic DNA.
  • the DNA may be double-stranded or single-stranded, and if single-stranded, can be either the coding strand or non-coding strand.
  • An RNA analog may be, for example, mRNA or a combination of ribo- and deoxyribonucleotides.
  • Illustrative examples of a nucleic acid fragment of the invention are the mutant sequences shown in FIG. 3 .
  • a nucleic acid fragment of the invention contains a mutation in a microsomal delta-12 fatty acid desaturase coding sequence or a mutation in a microsomal delta-15 fatty acid desaturase coding sequence.
  • Such a mutation renders the resulting desaturase gene product non-functional in plants, relative to the function of the gene product encoded by the wild-type sequence.
  • the non-functionality of the delta-12 desaturase gene product can be inferred from the decreased level of reaction product (linoleic acid) and increased level of substrate (oleic acid) in plant tissues expressing the mutant sequence, compared to the corresponding levels in plant tissues expressing the wild-type sequence.
  • the non-functionality of the delta-15 desaturase gene product can be inferred from the decreased level of reaction product ( ⁇ -linolenic acid) and the increased level of substrate (linoleic acid) in plant tissues expressing the mutant sequence, compared to the corresponding levels in plant tissues expressing the wild-type sequence.
  • a nucleic acid fragment of the invention may comprise a portion of the coding sequence, e.g., at least about 10 nucleotides, provided that the fragment contains at least one mutation in the coding sequence.
  • the length of a desired fragment depends upon the purpose for which the fragment will be used, e.g., PCR primer, site-directed mutagenesis and the like.
  • a nucleic acid fragment of the invention comprises the full length coding sequence of a mutant delta-12 or mutant delta-15 fatty acid desaturase, e.g., the mutant sequences of FIG. 3 .
  • a nucleic acid fragment is about 20 to about 50 nucleotides (or base pairs, bp), or about 50 to about 500 nucleotides, or about 500 to about 1200 nucleotides in length.
  • Desirable alterations in fatty acid levels in the seed oil of plants can be produced using a ribozyme.
  • Ribozyme molecules designed to cleave delta-12 or delta-15 desaturase mRNA transcripts can be used to prevent expression of delta-12 or delta-15 desaturases. While various ribozymes that cleave mRNA at site-specific recognition sequences can be used to destroy desaturase mRNAs, hammerhead ribozymes are particularly useful. Hammerhead ribozymes cleave mRNAs at locations dictated by flanking regions that form complementary base pairs with the target mRNA. The sole requirement is that the target RNA contain a 5′-UG-3′ nucleotide sequence.
  • RNA endoribonucleases such as the one that occurs naturally in Tetrahymena thermophila, and which have been described extensively by Cech and collaborators are also useful. See, for example, U.S. Pat. No. 4,987,071.
  • a mutation in a nucleic acid fragment of the invention may be in any portion of the coding sequence that renders the resulting gene product non-functional. Suitable types of mutations include, without limitation, insertions of nucleotides, deletions of nucleotides, or transitions and transversions in the wild-type coding sequence. Such mutations result in insertions of one or more amino acids, deletions of one or more amino acids, and non-conservative amino acid substitutions in the corresponding gene product.
  • the sequence of a nucleic acid fragment may comprise more than one mutation or more than one type of mutation.
  • Insertion or deletion of amino acids in a coding sequence may, for example, disrupt the conformation of essential alpha-helical or beta-pleated sheet regions of the resulting gene product. Amino acid insertions or deletions may also disrupt binding or catalytic sites important for gene product activity. It is known in the art that the insertion or deletion of a larger number of contiguous amino acids is more likely to render the gene product non-functional, compared to a smaller number of inserted or deleted amino acids.
  • Non-conservative amino acid substitutions may replace an amino acid of one class with an amino acid of a different class. Non-conservative substitutions may make a substantial change in the charge or hydrophobicity of the gene product. Non-conservative amino acid substitutions may also make a substantial change in the bulk of the residue side chain, e.g., substituting an alanyl residue for a isoleucyl residue.
  • non-conservative substitutions include the substitution of a basic amino acid for a non-polar amino acid, or a polar amino acid for an acidic amino acid. Because there are only 20 amino acids encoded in a gene, substitutions that result in a non-functional gene product may be determined by routine experimentation, incorporating amino acids of a different class in the region of the gene product targeted for mutation.
  • Preferred mutations are in a region of the nucleic acid encoding an amino acid sequence motif that is conserved among delta-12 fatty acid desaturases or delta-15 fatty acid desaturases, such as a His-Xaa-Xaa-Xaa-His motif (Tables 1-3).
  • An example of a suitable region has a conserved HECGH motif (SEQ ID NO:60) that is found, for example, in nucleotides corresponding to amino acids 105 to 109 of the Arabidopsis and Brassica delta-12 desaturase sequences, in nucleotides corresponding to amino acids 101 to 105 of the soybean delta-12 desaturase sequence and in nucleotides corresponding to amino acids 111 to 115 of the maize delta-12 desaturase sequence. See e.g., WO 94/11516; Okuley et al., Plant Cell 6:147-158 (1994). The one letter amino acid designations used herein are described in Alberts, B.
  • An illustrative embodiment of a mutation in a nucleic acid fragment of the invention is a Glu to Lys substitution in the HECGH motif (SEQ ID NO:60) of a Brassica microsomal delta-12 desaturase sequence, either the D form or the F form.
  • This mutation results in the sequence H E CGH (SEQ ID NO:60) being changed to H K CGH (SEQ ID NO:58) as seen by comparing amino acids 105-109 of SEQ ID NO:10 (wild-type D form) to amino acids 105-109 of SEQ ID NO:12 (mutant D form).
  • a similar mutation in other Fad-2 sequences is contemplated to result in a non-functional gene product. (Compare SEQ ID NO:2 to SEQ ID NO:4).
  • a similar motif may be found at amino acids 101 to 105 of the Arabidopsis microsomal delta-15 fatty acid desaturase, as well as in the corresponding rape and soybean desaturases (Table 5). See, e.g., WO 93/11245; Arondel, V. et al., Science, 258:1153-1155 (1992); Yadav, N. et al., Plant Physiol., 103:467-476 (1993). Plastid delta-15 fatty acids have a similar motif (Table 5).
  • non-conservative substitutions are non-conservative substitutions.
  • An illustrative example of a non-conservative substitution is substitution of a glycine residue for either the first or second histidine. Such a substitution replaces a charged residue (histidine) with a non-polar residue (glycine).
  • Another type of mutation that renders the resulting gene product non-functional is an insertion mutation, e.g., insertion of a glycine between the cysteine and glutamic acid residues in the HECGH motif (SEQ ID NO:60).
  • regions having suitable conserved amino acid motifs include the HRRHH motif (SEQ ID NO:61) shown in Table 2, the HRTHH motif (SEQ ID NO:62) shown in Table 6 and the HVAHH motif (SEQ ID NO:63) shown in Table 3. See, e.g., WO 94/11516; Hitz, W. et al., Plant Physiol., 105:635-641 (1994); Okuley, J., et al., supra; and Yadav, N. et al., supra.
  • An illustrative example of a mutation in the region shown in Table 3 is a mutation at nucleotides corresponding to the codon for glycine (amino acid 303 of B. napus ).
  • a non-conservative Gly to Glu substitution results in the amino acid sequence DRDYGILNKV (SEQ ID NO:47; amino acids 299-308 of SEQ ID NO:14) being changed to sequence DRDYEILNKV (SEQ ID NO:50; amino acids 299-308 of SEQ ID NO:18) (compare wild-type F form SEQ ID NO: 14 to mutant Q4275 SEQ ID NO: 18, FIG. 3 ).
  • Another region suitable for a mutation in a delta-12 desaturase sequence contains the motif KYLNNP (SEQ ID NO:64) at nucleotides corresponding to amino acids 170 to 175 of the Brassica desaturase sequence.
  • An illustrative example of a mutation is this region is a Leu to His substitution, resulting in the amino acid sequence (Table 4) KYHNNP (SEQ ID NO:53; compare wild-type Fad2-F amino acids 170-175 of SEQ ID NO:14 to mutant Fad2-F amino acids 170-175 of SEQ ID NO:16).
  • a similar mutation in other Fad-2 amino acid sequences is contemplated to result in a non-functional gene product. (Compare SEQ ID NO:6 to SEQ ID NO:8).
  • a nucleic acid fragment containing a mutant sequence can be generated by techniques known to the skilled artisan. Such techniques include, without limitation, site-directed mutagenesis of wild-type sequences and direct synthesis using automated DNA synthesizers.
  • a nucleic acid fragment containing a mutant sequence can also be generated by mutagenesis of plant seeds or regenerable plant tissue by, e.g., ethyl methane sulfonate, X-rays or other mutagens.
  • mutant plants having the desired fatty acid phenotype in seeds are identified by known techniques and a nucleic acid fragment containing the desired mutation is isolated from genomic DNA or RNA of the mutant line.
  • the site of the specific mutation is then determined by sequencing the coding region of the delta-12 desaturase or delta-15 desaturase gene.
  • labeled nucleic acid probes that are specific for desired mutational events can be used to rapidly screen a mutagenized population.
  • the disclosed method may be applied to all oilseed Brassica species, and to both Spring and Winter maturing types within each species.
  • Physical mutagens including but not limited to X-rays, UV rays, and other physical treatments which cause chromosome damage, and other chemical mutagens, including but not limited to ethidium bromide, nitrosoguanidine, diepoxybutane etc. may also be used to induce mutations.
  • the mutagenesis treatment may also be applied to other stages of plant development, including but not limited to cell cultures, embryos, microspores and shoot apices.
  • “Stable mutations” as used herein are defined as M 5 or more advanced lines which maintain a selected altered fatty acid profile for a minimum of three generations, including a minimum of two generations under field conditions, and exceeding established statistical thresholds for a minimum of two generations, as determined by gas chromatographic analysis of a minimum of 10 randomly selected seeds bulked together. Alternatively, stability may be measured in the same way by comparing to subsequent generations. In subsequent generations, stability is defined as having similar fatty acid profiles in the seed as that of the prior or subsequent generation when grown under substantially similar conditions.
  • Mutation breeding has traditionally produced plants carrying, in addition to the trait of interest, multiple, deleterious traits, e.g., reduced plant vigor and reduced fertility. Such traits may indirectly affect fatty acid composition, producing an unstable mutation; and/or reduce yield, thereby reducing the commercial utility of the invention.
  • a low mutagen dose is used in the seed treatments to create an LD30 population. This allows for the rapid selection of single gene mutations for fatty acid traits in agronomic backgrounds which produce acceptable yields.
  • each form may be derived from one of the parent genomes making up the species under consideration. Plants with mutations in both forms have a fatty acid profile that differs from plants with a mutation in only one form.
  • An example of such a plant is Brassica napus line Q508, a doubly-mutagenized line containing a mutant D-form of delta-12 desaturase (SEQ ID NO:11) and a mutant F-form of delta-12 desaturase (SEQ ID NO:15).
  • line Q4275 which contains a mutant D-form of delta-12 desaturase (SEQ ID NO:11) and a mutant F-form of delta-12 desaturase (SEQ ID NO:17). See FIGS. 2-3.
  • Preferred host or recipient organisms for introduction of a nucleic acid fragment of the invention are the oil-producing species, such as soybean ( Glycine max ), rapeseed (e.g., Brassica napus, B. rapa and B. juncea ), sunflower ( Helianthus annus ), castor bean ( Ricinus communis ), corn ( Zea mays ), and safflower ( Carthamus tinctorius ).
  • soybean Glycine max
  • rapeseed e.g., Brassica napus, B. rapa and B. juncea
  • sunflower Helianthus annus
  • castor bean Ricinus communis
  • corn Zea mays
  • safflower Carthamus tinctorius
  • a nucleic acid fragment of the invention may further comprise additional nucleic acids.
  • a nucleic acid encoding a secretory or leader amino acid sequence can be linked to a mutant desaturase nucleic acid fragment such that the secretory or leader sequence is fused in-frame to the amino terminal end of a mutant delta-12 or delta-15 desaturase polypeptide.
  • Other nucleic acid fragments are known in the art that encode amino acid sequences useful for fusing in-frame to the mutant desaturase polypeptides disclosed herein. See, e.g., U.S. Pat. No. 5,629,193 incorporated herein by reference.
  • a nucleic acid fragment may also have one or more regulatory elements operably linked thereto.
  • the present invention also comprises nucleic acid fragments that selectively hybridize to mutant desaturase sequences.
  • a nucleic acid fragment typically is at least 15 nucleotides in length.
  • Hybridization typically involves Southern analysis (Southern blotting), a method by which the presence of DNA sequences in a target nucleic acid mixture are identified by hybridization to a labeled oligonucleotide or DNA fragment probe.
  • Southern analysis typically involves electrophoretic separation of DNA digests on agarose gels, denaturation of the DNA after electrophoretic separation, and transfer of the DNA to nitrocellulose, nylon, or another suitable membrane support for analysis with a radiolabeled, biotinylated, or enzyme-labeled probe as described in sections 9.37-9.52 of Sambrook et al., (1989) Molecular Cloning, second edition, Cold Spring Harbor Laboratory, Plainview; N.Y.
  • a nucleic acid fragment can hybridize under moderate stringency conditions or, preferably, under high stringency conditions to a mutant desaturase sequence.
  • High stringency conditions are used to identify nucleic acids that have a high degree of homology to the probe.
  • High stringency conditions can include the use of low ionic strength and high temperature for washing, for example, 0.015 M NaCl/0.0015 M sodium citrate (0.1 ⁇ SSC); 0.1% sodium lauryl sulfate (SDS) at 50-65° C.
  • a denaturing agent such as formamide can be employed during hybridization, e.g., 50% formamide with 0.1% bovine serum albumin/0.1% Ficoll/0.1% polyvinylpyrrolidone/50 mM sodium phosphate buffer at pH 6.5 with 750 mM NaCl, 75 mM sodium citrate at 42° C.
  • Another example is the use of 50% formamide, 5 ⁇ SSC (0.75 M NaCl, 0.075 M sodium citrate), 50 mM sodium phosphate (pH 6.8), 0.1% sodium pyrophosphate, 5 ⁇ Denhardt's solution, sonicated salmon sperm DNA (50 ⁇ g/ml), 0.1% SDS, and 10% dextran sulfate at 42° C., with washes at 42° C. in 0.2 ⁇ SSC and 0.1% SDS.
  • Moderate stringency conditions refers to hybridization conditions used to identify nucleic acids that have a lower degree of identity to the probe than do nucleic acids identified under high stringency conditions.
  • Moderate stringency conditions can include the use of higher ionic strength and/or lower temperatures for washing of the hybridization membrane, compared to the ionic strength and temperatures used for high stringency hybridization.
  • a wash solution comprising 0.060 M NaCl/0.0060 M sodium citrate (4 ⁇ SSC) and 0.1% sodium lauryl sulfate (SDS) can be used at 50° C., with a last wash in 1 ⁇ SSC, at 65° C.
  • a hybridization wash in 1 ⁇ SSC at 37° C. can be used.
  • Hybridization can also be done by Northern analysis (Northern blotting), a method used to identify RNAs that hybridize to a known probe such as an oligonucleotide, DNA fragment, cDNA or fragment thereof, or RNA fragment.
  • the probe is labeled with a radioisotope such as 32 P, by biotinylation or with an enzyme.
  • the RNA to be analyzed can be usually electrophoretically separated on an agarose or polyacrylamide gel, transferred to nitrocellulose, nylon, or other suitable membrane, and hybridized with the probe, using standard techniques well known in the art such as those described in sections 7.39-7.52 of Sambrook et al., supra.
  • a polypeptide of the invention comprises an isolated polypeptide having a mutant amino acid sequence, as well as derivatives and analogs thereof. See, e.g., the mutant amino acid sequences of FIG. 3 .
  • isolated is meant a polypeptide that is expressed and produced in an environment other than the environment in which the polypeptide is naturally expressed and produced. For example, a plant polypeptide is isolated when expressed and produced in bacteria or fungi.
  • a polypeptide of the invention also comprises variants of the mutant desaturase polypeptides disclosed herein, as discussed above.
  • a plant contains both a delta-12 desaturase mutation and a delta-15 desaturase mutation.
  • Such plants can have a fatty acid composition comprising very high oleic acid and very low alpha-linolenic acid levels.
  • Mutations in delta-12 desaturase and delta-15 desaturase may be combined in a plant by making a genetic cross between delta-12 desaturase and delta-15 desaturase single mutant lines.
  • a plant having a mutation in delta-12 fatty acid desaturase is crossed or mated with a second plant having a mutation in delta-15 fatty acid desaturase. Seeds produced from the cross are planted and the resulting plants are selfed in order to obtain progeny seeds. These progeny seeds are then screened in order to identify those seeds carrying both mutant genes.
  • a line possessing either a delta-12 desaturase or a delta-15 desaturase mutation can be subjected to mutagenesis to generate a plant or plant line having mutations in both delta-12 desaturase and delta-15 desaturase.
  • the IMC 129 line has a mutation in the coding region (Glu 106 to Lys 106 ) of the D form of the microsomal delta-12 desaturase structural gene.
  • Cells (e.g., seeds) of this line can be mutagenized to induce a mutation in a delta-15 desaturase gene, resulting in a plant or plant line carrying a mutation in a delta-12 fatty acid desaturase gene and a mutation in a delta-15 fatty acid desaturase gene.
  • Progeny includes descendants of a particular plant or plant line, e.g., seeds developed on an instant plant are descendants.
  • Progeny of an instant plant include seeds formed on F 1 , F 2 , F 3 , and subsequent generation plants, or seeds formed on BC 1 , BC 2 , BC 3 and subsequent generation plants.
  • Plants according to the invention preferably contain an altered fatty acid composition.
  • oil obtained from seeds of such plants may have from about 69 to about 90% oleic acid, based on the total fatty acid composition of the seed. Such oil preferably has from about 74 to about 90% oleic acid, more preferably from about 80 to about 90% oleic acid.
  • oil obtained from seeds produced by plants of the invention may have from about 2.0% to about 5.0% saturated fatty acids, based on total fatty acid composition of the seeds.
  • oil obtained from seeds of the invention may have from about 1.0% to about 14.0% linoleic acid, or from about 0.5% to about 10.0% ⁇ -linolenic acid.
  • Oil composition typically is analyzed by crushing and extracting fatty acids from bulk seed samples (e.g., 10 seeds). Fatty acid triglycerides in the seed are hydrolyzed and converted to fatty acid methyl esters. Those seeds having an altered fatty acid composition may be identified by techniques known to the skilled artisan, e.g., gas-liquid chromatography (GLC) analysis of a bulked seed sample, single seed or a single half-seed.
  • GLC gas-liquid chromatography
  • Half-seed analysis is well known in the art to be useful because the viability of the embryo is maintained and thus those seeds having a desired fatty acid profile may be planted to form the next generation. However, half-seed analysis is also known to be an inaccurate representation of genotype of the seed being analyzed.
  • Fatty acid composition can also be determined on larger samples, e.g., oil obtained by pilot plant or commercial scale refining, bleaching and deodorizing of endogenous oil in the seeds.
  • the nucleic acid fragments of the invention can be used as markers in plant genetic mapping and plant breeding programs.
  • markers may include restriction fragment length polymorphism (RFLP), random amplification polymorphism detection (RAPD), polymerase chain reaction (PCR) or self-sustained sequence replication (3SR) markers, for example.
  • Marker-assisted breeding techniques may be used to identify and follow a desired fatty acid composition during the breeding process. Marker-assisted breeding techniques may be used in addition to, or as an alternative to, other sorts of identification techniques.
  • An example of marker-assisted breeding is the use of PCR primers that specifically amplify a sequence containing a desired mutation in delta-12 desaturase or delta-15 desaturase.
  • Methods according to the invention are useful in that the resulting plants and plant lines have desirable seed fatty acid compositions as well as superior agronomic properties compared to known lines having altered seed fatty acid composition.
  • Superior agronomic characteristics include, for example, increased seed germination percentage, increased seedling vigor, increased resistance to seedling fungal diseases (damping off, root rot and the like), increased yield, and improved standability.
  • Brassica plants producing seeds having a long chain monounsaturated fatty acid content of at least about 82% and an erucic acid content of at least about 15%, based on total fatty acid composition are featured.
  • “long chain” refers to carbon chains of 16 and greater, e.g., chains of 16 to 24 carbons.
  • the long chain monounsaturated fatty acid content is distributed primarily among oleic acid, eicosenoic acid and erucic acid.
  • the heterogenous nature of the long chain monounsaturated fatty acids in the seed oil triacylglycerols confers desirable properties to the oil.
  • High oleic acid lines described herein can be crossed to high erucic acid lines to produce Brassica plants having a high long chain monounsaturated fatty acid content within their seeds.
  • Suitable high oleic acid lines are described, for example, in Example 5 and Table 17, and have an oleic acid content of about 82% to about 85%, based on total fatty acid composition.
  • Suitable high erucic acid lines have an erucic acid content of about 45%, based on total fatty acid composition.
  • Brassica plant line HEC01 is a high erucic acid line that is particularly useful and is sold under the trade name Hero.
  • Seeds of the invention have an oleic acid and eicosenoic acid content of at least about 37% and 14%, respectively, based on total fatty acid composition.
  • the total saturated fatty acid content is less than about 7%.
  • “total saturated fatty acid content” refers to the total of myristate (14:0), palmitate (16:0), stearate (18:0), arachidate (20:0), behenate (22:0) and lignocerate (24:0).
  • the total polyunsaturated content is less than about 11% based on total fatty acid composition.
  • total polyunsaturated fatty acid content refers to the sum of linoleic (18:2), ⁇ -linolenic (18:3), and eicosadienoic (20:2) fatty acids as a percentage of the total fatty acid content.
  • the monounsaturated content is from about 85% to about 90%.
  • the oleic acid content within these seeds is about 42% or greater, and preferably from about 47% to about 56%.
  • the erucic acid and eicosenoic acid content is from about 17% to about 31% and from about 15% to about 21%, respectively.
  • Seed oils having a long chain monounsaturated content of at least about 82% and an erucic acid content of at least about 15%, based on total fatty acid composition are also featured. These oils can be extracted, for example, from a single line of Brassica seeds having a suitable fatty acid composition as described herein.
  • the oleic acid and eicosenoic acid content of these oils is at least about 37% and 14%, respectively, based on total fatty acid composition.
  • the total saturated and polyunsaturated content of these oils is less than about 7% and 11%, respectively.
  • the polyunsaturated content is less than about 9%.
  • the oils have a monounsaturated content of from about 85% to about 90%.
  • the oleic acid content of these oils is at least about 42% and more preferably, from about 47% to about 56%.
  • the oils have an erucic acid content of from about 17% to about 31% and an eicosenoic acid content of from about 15% to about 21%.
  • oils of the invention can be obtained by mixing high-erucic acid rapeseed oil (HEAR) and an oil having at least about 87% oleic acid, preferably from about 90% to about 95% oleic acid, based on total fatty acid composition.
  • HEAR oil has an erucic acid content of about 49% and an oleic acid content of about 16%.
  • Oils having a long chain monounsaturated content of at least about 82% unexpectedly have low temperature properties that are desirable for industrial applications such as lubrication.
  • the basis for these properties is not known, but is it possible that the heterogeneous chain lengths of the triacylglycerols in oils of the invention impede orderly packing as the end methyl groups have a mismatch in molecular volume, reducing Van der Waals interactions.
  • the double bond in each fatty acid moiety is present at different carbon positions along the acyl chain, which may disrupt packing and also reduce ⁇ - ⁇ electronic interactions between adjacent fatty acid chains.
  • the high monounsaturate content is thought to provide improved oxidative stability along with high fluidity characteristics.
  • the low levels of polyunsaturates in oils of the invention also promotes high oxidative stability, since the rates of oxidation of linoleic acid and linolenic acid at 20° C. are 12-20 times and 25 times, respectively, larger than the rate of oxidation of oleic acid.
  • Oxidative stability can be measured with an Oxidative Stability Index Instrument, Omnion, Inc., Rockland, Mass., according to AOCS Official Method Cd 12b-92 (revised 1993). The method is an automated replacement for the Active Oxygen Method (AOM) procedure, AOCS Official Method Cd 12-57.
  • Oxidative stability of oils having a long chain monounsaturated content of at least about 82% is from about 40 AOM hours to about 100 AOM hours in the absence of added antioxidants.
  • mid-oleic canola oil (about 76% oleic acid) and high erucic acid rapeseed oil have oxidative stabilities of about 38 and 16 AOM hours, respectively, in the absence of added antioxidants.
  • the oils of the invention have desirable functional properties, e.g., low temperature behavior and a high viscosity index, along with high oxidative stability.
  • the presence of higher molecular weight fatty acids increases the molecular weight of the triacylglycerols, providing the oil with a higher flash point and a higher fire point.
  • the increased molecular weight also improves the viscosity index of the oils.
  • Viscosity index is an arbitrary number that indicates the viscosity change with temperature of a lubricant.
  • the Dean and Davis viscosity index can be calculated from observed viscosities of a lubricant at 40° C. and 100° C. and can produce values ranging from 0 to values greater than 200.
  • a higher viscosity index value indicates that the viscosity of the oil changes less with a change in temperature. In other words, the higher the viscosity index, the smaller the difference in viscosity between high and low temperatures.
  • An oil of the invention can be formulated for industrial applications such as engine lubricants or as hydraulic fluids by addition of one or more additives to an oil having a long chain monounsaturated fatty acid content of at least about 82% and an erucic acid content of at least about 15%, based on total fatty acid composition.
  • a transmission fluid for diesel engines can be made that includes antioxidants, anti-foam additives, anti-wear additives, corrosion inhibitors, dispersants, detergents, and acid neutralizers, or combinations thereof.
  • Hydraulic oil compositions can include antioxidants, anti-rust additives, anti-wear additives, pour point depressants, viscosity-index improvers and anti-foam additives or combinations thereof. Specific formulations will vary depending on the end use of the oil; suitability of a formulation for a specific end use can be assessed using standard techniques.
  • Typical antioxidants include zinc dithiophosphates, methyl dithiocarbamates, hindered phenols, phenol sulfides, metal phenol sulfides, metal salicylates, aromatic amines, phospho-sulfurized fats and olefins, sulfurized olefins, sulfurized fats and fat derivatives, sulfurized paraffins, sulfurized carboxylic acids, disalieylal-1,2,-propane diamine, 2,4-bis (alkyldithio-1,3,4-thiadiazoles) and dilauryl selenide.
  • Antioxidants are typically present in amounts from about 0.01% to about 5%, based on the weight of the composition. In particular, about 0.01% to about 1.0% of antioxidant is added to an oil of the invention. See U.S. Pat. No. 5,451,334 for additional antioxidants.
  • Rust inhibitors protect surfaces against rust and include, for example, alkylsuccinic type organic acids, and derivatives thereof, alkylthioacetic acids and derivatives thereof, organic amines, organic phosphates, polyhyndric alcohols and sodium and calcium sulphonates.
  • Anti-wear additives adsorb on metal and provide a film that reduces metal-to-metal contact.
  • anti-wear additives include zinc dialkyldithiophosphates, tricresyl phosphate, didodecyl phosphite, sulfurized sperm oil, sulfurized terpenes and zinc dialkyldithiocarbamate, and are used in amounts from about 0.05% to about 4.5%.
  • Corrosion inhibitors include dithiophosphates and in particular, zinc dithiophosphates, metal sulfonates, metal phenate sulfides, fatty acids, acid phosphate esters and alkyl succinic acids.
  • Pour point depressants permit flow of the oil composition below the pour point of the unmodified lubricant.
  • Common pour point depressants include polymethacrylates, wax alkylated naphthalene polymers, wax alkylated phenol polymers and chlorinated polymers and are typically present in amounts of about 1% or less. See, for example, U.S. Pat. Nos. 5,451,334 and 5,413,725.
  • the viscosity-index can be increased by adding polyisobutylenes, polymethacrylates, polyacrylates, ethylene propylene copolymers, styrene isoprene copolymers, styrene butadiene copolymers and styrene maleic ester copolymers.
  • Anti-foam additives reduce or prevent the formation of a stable surface foam and are typically present in amounts from about 0.00003% to about 0.05%.
  • Polymethylsiloxanes, polymethacrylates, salts of alkyl alkylene dithiophosphates, amyl acrylate telomer and poly(2-ethylhexylacrylate-co-ethyl acrylate are non-limiting examples of anti-foam additives.
  • Detergents and dispersants are polar materials that provide a cleaning function.
  • Detergents include metal sulfonates, metal salicylates and metal thiophosponates.
  • Dispersants include polyamine succinimides, hydroxy benzyl polyamines, polyamine succinamides, polyhydroxy succinic esters and polyamine amide imidazolines.
  • Westar a Canadian ( Brassica napus ) spring canola variety
  • Westar is a registered Canadian spring variety with canola quality.
  • the fatty acid composition of field-grown Westar 3.9% C 16:0 , 1.9% C 18:0 , 67.5% C 18:1 , 17.6% C 18:2 , 7.4% C 18:3 , ⁇ 2% C20:1+C 22:1 , has remained stable under commercial production, with ⁇ 10% deviation, since 1982.
  • M 2 seed from individual plants were individually catalogued and stored, approximately 15,000 M 2 lines was planted in a summer nursery in Carman, Manitoba.
  • the seed from each selfed plant were planted in 3-meter rows with 6-inch row spacing.
  • Westar was planted as the check variety.
  • Selected lines in the field were selfed by bagging the main raceme of each plant. At maturity, the selfed plants were individually harvested and seeds were catalogued and stored to ensure that the source of the seed was known.
  • the selected M 3 seeds were planted in the greenhouse along with Westar controls.
  • the seed was sown in 4-inch pots containing Pro-Mix soil and the plants were maintained at 25° C./15° C., 14/10 hr day/night cycle in the greenhouse.
  • the terminal raceme was self-pollinated by bagging.
  • selfed M 4 seed was individually harvested from each plant, labelled, and stored to ensure that the source of the seed was known.
  • the M 4 seed was analyzed in 10-seed bulk samples. Statistical thresholds for each fatty acid component were established from 259 control samples using a Z-distribution of 1 in 800. Selected M 4 lines were planted in a field trial in Carman, Manitoba in 3-meter rows with 6-inch spacing. Ten M 4 plants in each row were bagged for self-pollination. At maturity, the selfed plants were individually harvested and the open pollinated plants in the row were bulk harvested. The M 5 seed from single plant selections was analyzed in 10-seed bulk samples and the bulk row harvest in 50-seed bulk samples.
  • Selected M 6 lines were entered into field trials in Eastern Idaho.
  • the four trial locations were selected for the wide variability in growing conditions.
  • the locations included Burley, Tetonia, Lamont and Shelley (Table 7).
  • the lines were planted in four 3-meter rows with an 8-inch spacing, each plot was replicated four times.
  • the planting design was determined using a Randomized Complete Block Design.
  • the commercial cultivar Westar was used as a check cultivar.
  • Yield of the entries in the trial was determined by taking the statistical average of the four replications.
  • the Least Significant Difference Test was used to rank the entries in the randomized complete block design.
  • dihaploid populations were made from the microspores of the F 1 hybrids. Self-pollinated seed from dihaploid plants were analyzed for fatty acid analysis using methods described previously.
  • 10-seed bulk samples were hand ground with a glass rod in a 15-mL polypropylene tube and extracted in 1.2 mL 0.25 N KOH in 1:1 ether/methanol.
  • the sample was vortexed for 30 sec. and heated for 60 sec. in a 60° C. water bath.
  • Four mL of saturated NaCl and 2.4 mL of iso-octane were added, and the mixture was vortexed again.
  • 600 ⁇ L of the upper organic phase were pipetted into individual vials and stored under nitrogen at ⁇ 5° C.
  • One ⁇ L samples were injected into a Supelco SP-2330 fused silica capillary column (0.25 mm ID, 30 M length, 0.20 ⁇ m df).
  • the gas chromatograph was set at 180° C. for 5.5 minutes, then programmed for a 2° C./minute increase to 212° C., and held at this temperature for 1.5 minutes. Total run time was 23 minutes. Chromatography settings were: Column head pressure—15 psi, Column flow (He)—0.7 mL/min., Auxiliary and Column flow—33 mL/min., Hydrogen flow—33 mL/min., Air flow—400 mL/min., Injector temperature—250° C., Detector temperature—300° C., Split vent—1/15.
  • Table 8 describes the upper and lower statistical thresholds for each fatty acid of interest.
  • This line also stably maintained its mutant fatty acid composition to the M 7 generation in field trials in multiple locations. Over all locations the self-pollinated plants (A129) averaged 78.3% oleic acid. The fatty acid composition of the A129 for each Idaho trial location are summarized in Table 10. In multiple location replicated yield trials, A129 was not significantly different in yield from the parent cultivar Westar.
  • the canola oil of A129 after commercial processing, was found to have superior oxidative stability compared to Westar when measured by the Accelerated Oxygen Method (AOM), American Oil Chemists' Society Official Method Cd 12-57 for fat stability; Active Oxygen Method (revised 1989).
  • AOM Accelerated Oxygen Method
  • AOM of Westar was 18 AOM hours and for A129 was 30 AOM hours.
  • both the oleic acid and linoleic acid desaturase genes approached the mid-parent values indicating a co-dominant gene actions.
  • Fatty acid analysis of the F 2 individuals confirmed a 1:2:1:2:4:2:1:2:1 segregation of two independent, co-dominant genes (Table 12).
  • a line was selected from the cross of A129 and IMC01 and designated as IMC130 (ATCC deposit no. 75446) as described in U.S. patent application Ser. No. 08/425,108, incorporated herein by reference.
  • An additional high oleic acid line designated A128.3, was also produced by the disclosed method.
  • a 50-seed bulk analysis of this line showed the following fatty acid composition: C 16:0 -3.5%, C 18:0 -1.8%, C 18:1 -77.3%, C 18:2 -9.0%, C 18:3 5.6%, FDA Sats—5.3%, Total Sats—6.4%.
  • This line also stably maintained its mutant fatty acid composition to the M 7 generation. In multiple locations replicated yield trials, A128 was not significantly different in yield from the parent cultivar Westar.
  • A129 was crossed to A128.3 for allelism studies. Fatty acid composition of the F 2 seed showed the two lines to be allelic. The mutational events in A129 and A128.3 although different in origin were in the same gene.
  • An additional high oleic acid line designated M3028.-10 (ATCC 75026), was also produced by the disclosed method in Example 1.
  • a 10-seed bulk analysis of this line showed the following fatty acid composition: C 16:0 -3.5%, C 18:0 -1.8%, C 18:1 -77.3% C 18:2 -9.0%, C 18:3 -5.6%, FDA Saturates—5.3%, Total Saturates—6.4%.
  • M3028.10 was not significantly different in yield from the parent cultivar Westar.
  • An additional low linoleic acid line designated M3062.8 (ATCC 75025), was also produced by the disclosed method.
  • a 10-seed bulk analysis of this line showed the following fatty acid composition: C 16:0 -3.8%, C 18:0 -2.3%, C 18:1 -77.1%, C 18:2 -8.9%, C 18:3 -4.3%, FDA Sats—6.1%.
  • This line has also stably maintained its mutant fatty acid composition in the field and greenhouse.
  • MNNG methyl N-nitrosoguanidine
  • the MNNG treatment consisted of three parts: pre-soak, mutagen application, and wash.
  • a 0.05M Sorenson's phosphate buffer was used to maintain pre-soak and mutagen treatment pH at 6.1.
  • Two hundred seeds were treated at one time on filter paper (Whatman #3M) in a petri dish (100 mm ⁇ 15 mm). The seeds were pre-soaked in 15 mls of 0.05M Sorenson's buffer, pH 6.1, under continued agitation for two hours. At the end of the pre-soak period, the buffer was removed from the plate.
  • the seeds were washed with three changes of distilled water at 10 minute intervals. The fourth wash was for thirty minutes. This treatment regime produced an LD60 population.
  • Treated seeds were planted in standard greenhouse potting soil and placed into an environmentally controlled greenhouse. The plants were grown under sixteen hours of light. At flowering, the racemes were bagged to produce selfed seed. At maturity, the M2 seed was harvested. Each M2 line was given an identifying number. The entire MNNG-treated seed population was designated as the Q series.
  • Harvested M2 seeds was planted in the greenhouse. The growth conditions were maintained as previously described. The racemes were bagged at flowering for selfing. At maturity, the selfed M3 seed was harvested and analyzed for fatty acid composition. For each M3 seed line, approximately 10..15 seeds were analyzed in bulk as described in Example 1.
  • High oleic-low linoleic M3 lines were selected from the M3 population using a cutoff of >82% oleic acid and ⁇ 5.0% linoleic. From the first 1600 M3 lines screened for fatty acid composition, Q508 was identified. The Q508 M3 generation was advanced to the M4 generation in the greenhouse. Table 15 shows the fatty acid composition of Q508 and IMC 129. The M4 selfed seed maintained the selected high oleic-low linoleic acid phenotype (Table 16).
  • M 4 generation Q508 plants had poor agronomic qualities in the field compared to Westar. Typical plants were slow growing relative to Westar, lacked early vegetative vigor, were short in stature, tended to be chlorotic and had short pods. The yield of Q508 was very low compared to Westar.
  • the M 4 generation Q508 plants in the greenhouse tended to be reduced in vigor compared to Westar. However, Q508 yields in the greenhouse were greater than Q508 yields in the field.
  • M4 high-oleic low-linoleic lines were also identified: Q3603, Q3733, Q4249, Q6284, Q6601, Q6761, Q7415, Q4275, and Q6676. Some of these lines had good agronomic characteristics and an elevated oleic acid level in seeds of about 80% to about 84%.
  • Q4275 was crossed to the variety Cyclone. After selfing for seven generations, mature seed was harvested from 93GS34-179, a progeny line of the Q4275xCyclone cross. Referring to Table 17, fatty acid composition of a bulk seed sample shows that 93GS34 retained the seed fatty acid composition of Q4275. 93GS34-179 also maintained agronomically desirable characteristics.
  • M 4 generation Q508 plants were crossed to a dihaploid selection of Westar, with Westar serving as the female parent.
  • the resulting F1 seed was termed the 92EF population.
  • About 126 F1 individuals that appeared to have better agronomic characteristics than the Q508 parent were selected for selfing.
  • a portion of the F 2 seed from such individuals was replanted in the field.
  • Each F2 plant was selfed and a portion of the resulting F3 seed was analyzed for fatty acid composition.
  • the content of oleic acid in F 3 seed ranged from 59 to 79%. No high oleic (>80%) individuals were recovered with good agronomic type.
  • the hypothesis also assumes that homozygous Q508 has greater than 85% oleic acid and homozygous Westar has 62-67% oleic acid.
  • the possible genotypes at each gene in a cross of Q508 by Westar may be designated as:
  • Phenotypic # of Ratio Westar Alleles Genotype 1 4 AABB(Westar) 4 3 AABb,AaBB,AABb,AaBB 6 2 AaBb,AAbb,AaBb,AaBb,aaBB,AaBb 4 1 Aabb,aaBb,Aabb,aaBb 1 0 aabb (Q508)
  • the fatty acid composition of representative F3 individuals having greater than 85% oleic acid in seed oil is shown in Table 18.
  • the levels of saturated fatty acids are seen to be decreased in such plants, compared to Westar.
  • Plants of Q508, IMC 129 and Westar were grown in the greenhouse. Mature leaves, primary expanding leaves, petioles and roots were harvested at the 6-8 leaf stage, frozen in liquid nitrogen and stored at ⁇ 70° C. Lipid extracts were analyzed by GLC as described in Example 1. The fatty acid profile data are shown in Table 19. The data in Table 19 indicate that total leaf lipids in Q508 are higher in C 18:1 content than the C 18:2 plus C 18:3 content. The reverse is true for Westar and IMC 129. The difference in total leaf lipids between Q508 and IMC 129 is consistent with the hypothesis that a second Fad2 gene is mutated in Q508.
  • RNA from seeds of IMC 129, Q508 and Westar plants was isolated by standard methods and was used as template.
  • the RT-amplified fragments were used for nucleotide sequence determination.
  • the DNA sequence of each gene from each line was determined from both strands by standard dideoxy sequencing methods.
  • Sequence analysis revealed a G to A transversion at nucleotide 316 (from the translation initiation codon) of the D gene in both IMC 129 and Q508, compared to the sequence of Westar.
  • the transversion changes the codon at this position from GAG to AAG and results in a non-conservative substitution of glutamic acid, an acidic residue, for lysine a basic residue.
  • the presence of the same mutation in both lines was expected since the Q508 line was derived from IMC 129.
  • the same base change was also detected in Q508 and IMC 129 when RNA from leaf tissue was used as template.
  • the G to A mutation at nucleotide 316 was confirmed by sequencing several independent clones containing fragments amplified directly from genomic DNA of IMC 129 and Westar. These results eliminated the possibility of a rare mutation introduced during reverse transcription and PCR in the RT-PCR protocol. It was concluded that the IMC 129 mutant is due to a single base transversion at nucleotide 316 in the coding region of the D gene of rapeseed microsomal delta 12-desaturase.
  • a single base transition from T to A at nucleotide 515 of the F gene was detected in Q508 compared to the Westar sequence.
  • the mutation changes the codon at this position from CTC to CAC, resulting in the non-conservative substitution of a non-polar residue, leucine, for a polar residue, histidine, in the resulting gene product.
  • No mutations were found in the F gene sequence of IMC 129 compared to the F gene sequence of Westar.
  • the mutation in the D gene of IMC 129 and Q508 mapped to a region having a conserved amino acid motif (His-Xaa-Xaa-Xaa-His) found in cloned delta-12 and delta-15 membrane bound-desaturases (Table 20).
  • the primers used to specifically amplify delta-12 desaturase F gene RNA from the indicated tissues were sense primer 5′-GGATATGATGATGGTGAAAGA-3′ (SEQ ID NO:19) and antisense primer 5′-TCTTTCACCATCATCATATCC-3′ (SEQ ID NO:20).
  • the primers used to specifically amplify delta-12 desaturase D gene RNA from the indicated tissues were sense primer 5′-GTTATGAAGCAAAGAAGAAAC-3′ (SEQ ID NO:21) and antisense primer 5′-GTTTCTTCTTTGCTTCATAAC-3′ (SEQ ID NO:22).
  • PCR primers Based on the single base change in the mutant D gene of IMC 129 described in above, two 5′ PCR primers were designed. The nucleotide sequence of the primers differed only in the base (G for Westar and A for IMC 129) at the 3′ end. The primers allow one to distinguish between mutant fad2-D and wild-type Fad2-D alleles in a DNA-based PCR assay. Since there is only a single base difference in the 5′ PCR primers, the PCR assay is very sensitive to the PCR conditions such as annealing temperature, cycle number, amount, and purity of DNA templates used. Assay conditions have been established that distinguish between the mutant gene and the wild type gene using genomic DNA from IMC 129 and wild type plants as templates.
  • Conditions may be further optimized by varying PCR parameters, particularly with variable crude DNA samples.
  • a PCR assay distinguishing the single base mutation in IMC 129 from the wild type gene along with fatty acid composition analysis provides a means to simplify segregation and selection analysis of genetic crosses involving plants having a delta-12 fatty acid desaturase mutation.
  • the first plasmid, pIMC110 was prepared by inserting into a disarmed Ti vector the full length wild type Fad3 gene in sense orientation (nucleotides 208 to 1336 of SEQ ID 6 in WO 93/11245), flanked by a napin promoter sequence positioned 5′ to the Fad3 gene and a napin termination sequence positioned 3′ to the Fad3 gene.
  • the rapeseed napin promoter is described in EP 0255378.
  • the second plasmid, pIMC205 was prepared by inserting a mutated Fad3 gene in sense orientation into a disarmed Ti vector.
  • the mutant sequence contained mutations at nucleotides 411 and 413 of the microsomal Fad3 gene described in W093/11245, thus changing the sequence for codon 96 from GAC to AAG.
  • the amino acid at codon 96 of the gene product was thereby changed from aspartic acid to lysine. See Table 20.
  • a bean (Phaseolus vulgaris) phaseolin (7S seed storage protein) promoter fragment of 495 base pairs was placed 5′ to the mutant Fad3 gene and a phaseolin termination sequence was placed 3′ to the mutant Fad3 gene.
  • phaseolin sequence is described in Doyle et al., (1986) J. Biol. Chem. 261:9228-9238) and Slightom et al., (1983) Proc. Natl. Acad. Sci. USA 80:1897-1901.
  • the appropriate plasmids were engineered and transferred separately to Agrobacterium strain LBA4404. Each engineered strain was used to infect 5 mm segments of hypocotyl explants from Westar seeds by cocultivation. Infected hypocotyls were transferred to callus medium and, subsequently, to regeneration medium. Once discernable stems formed from the callus, shoots were excised and transferred to elongation medium. The elongated shoots were cut, dipped in RootoneTM, rooted on an agar medium and transplanted to potting soil to obtain fertile T1 plants. T2 seeds were obtained by selfing the resulting T1 plants.
  • Lines 652-09 and 663-40 are representative of plants containing pIMC110 and exhibiting an overexpression and a co-suppression phenotype, respectively.
  • Line 205-284 is representative of plants containing pIMC205 and having the mutant fad3 gene.
  • PCR polymerase chain reaction
  • PCR amplifications were carried out in a total volume of 100 ⁇ l and contained 0.3 ⁇ g genomic DNA, 200 ⁇ M deoxyribonucleoside triphosphates, 3 mM MgSO 4 , 1-2 Units DNA polymerase and 1'Buffer (supplied by the DNA polymerase manufacturer). Cycle conditions were: 1 cycle for 1 min at 95° C., followed by 30 cycles of min at 94° C., 2 min at 55° C. and 3 m 73° C.
  • the Fad2-D gene was amplified once using Elongase® (Gibco-BRL).
  • PCR primers were: 5′-CAUCAUCAUCAUCTTCTTCGTAGGGTTCATCG-3′ (SEQ ID NO:23) and 5′-CUACUACUACUATCATAGAAGAGAAAGGTTCAG-3′ (SEQ ID NO:24) for the 5′ and 3′ ends of the gene, respectively.
  • the Fad2-F gene was independently amplified 4 times, twice with Elongase® and twice with Taq polymerase (Boehringer Mannheim).
  • the PCR primers used were: 5′CAUCAUCAUCAUCATGGGTGCACGTGGAAGAA-3′ (SEQ ID NO:25) and 5′CUACUACUACUATCTTTCACCATCATCATATCC-3′ (SEQ ID NO:26) for the 5′ and 3′ ends of the gene, respectively.
  • Amplified DNA products were resolved on an agarose gel, purified by JetSorb® and then annealed into pAMP1 (Gibco-BRL) via the (CAU) 4 and (CUA) 4 sequences at the ends of the primers, and transformed into E. coli DH5 ⁇ .
  • Fad2-D and Fad2-F inserts were sequenced on both strands with an ABI PRISM 310 automated sequencer (Perkin-Elmer) following the manufacturer's directions, using synthetic primers, AmpliTaq® DNA polymerase and dye terminator.
  • the Fad2-D gene was found to have an intron upstream of the ATG start codon.
  • the coding sequence of the gene contained a G to A mutation at nucleotide 316, derived from IMC 129 (FIG. 2 ).
  • the breeding procedure designed to produce novel fatty acid compositions in rapeseed is outlined in FIG. 4 .
  • crosses were made between a high erucic acid line and a high oleic acid line.
  • the high erucic acid line designated HECO1 (sold under the trade name Hero), contains about 45.5% erucic acid (Table 23).
  • the high oleic acid lines were designated 93GS66A-130 and 93GS34A-179 and were derived from 93GS. See, for example, Example 5 and Table 17. These lines contain about 84% oleic acid in their seed oil (Table 24).
  • F 1 96.801 and 96.804 plants were self-pollinated to produce F 2 seed.
  • 622 random single F 2 seeds were analyzed for their fatty acid composition.
  • Table 25 summarizes the average percent and standard deviation for total monounsaturated content, oleic acid, eicosenoic acid, erucic acid, total polyunsaturated and total saturated fatty acid content of these 622 seeds.
  • Table 26 describes characteristics of selected populations within the total population of seeds. For example, 151 seeds had a long chain monounsaturated fatty acid content greater than 82% (Table 26, column B). Within this population, the average oleic, eicosenoic and erucic acid content was about 48%, 16%, and 19%, respectively. Total polyunsaturated fatty acid content (C18:2, C18:3, and C20:2) was about 9% and total saturated fatty acid content was less than 7%.
  • V800655.334 was a single seed that had a long chain monounsaturated fatty acid content of approximately 84%.
  • the oleic acid, eicosenoic acid and erucic acid content was 33.48%, 17.14%, and 32.23%, respectively.
  • the total polyunsaturated fatty acid content was approximately 10%.
  • the linoleic, ⁇ -linolenic and erucic acid content was 3.54%, 6.01%, and 0.15%, respectively.
  • V800655.126 was a single seed that had a long chain monounsaturated fatty acid content of approximately 85% (42.67% oleic acid, 16.21% eicosenoic acid, and 25.37% erucic acid).
  • the total polyunsaturated fatty acid content was approximately 8% (4.87% linoleic acid, 3.05% ⁇ -linolenic acid, and 0.13% eicosadienoic acid).
  • V800654.9 was a single seed that had a long chain monounsaturated fatty acid content of 89% (51.53% oleic acid, 16.94% eicosenoic acid, and 19.24% erucic acid).
  • the total polyunsaturated fatty acid content was approximately 8% (4.87% linoleic acid, 3.05% ⁇ -linolenic acid, and 0.13% eicosadienoic acid).
  • Single seeds having a long chain monounsaturated fatty acid content of at least about 82% and an erucic acid content of at least about 15% were planted in a greenhouse, grown to maturity and self-pollinated. Seed (F 3 generation) from each plant were harvested. A bulk seed sample from each F 2 plant is analyzed for fatty acid composition.
  • the high oleic acid lines included 048X058 and Q4275X663-40.
  • the 048X058 line resulted from a cross of two separate transformed lines.
  • the 048X058 line contains a co-suppression event resulting from introduction of the 663-40 transgene described above, and a second co-suppression event resulting from a transgene that includes an oleosin promoter linked to an oleic desaturase gene.
  • the Q4275X663-40 line was derived from a cross of Q4275 (Example 5 and Table 17) by 663-40.
  • the 663-40 line contains a co-suppression event resulting from a transgene that includes a napin promotor linked to a linoleic desaturase gene. Plants of each line were grown in growth chambers under 16 hrs of light at 23/17° C. day/night temperature. Flowers were emasculated prior to opening and covered to prevent cross pollination. On the following day, stigmas of emasulated flowers were pollinated with the desired pollen donor. At pod maturity the F1 seed was harvested.
  • F1 seed generated from the crosses in Table 28 were advanced to F2 seed generation in the growth chamber. Ten seeds were individually planted for each cross. At flowering the plants were covered with bags to ensure self pollination. The F2 seeds were harvested at maturity.
  • the seeds were germinated on filter paper at room temperature in the dark. Eighteen to 24 hours after the start of germination, one cotyledon was removed from the seed for extraction of fatty acids. Fatty acid compositions were determined using gas chromatography. Selected F2 half seeds having a high erucic content are shown in Tables 29 and 30.

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