JP7651470B2 - 核酸を解析するための方法および組成物 - Google Patents
核酸を解析するための方法および組成物 Download PDFInfo
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- JP7651470B2 JP7651470B2 JP2021559245A JP2021559245A JP7651470B2 JP 7651470 B2 JP7651470 B2 JP 7651470B2 JP 2021559245 A JP2021559245 A JP 2021559245A JP 2021559245 A JP2021559245 A JP 2021559245A JP 7651470 B2 JP7651470 B2 JP 7651470B2
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
- C12N15/1034—Isolating an individual clone by screening libraries
- C12N15/1093—General methods of preparing gene libraries, not provided for in other subgroups
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
- C12N15/1034—Isolating an individual clone by screening libraries
- C12N15/1068—Template (nucleic acid) mediated chemical library synthesis, e.g. chemical and enzymatical DNA-templated organic molecule synthesis, libraries prepared by non ribosomal polypeptide synthesis [NRPS], DNA/RNA-polymerase mediated polypeptide synthesis
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6806—Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N2330/00—Production
- C12N2330/30—Production chemically synthesised
- C12N2330/31—Libraries, arrays
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- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Organic Chemistry (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Genetics & Genomics (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- Biotechnology (AREA)
- Analytical Chemistry (AREA)
- Physics & Mathematics (AREA)
- Biophysics (AREA)
- Biochemistry (AREA)
- Molecular Biology (AREA)
- General Health & Medical Sciences (AREA)
- Microbiology (AREA)
- Immunology (AREA)
- Biomedical Technology (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Bioinformatics & Computational Biology (AREA)
- Crystallography & Structural Chemistry (AREA)
- Plant Pathology (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Enzymes And Modification Thereof (AREA)
Priority Applications (1)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| JP2024189679A JP2025014018A (ja) | 2019-04-05 | 2024-10-29 | 核酸を解析するための方法および組成物 |
Applications Claiming Priority (7)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201962830211P | 2019-04-05 | 2019-04-05 | |
| US62/830,211 | 2019-04-05 | ||
| US201962861594P | 2019-06-14 | 2019-06-14 | |
| US62/861,594 | 2019-06-14 | ||
| US201962925132P | 2019-10-23 | 2019-10-23 | |
| US62/925,132 | 2019-10-23 | ||
| PCT/US2020/026421 WO2020206143A1 (en) | 2019-04-05 | 2020-04-02 | Methods and compositions for analyzing nucleic acid |
Related Child Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2024189679A Division JP2025014018A (ja) | 2019-04-05 | 2024-10-29 | 核酸を解析するための方法および組成物 |
Publications (4)
| Publication Number | Publication Date |
|---|---|
| JP2022528139A JP2022528139A (ja) | 2022-06-08 |
| JP2022528139A5 JP2022528139A5 (https=) | 2023-03-13 |
| JPWO2020206143A5 JPWO2020206143A5 (https=) | 2023-03-13 |
| JP7651470B2 true JP7651470B2 (ja) | 2025-03-26 |
Family
ID=70465467
Family Applications (2)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2021559245A Active JP7651470B2 (ja) | 2019-04-05 | 2020-04-02 | 核酸を解析するための方法および組成物 |
| JP2024189679A Pending JP2025014018A (ja) | 2019-04-05 | 2024-10-29 | 核酸を解析するための方法および組成物 |
Family Applications After (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2024189679A Pending JP2025014018A (ja) | 2019-04-05 | 2024-10-29 | 核酸を解析するための方法および組成物 |
Country Status (10)
| Country | Link |
|---|---|
| US (1) | US20220348906A1 (https=) |
| EP (2) | EP4538390A3 (https=) |
| JP (2) | JP7651470B2 (https=) |
| KR (1) | KR20210148304A (https=) |
| CN (1) | CN114174530A (https=) |
| AU (1) | AU2020253471A1 (https=) |
| CA (1) | CA3134831A1 (https=) |
| IL (1) | IL286945A (https=) |
| SG (1) | SG11202110468YA (https=) |
| WO (1) | WO2020206143A1 (https=) |
Families Citing this family (23)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| JP7537748B2 (ja) | 2018-06-06 | 2024-08-21 | ザ リージェンツ オブ ザ ユニバーシティ オブ カリフォルニア | 核酸ライブラリを生成する方法ならびにそれを実施するための組成物およびキット |
| EP3997242B1 (en) * | 2019-07-09 | 2026-04-08 | The Translational Genomics Research Institute | Methods of detecting disease and treatment response in cfdna |
| US20230014607A1 (en) | 2019-10-09 | 2023-01-19 | Claret Bioscience, Llc | Methods and compositions for analyzing nucleic acid |
| CN110669830B (zh) * | 2019-10-24 | 2023-05-23 | 裕策医疗器械江苏有限公司 | 一种低质量ffpe dna的处理方法、装置和存储介质 |
| CN121344163A (zh) * | 2020-01-16 | 2026-01-16 | Dnae诊断有限公司 | 用于分离靶多核苷酸的组合物、试剂盒和方法 |
| CA3186974A1 (en) * | 2020-06-24 | 2021-12-30 | Claret Bioscience, Llc | Methods and compositions for analyzing nucleic acid |
| WO2022020346A1 (en) | 2020-07-21 | 2022-01-27 | Claret Bioscience, Llc | Cancer detection, monitoring, and reporting from sequencing cell-free dna |
| US20240395358A1 (en) | 2020-10-08 | 2024-11-28 | Claret Bioscience, Llc | Methods and compositions for analyzing nucleic acid |
| TW202242130A (zh) * | 2020-12-29 | 2022-11-01 | 比利時商比利時意志有限公司 | 循環轉錄因子分析 |
| CA3214206A1 (en) * | 2021-03-31 | 2022-10-06 | Carla SANMARTIN | Nucleic acid library sequencing techniques with adapter dimer detection |
| CN115197998A (zh) * | 2021-04-13 | 2022-10-18 | 广东菲鹏生物有限公司 | 一种单链核酸分子测序文库构建方法 |
| GB2606158B (en) * | 2021-04-26 | 2023-12-27 | Wobble Genomics Ltd | Amplification of single stranded DNA |
| US20240344056A1 (en) * | 2021-06-04 | 2024-10-17 | Somagenics, Inc. | Improved method of sequencing library preparation for short dna |
| CN118401675A (zh) * | 2021-10-15 | 2024-07-26 | 凯杰科学有限责任公司 | 制备dna文库的方法及其用途 |
| WO2023158739A2 (en) * | 2022-02-17 | 2023-08-24 | Claret Bioscience, Llc | Methods and compositions for analyzing nucleic acid |
| US20260078439A1 (en) * | 2022-08-24 | 2026-03-19 | The Regents Of The University Of California | Next-Generation Sequencing Pipeline for Detection of Ultrashort Single-Stranded Cell-Free DNA |
| WO2024054517A1 (en) * | 2022-09-08 | 2024-03-14 | Claret Bioscience, Llc | Methods and compositions for analyzing nucleic acid |
| CN116426607A (zh) * | 2022-12-23 | 2023-07-14 | 南京诺唯赞生物科技股份有限公司 | 一种dna建库预混液 |
| CN119998463A (zh) * | 2023-03-20 | 2025-05-13 | 深圳华大智造科技股份有限公司 | 一种高效且快速进行核酸文库构建的方法 |
| WO2024254073A1 (en) * | 2023-06-07 | 2024-12-12 | Claret Bioscience, Llc | Methods and compositions for analyzing nucleic acid |
| WO2025049331A2 (en) | 2023-08-31 | 2025-03-06 | Illumina, Inc. | Aptamer detection techniques |
| WO2025072689A1 (en) * | 2023-09-28 | 2025-04-03 | The Regents Of The University Of California | Methods and compositions for producing sequencing libraries |
| WO2026058704A1 (ja) * | 2024-09-10 | 2026-03-19 | 国立大学法人 東京大学 | Dnaバーコード配列を含む一本鎖 dnaの合成方法(method for synthesizing single-stranded dna containing dna barcode sequences) |
Citations (3)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2014164466A1 (en) | 2013-03-12 | 2014-10-09 | E. I. Du Pont De Nemours And Company | Methods for the identification of variant recognition sites for rare-cutting engineered double-strand-break-inducing agents and compositions and uses thereof |
| JP2014528713A (ja) | 2011-09-07 | 2014-10-30 | エックス−ケム インコーポレイテッド | Dnaコードライブラリーをタグ付けするための方法 |
| JP2015521468A (ja) | 2012-06-18 | 2015-07-30 | ニューゲン テクノロジーズ, インコーポレイテッド | 望まれない核酸配列のネガティブ選択のための組成物および方法 |
Family Cites Families (22)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US6927028B2 (en) | 2001-08-31 | 2005-08-09 | Chinese University Of Hong Kong | Non-invasive methods for detecting non-host DNA in a host using epigenetic differences between the host and non-host DNA |
| EP1817430B1 (en) | 2004-11-29 | 2009-09-16 | Klinikum der Universität Regensburg | Means and methods for detecting methylated dna |
| EP3260556B1 (en) | 2006-05-31 | 2019-07-31 | Sequenom, Inc. | Methods for the extraction of nucleic acid from a sample |
| AU2007260750A1 (en) | 2006-06-16 | 2007-12-21 | Sequenom, Inc. | Methods and compositions for the amplification, detection and quantification of nucleic acid from a sample |
| WO2009032781A2 (en) | 2007-08-29 | 2009-03-12 | Sequenom, Inc. | Methods and compositions for universal size-specific polymerase chain reaction |
| WO2009032779A2 (en) | 2007-08-29 | 2009-03-12 | Sequenom, Inc. | Methods and compositions for the size-specific seperation of nucleic acid from a sample |
| WO2009120808A2 (en) | 2008-03-26 | 2009-10-01 | Sequenom, Inc. | Restriction endonuclease enhanced polymorphic sequence detection |
| US8476013B2 (en) | 2008-09-16 | 2013-07-02 | Sequenom, Inc. | Processes and compositions for methylation-based acid enrichment of fetal nucleic acid from a maternal sample useful for non-invasive prenatal diagnoses |
| EP3770255A1 (en) | 2008-09-16 | 2021-01-27 | Sequenom, Inc. | Processes and compositions for methylation-based enrichment of fetal nucleic acid from a maternal sample useful for non-invasive prenatal diagnoses |
| EP3514244B1 (en) | 2009-04-03 | 2021-07-07 | Sequenom, Inc. | Nucleic acid preparation methods |
| WO2011143659A2 (en) | 2010-05-14 | 2011-11-17 | Fluidigm Corporation | Nucleic acid isolation methods |
| US9139874B2 (en) | 2011-07-07 | 2015-09-22 | Life Technologies Corporation | Bi-directional sequencing compositions and methods |
| EP3299476B1 (en) | 2013-09-05 | 2023-07-19 | The Jackson Laboratory | Compositions for rna-chromatin interaction analysis and uses thereof |
| CN105441429A (zh) * | 2014-08-08 | 2016-03-30 | 深圳华大基因科技有限公司 | 一种制备腺苷酰化接头的方法及腺苷酰化接头 |
| US11014957B2 (en) * | 2015-12-21 | 2021-05-25 | Realseq Biosciences, Inc. | Methods of library construction for polynucleotide sequencing |
| US11299780B2 (en) * | 2016-07-15 | 2022-04-12 | The Regents Of The University Of California | Methods of producing nucleic acid libraries |
| JP7062681B2 (ja) * | 2017-03-20 | 2022-05-06 | イルミナ インコーポレイテッド | 核酸ライブラリを調製するための方法および組成物 |
| EP4134444B1 (en) * | 2017-03-23 | 2024-10-02 | University of Washington | Methods for targeted nucleic acid sequence enrichment with applications to error corrected nucleic acid sequencing |
| US11198865B2 (en) | 2017-11-02 | 2021-12-14 | Amanda Raine | Splinted ligation adapter tagging |
| WO2019222523A2 (en) | 2018-05-16 | 2019-11-21 | Bio-Rad Laboratories, Inc. | Methods for processing nucleic acid samples |
| JP7537748B2 (ja) * | 2018-06-06 | 2024-08-21 | ザ リージェンツ オブ ザ ユニバーシティ オブ カリフォルニア | 核酸ライブラリを生成する方法ならびにそれを実施するための組成物およびキット |
| AU2019282812B2 (en) | 2018-06-07 | 2025-08-14 | Arc Bio, Llc | Compositions and methods for making guide nucleic acids |
-
2020
- 2020-04-02 AU AU2020253471A patent/AU2020253471A1/en active Pending
- 2020-04-02 US US17/440,386 patent/US20220348906A1/en active Pending
- 2020-04-02 WO PCT/US2020/026421 patent/WO2020206143A1/en not_active Ceased
- 2020-04-02 JP JP2021559245A patent/JP7651470B2/ja active Active
- 2020-04-02 EP EP24219197.1A patent/EP4538390A3/en active Pending
- 2020-04-02 KR KR1020217036028A patent/KR20210148304A/ko active Pending
- 2020-04-02 SG SG11202110468YA patent/SG11202110468YA/en unknown
- 2020-04-02 CN CN202080039264.1A patent/CN114174530A/zh active Pending
- 2020-04-02 EP EP20722098.9A patent/EP3947723B1/en active Active
- 2020-04-02 CA CA3134831A patent/CA3134831A1/en active Pending
-
2021
- 2021-10-04 IL IL286945A patent/IL286945A/en unknown
-
2024
- 2024-10-29 JP JP2024189679A patent/JP2025014018A/ja active Pending
Patent Citations (3)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| JP2014528713A (ja) | 2011-09-07 | 2014-10-30 | エックス−ケム インコーポレイテッド | Dnaコードライブラリーをタグ付けするための方法 |
| JP2015521468A (ja) | 2012-06-18 | 2015-07-30 | ニューゲン テクノロジーズ, インコーポレイテッド | 望まれない核酸配列のネガティブ選択のための組成物および方法 |
| WO2014164466A1 (en) | 2013-03-12 | 2014-10-09 | E. I. Du Pont De Nemours And Company | Methods for the identification of variant recognition sites for rare-cutting engineered double-strand-break-inducing agents and compositions and uses thereof |
Non-Patent Citations (1)
| Title |
|---|
| Nucleic Acids Research,2017年,vol.45,no.6,e36,1-15 |
Also Published As
| Publication number | Publication date |
|---|---|
| JP2025014018A (ja) | 2025-01-28 |
| IL286945A (en) | 2021-12-01 |
| KR20210148304A (ko) | 2021-12-07 |
| AU2020253471A1 (en) | 2021-10-14 |
| SG11202110468YA (en) | 2021-10-28 |
| EP3947723C0 (en) | 2024-12-18 |
| CN114174530A (zh) | 2022-03-11 |
| WO2020206143A1 (en) | 2020-10-08 |
| EP3947723B1 (en) | 2024-12-18 |
| EP3947723A1 (en) | 2022-02-09 |
| WO2020206143A9 (en) | 2021-12-23 |
| EP4538390A2 (en) | 2025-04-16 |
| CA3134831A1 (en) | 2020-10-08 |
| EP4538390A3 (en) | 2025-07-09 |
| US20220348906A1 (en) | 2022-11-03 |
| JP2022528139A (ja) | 2022-06-08 |
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