JP6840120B2 - クエンチャー及びその用途 - Google Patents
クエンチャー及びその用途 Download PDFInfo
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- JP6840120B2 JP6840120B2 JP2018221616A JP2018221616A JP6840120B2 JP 6840120 B2 JP6840120 B2 JP 6840120B2 JP 2018221616 A JP2018221616 A JP 2018221616A JP 2018221616 A JP2018221616 A JP 2018221616A JP 6840120 B2 JP6840120 B2 JP 6840120B2
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- Prior art keywords
- substituted
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- nucleic acid
- quencher
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- -1 phospho Chemical class 0.000 claims description 70
- 239000000126 substance Substances 0.000 claims description 69
- 108020004707 nucleic acids Proteins 0.000 claims description 57
- 150000007523 nucleic acids Chemical class 0.000 claims description 57
- 102000039446 nucleic acids Human genes 0.000 claims description 57
- 239000000203 mixture Substances 0.000 claims description 35
- 108091034117 Oligonucleotide Proteins 0.000 claims description 29
- 125000000217 alkyl group Chemical group 0.000 claims description 19
- 150000001412 amines Chemical class 0.000 claims description 19
- 125000003178 carboxy group Chemical group [H]OC(*)=O 0.000 claims description 18
- 125000005842 heteroatom Chemical group 0.000 claims description 18
- 125000002887 hydroxy group Chemical group [H]O* 0.000 claims description 17
- 125000003396 thiol group Chemical class [H]S* 0.000 claims description 17
- 125000003118 aryl group Chemical group 0.000 claims description 15
- 238000001514 detection method Methods 0.000 claims description 14
- 150000001299 aldehydes Chemical class 0.000 claims description 13
- 125000001072 heteroaryl group Chemical group 0.000 claims description 13
- 238000006243 chemical reaction Methods 0.000 claims description 12
- 108090000790 Enzymes Proteins 0.000 claims description 11
- 102000004190 Enzymes Human genes 0.000 claims description 11
- 125000001188 haloalkyl group Chemical group 0.000 claims description 11
- 150000002576 ketones Chemical class 0.000 claims description 11
- 229910052760 oxygen Inorganic materials 0.000 claims description 11
- 229910052717 sulfur Inorganic materials 0.000 claims description 11
- 150000002118 epoxides Chemical class 0.000 claims description 10
- 125000004404 heteroalkyl group Chemical group 0.000 claims description 10
- 150000003461 sulfonyl halides Chemical class 0.000 claims description 8
- 150000001336 alkenes Chemical class 0.000 claims description 7
- 239000003153 chemical reaction reagent Substances 0.000 claims description 7
- 125000006575 electron-withdrawing group Chemical group 0.000 claims description 6
- 239000012038 nucleophile Substances 0.000 claims description 6
- BBEAQIROQSPTKN-UHFFFAOYSA-N pyrene Chemical compound C1=CC=C2C=CC3=CC=CC4=CC=C1C2=C43 BBEAQIROQSPTKN-UHFFFAOYSA-N 0.000 claims description 6
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- JLCPHMBAVCMARE-UHFFFAOYSA-N [3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methyl [5-(6-aminopurin-9-yl)-2-(hydroxymethyl)oxolan-3-yl] hydrogen phosphate Polymers Cc1cn(C2CC(OP(O)(=O)OCC3OC(CC3OP(O)(=O)OCC3OC(CC3O)n3cnc4c3nc(N)[nH]c4=O)n3cnc4c3nc(N)[nH]c4=O)C(COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3CO)n3cnc4c(N)ncnc34)n3ccc(N)nc3=O)n3cnc4c(N)ncnc34)n3ccc(N)nc3=O)n3ccc(N)nc3=O)n3ccc(N)nc3=O)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cc(C)c(=O)[nH]c3=O)n3cc(C)c(=O)[nH]c3=O)n3ccc(N)nc3=O)n3cc(C)c(=O)[nH]c3=O)n3cnc4c3nc(N)[nH]c4=O)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)O2)c(=O)[nH]c1=O JLCPHMBAVCMARE-UHFFFAOYSA-N 0.000 claims description 5
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- KRKNYBCHXYNGOX-UHFFFAOYSA-N citric acid Chemical compound OC(=O)CC(O)(C(O)=O)CC(O)=O KRKNYBCHXYNGOX-UHFFFAOYSA-N 0.000 claims 6
- QGKMIGUHVLGJBR-UHFFFAOYSA-M (4z)-1-(3-methylbutyl)-4-[[1-(3-methylbutyl)quinolin-1-ium-4-yl]methylidene]quinoline;iodide Chemical compound [I-].C12=CC=CC=C2N(CCC(C)C)C=CC1=CC1=CC=[N+](CCC(C)C)C2=CC=CC=C12 QGKMIGUHVLGJBR-UHFFFAOYSA-M 0.000 claims 1
- GOLORTLGFDVFDW-UHFFFAOYSA-N 3-(1h-benzimidazol-2-yl)-7-(diethylamino)chromen-2-one Chemical compound C1=CC=C2NC(C3=CC4=CC=C(C=C4OC3=O)N(CC)CC)=NC2=C1 GOLORTLGFDVFDW-UHFFFAOYSA-N 0.000 claims 1
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- 230000000171 quenching effect Effects 0.000 description 24
- WYURNTSHIVDZCO-UHFFFAOYSA-N Tetrahydrofuran Chemical compound C1CCOC1 WYURNTSHIVDZCO-UHFFFAOYSA-N 0.000 description 20
- 238000010791 quenching Methods 0.000 description 19
- YMWUJEATGCHHMB-UHFFFAOYSA-N Dichloromethane Chemical compound ClCCl YMWUJEATGCHHMB-UHFFFAOYSA-N 0.000 description 18
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- 238000003756 stirring Methods 0.000 description 14
- IJGRMHOSHXDMSA-UHFFFAOYSA-N Atomic nitrogen Chemical compound N#N IJGRMHOSHXDMSA-UHFFFAOYSA-N 0.000 description 12
- VEXZGXHMUGYJMC-UHFFFAOYSA-N Hydrochloric acid Chemical compound Cl VEXZGXHMUGYJMC-UHFFFAOYSA-N 0.000 description 12
- 150000002500 ions Chemical class 0.000 description 11
- JUJWROOIHBZHMG-UHFFFAOYSA-N Pyridine Chemical compound C1=CC=NC=C1 JUJWROOIHBZHMG-UHFFFAOYSA-N 0.000 description 10
- 229910052799 carbon Inorganic materials 0.000 description 10
- 238000000746 purification Methods 0.000 description 10
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- WEVYAHXRMPXWCK-UHFFFAOYSA-N Acetonitrile Chemical compound CC#N WEVYAHXRMPXWCK-UHFFFAOYSA-N 0.000 description 9
- OKTJSMMVPCPJKN-UHFFFAOYSA-N Carbon Chemical compound [C] OKTJSMMVPCPJKN-UHFFFAOYSA-N 0.000 description 9
- RTZKZFJDLAIYFH-UHFFFAOYSA-N Diethyl ether Chemical compound CCOCC RTZKZFJDLAIYFH-UHFFFAOYSA-N 0.000 description 9
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- NBIIXXVUZAFLBC-UHFFFAOYSA-K phosphate Chemical compound [O-]P([O-])([O-])=O NBIIXXVUZAFLBC-UHFFFAOYSA-K 0.000 description 7
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- VHYFNPMBLIVWCW-UHFFFAOYSA-N 4-Dimethylaminopyridine Chemical compound CN(C)C1=CC=NC=C1 VHYFNPMBLIVWCW-UHFFFAOYSA-N 0.000 description 6
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- 125000004386 diacrylate group Chemical group 0.000 description 1
- 238000003745 diagnosis Methods 0.000 description 1
- MHDVGSVTJDSBDK-UHFFFAOYSA-N dibenzyl ether Chemical compound C=1C=CC=CC=1COCC1=CC=CC=C1 MHDVGSVTJDSBDK-UHFFFAOYSA-N 0.000 description 1
- 235000014113 dietary fatty acids Nutrition 0.000 description 1
- 239000000539 dimer Substances 0.000 description 1
- 125000000118 dimethyl group Chemical group [H]C([H])([H])* 0.000 description 1
- 125000002147 dimethylamino group Chemical group [H]C([H])([H])N(*)C([H])([H])[H] 0.000 description 1
- SWSQBOPZIKWTGO-UHFFFAOYSA-N dimethylaminoamidine Natural products CN(C)C(N)=N SWSQBOPZIKWTGO-UHFFFAOYSA-N 0.000 description 1
- POLCUAVZOMRGSN-UHFFFAOYSA-N dipropyl ether Chemical compound CCCOCCC POLCUAVZOMRGSN-UHFFFAOYSA-N 0.000 description 1
- 150000002016 disaccharides Chemical class 0.000 description 1
- 229940079593 drug Drugs 0.000 description 1
- 239000003814 drug Substances 0.000 description 1
- 238000001035 drying Methods 0.000 description 1
- 238000001962 electrophoresis Methods 0.000 description 1
- 239000002158 endotoxin Substances 0.000 description 1
- YQGOJNYOYNNSMM-UHFFFAOYSA-N eosin Chemical compound [Na+].OC(=O)C1=CC=CC=C1C1=C2C=C(Br)C(=O)C(Br)=C2OC2=C(Br)C(O)=C(Br)C=C21 YQGOJNYOYNNSMM-UHFFFAOYSA-N 0.000 description 1
- 125000004185 ester group Chemical group 0.000 description 1
- 150000002170 ethers Chemical class 0.000 description 1
- 125000001495 ethyl group Chemical group [H]C([H])([H])C([H])([H])* 0.000 description 1
- 229930195729 fatty acid Natural products 0.000 description 1
- 239000000194 fatty acid Substances 0.000 description 1
- 150000004665 fatty acids Chemical class 0.000 description 1
- 125000001153 fluoro group Chemical group F* 0.000 description 1
- 125000000524 functional group Chemical group 0.000 description 1
- 125000002541 furyl group Chemical group 0.000 description 1
- 239000000499 gel Substances 0.000 description 1
- 239000008273 gelatin Substances 0.000 description 1
- 229920000159 gelatin Polymers 0.000 description 1
- 235000019322 gelatine Nutrition 0.000 description 1
- 235000011852 gelatine desserts Nutrition 0.000 description 1
- 150000004676 glycans Chemical class 0.000 description 1
- 125000004970 halomethyl group Chemical group 0.000 description 1
- JHGVLAHJJNKSAW-UHFFFAOYSA-N herniarin Natural products C1CC(=O)OC2=CC(OC)=CC=C21 JHGVLAHJJNKSAW-UHFFFAOYSA-N 0.000 description 1
- 239000005556 hormone Substances 0.000 description 1
- 229940088597 hormone Drugs 0.000 description 1
- 229920002674 hyaluronan Polymers 0.000 description 1
- 229960003160 hyaluronic acid Drugs 0.000 description 1
- 229930195733 hydrocarbon Natural products 0.000 description 1
- 125000004435 hydrogen atom Chemical group [H]* 0.000 description 1
- 125000001841 imino group Chemical group [H]N=* 0.000 description 1
- 125000003453 indazolyl group Chemical group N1N=C(C2=C1C=CC=C2)* 0.000 description 1
- MOFVSTNWEDAEEK-UHFFFAOYSA-M indocyanine green Chemical compound [Na+].[O-]S(=O)(=O)CCCCN1C2=CC=C3C=CC=CC3=C2C(C)(C)C1=CC=CC=CC=CC1=[N+](CCCCS([O-])(=O)=O)C2=CC=C(C=CC=C3)C3=C2C1(C)C MOFVSTNWEDAEEK-UHFFFAOYSA-M 0.000 description 1
- 229960004657 indocyanine green Drugs 0.000 description 1
- 125000003387 indolinyl group Chemical group N1(CCC2=CC=CC=C12)* 0.000 description 1
- 229910001412 inorganic anion Inorganic materials 0.000 description 1
- 229910052740 iodine Inorganic materials 0.000 description 1
- 239000011630 iodine Substances 0.000 description 1
- 125000000959 isobutyl group Chemical group [H]C([H])([H])C([H])(C([H])([H])[H])C([H])([H])* 0.000 description 1
- 125000001972 isopentyl group Chemical group [H]C([H])([H])C([H])(C([H])([H])[H])C([H])([H])C([H])([H])* 0.000 description 1
- 125000001449 isopropyl group Chemical group [H]C([H])([H])C([H])(*)C([H])([H])[H] 0.000 description 1
- 125000002183 isoquinolinyl group Chemical group C1(=NC=CC2=CC=CC=C12)* 0.000 description 1
- 150000002540 isothiocyanates Chemical class 0.000 description 1
- 125000000842 isoxazolyl group Chemical group 0.000 description 1
- ZLVXBBHTMQJRSX-VMGNSXQWSA-N jdtic Chemical compound C1([C@]2(C)CCN(C[C@@H]2C)C[C@H](C(C)C)NC(=O)[C@@H]2NCC3=CC(O)=CC=C3C2)=CC=CC(O)=C1 ZLVXBBHTMQJRSX-VMGNSXQWSA-N 0.000 description 1
- 239000003446 ligand Substances 0.000 description 1
- 229920006008 lipopolysaccharide Polymers 0.000 description 1
- WGOPGODQLGJZGL-UHFFFAOYSA-N lithium;butane Chemical compound [Li+].CC[CH-]C WGOPGODQLGJZGL-UHFFFAOYSA-N 0.000 description 1
- 230000007774 longterm Effects 0.000 description 1
- 239000000463 material Substances 0.000 description 1
- 238000005259 measurement Methods 0.000 description 1
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- 239000012528 membrane Substances 0.000 description 1
- 229910021645 metal ion Inorganic materials 0.000 description 1
- CXHHBNMLPJOKQD-UHFFFAOYSA-N methyl hydrogen carbonate Chemical compound COC(O)=O CXHHBNMLPJOKQD-UHFFFAOYSA-N 0.000 description 1
- CXKWCBBOMKCUKX-UHFFFAOYSA-M methylene blue Chemical compound [Cl-].C1=CC(N(C)C)=CC2=[S+]C3=CC(N(C)C)=CC=C3N=C21 CXKWCBBOMKCUKX-UHFFFAOYSA-M 0.000 description 1
- 229960000907 methylthioninium chloride Drugs 0.000 description 1
- ZLQJVGSVJRBUNL-UHFFFAOYSA-N methylumbelliferone Natural products C1=C(O)C=C2OC(=O)C(C)=CC2=C1 ZLQJVGSVJRBUNL-UHFFFAOYSA-N 0.000 description 1
- 244000005700 microbiome Species 0.000 description 1
- 239000004005 microsphere Substances 0.000 description 1
- 150000002772 monosaccharides Chemical class 0.000 description 1
- 125000004572 morpholin-3-yl group Chemical group N1C(COCC1)* 0.000 description 1
- 125000004573 morpholin-4-yl group Chemical group N1(CCOCC1)* 0.000 description 1
- 125000002757 morpholinyl group Chemical group 0.000 description 1
- 230000035772 mutation Effects 0.000 description 1
- 125000004108 n-butyl group Chemical group [H]C([H])([H])C([H])([H])C([H])([H])C([H])([H])* 0.000 description 1
- 125000003136 n-heptyl group Chemical group [H]C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])* 0.000 description 1
- 125000001280 n-hexyl group Chemical group C(CCCCC)* 0.000 description 1
- 125000000740 n-pentyl group Chemical group [H]C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])* 0.000 description 1
- 125000004123 n-propyl group Chemical group [H]C([H])([H])C([H])([H])C([H])([H])* 0.000 description 1
- 235000001968 nicotinic acid Nutrition 0.000 description 1
- 239000011664 nicotinic acid Substances 0.000 description 1
- 230000000269 nucleophilic effect Effects 0.000 description 1
- 238000002515 oligonucleotide synthesis Methods 0.000 description 1
- 238000012634 optical imaging Methods 0.000 description 1
- 150000002891 organic anions Chemical class 0.000 description 1
- 239000001301 oxygen Substances 0.000 description 1
- 229930184652 p-Terphenyl Natural products 0.000 description 1
- JOXIMZWYDAKGHI-UHFFFAOYSA-N p-toluenesulfonic acid Substances CC1=CC=C(S(O)(=O)=O)C=C1 JOXIMZWYDAKGHI-UHFFFAOYSA-N 0.000 description 1
- AFAIELJLZYUNPW-UHFFFAOYSA-N pararosaniline free base Chemical compound C1=CC(N)=CC=C1C(C=1C=CC(N)=CC=1)=C1C=CC(=N)C=C1 AFAIELJLZYUNPW-UHFFFAOYSA-N 0.000 description 1
- QPCDCPDFJACHGM-UHFFFAOYSA-K pentetate(3-) Chemical compound OC(=O)CN(CC([O-])=O)CCN(CC([O-])=O)CCN(CC(O)=O)CC([O-])=O QPCDCPDFJACHGM-UHFFFAOYSA-K 0.000 description 1
- VLTRZXGMWDSKGL-UHFFFAOYSA-M perchlorate Chemical compound [O-]Cl(=O)(=O)=O VLTRZXGMWDSKGL-UHFFFAOYSA-M 0.000 description 1
- KHIWWQKSHDUIBK-UHFFFAOYSA-M periodate Chemical compound [O-]I(=O)(=O)=O KHIWWQKSHDUIBK-UHFFFAOYSA-M 0.000 description 1
- 125000001644 phenoxazinyl group Chemical group C1(=CC=CC=2OC3=CC=CC=C3NC12)* 0.000 description 1
- NMHMNPHRMNGLLB-UHFFFAOYSA-N phloretic acid Chemical compound OC(=O)CCC1=CC=C(O)C=C1 NMHMNPHRMNGLLB-UHFFFAOYSA-N 0.000 description 1
- GVKCHTBDSMQENH-UHFFFAOYSA-L phloxine B Chemical compound [Na+].[Na+].[O-]C(=O)C1=C(Cl)C(Cl)=C(Cl)C(Cl)=C1C1=C2C=C(Br)C(=O)C(Br)=C2OC2=C(Br)C([O-])=C(Br)C=C21 GVKCHTBDSMQENH-UHFFFAOYSA-L 0.000 description 1
- 239000008055 phosphate buffer solution Substances 0.000 description 1
- LFGREXWGYUGZLY-UHFFFAOYSA-N phosphoryl Chemical group [P]=O LFGREXWGYUGZLY-UHFFFAOYSA-N 0.000 description 1
- 125000004592 phthalazinyl group Chemical group C1(=NN=CC2=CC=CC=C12)* 0.000 description 1
- 125000000587 piperidin-1-yl group Chemical group [H]C1([H])N(*)C([H])([H])C([H])([H])C([H])([H])C1([H])[H] 0.000 description 1
- 125000004483 piperidin-3-yl group Chemical group N1CC(CCC1)* 0.000 description 1
- 125000003386 piperidinyl group Chemical group 0.000 description 1
- 229920000747 poly(lactic acid) Polymers 0.000 description 1
- 229920002338 polyhydroxyethylmethacrylate Polymers 0.000 description 1
- 239000004626 polylactic acid Substances 0.000 description 1
- 229920000656 polylysine Polymers 0.000 description 1
- 229920001282 polysaccharide Polymers 0.000 description 1
- 239000005017 polysaccharide Substances 0.000 description 1
- 229920002451 polyvinyl alcohol Polymers 0.000 description 1
- 229910052700 potassium Inorganic materials 0.000 description 1
- 239000011591 potassium Substances 0.000 description 1
- ROSDSFDQCJNGOL-UHFFFAOYSA-N protonated dimethyl amine Natural products CNC ROSDSFDQCJNGOL-UHFFFAOYSA-N 0.000 description 1
- 125000003373 pyrazinyl group Chemical group 0.000 description 1
- AJMSJNPWXJCWOK-UHFFFAOYSA-N pyren-1-yl butanoate Chemical compound C1=C2C(OC(=O)CCC)=CC=C(C=C3)C2=C2C3=CC=CC2=C1 AJMSJNPWXJCWOK-UHFFFAOYSA-N 0.000 description 1
- 125000000719 pyrrolidinyl group Chemical group 0.000 description 1
- 125000000168 pyrrolyl group Chemical group 0.000 description 1
- 239000002096 quantum dot Substances 0.000 description 1
- 150000003242 quaternary ammonium salts Chemical class 0.000 description 1
- 125000002294 quinazolinyl group Chemical group N1=C(N=CC2=CC=CC=C12)* 0.000 description 1
- 125000002943 quinolinyl group Chemical group N1=C(C=CC2=CC=CC=C12)* 0.000 description 1
- 125000001567 quinoxalinyl group Chemical group N1=C(C=NC2=CC=CC=C12)* 0.000 description 1
- 230000027756 respiratory electron transport chain Effects 0.000 description 1
- 235000019192 riboflavin Nutrition 0.000 description 1
- 239000002151 riboflavin Substances 0.000 description 1
- 229960002477 riboflavin Drugs 0.000 description 1
- 238000007363 ring formation reaction Methods 0.000 description 1
- 150000003839 salts Chemical class 0.000 description 1
- 125000002914 sec-butyl group Chemical group [H]C([H])([H])C([H])([H])C([H])(*)C([H])([H])[H] 0.000 description 1
- 125000003548 sec-pentyl group Chemical group [H]C([H])([H])C([H])([H])C([H])([H])C([H])(*)C([H])([H])[H] 0.000 description 1
- 230000001568 sexual effect Effects 0.000 description 1
- 229910052708 sodium Inorganic materials 0.000 description 1
- 239000011734 sodium Substances 0.000 description 1
- 239000000243 solution Substances 0.000 description 1
- 238000003860 storage Methods 0.000 description 1
- 229940014800 succinic anhydride Drugs 0.000 description 1
- 150000008163 sugars Chemical class 0.000 description 1
- IIACRCGMVDHOTQ-UHFFFAOYSA-N sulfamic acid Chemical compound NS(O)(=O)=O IIACRCGMVDHOTQ-UHFFFAOYSA-N 0.000 description 1
- 150000003871 sulfonates Chemical class 0.000 description 1
- 150000003460 sulfonic acids Chemical class 0.000 description 1
- 239000011593 sulfur Substances 0.000 description 1
- 230000002194 synthesizing effect Effects 0.000 description 1
- 125000000999 tert-butyl group Chemical group [H]C([H])([H])C(*)(C([H])([H])[H])C([H])([H])[H] 0.000 description 1
- BCNZYOJHNLTNEZ-UHFFFAOYSA-N tert-butyldimethylsilyl chloride Chemical compound CC(C)(C)[Si](C)(C)Cl BCNZYOJHNLTNEZ-UHFFFAOYSA-N 0.000 description 1
- 125000004192 tetrahydrofuran-2-yl group Chemical group [H]C1([H])OC([H])(*)C([H])([H])C1([H])[H] 0.000 description 1
- 125000003718 tetrahydrofuranyl group Chemical group 0.000 description 1
- 125000005958 tetrahydrothienyl group Chemical group 0.000 description 1
- 125000001544 thienyl group Chemical group 0.000 description 1
- 150000007970 thio esters Chemical class 0.000 description 1
- 125000004568 thiomorpholinyl group Chemical group 0.000 description 1
- 239000003053 toxin Substances 0.000 description 1
- 231100000765 toxin Toxicity 0.000 description 1
- 108700012359 toxins Proteins 0.000 description 1
- 125000004665 trialkylsilyl group Chemical group 0.000 description 1
- 125000004306 triazinyl group Chemical group 0.000 description 1
- LENZDBCJOHFCAS-UHFFFAOYSA-N tris Chemical compound OCC(N)(CO)CO LENZDBCJOHFCAS-UHFFFAOYSA-N 0.000 description 1
- 238000002211 ultraviolet spectrum Methods 0.000 description 1
- 108700026220 vif Genes Proteins 0.000 description 1
- 229920002554 vinyl polymer Polymers 0.000 description 1
- 229920003169 water-soluble polymer Polymers 0.000 description 1
Classifications
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- C—CHEMISTRY; METALLURGY
- C09—DYES; PAINTS; POLISHES; NATURAL RESINS; ADHESIVES; COMPOSITIONS NOT OTHERWISE PROVIDED FOR; APPLICATIONS OF MATERIALS NOT OTHERWISE PROVIDED FOR
- C09B—ORGANIC DYES OR CLOSELY-RELATED COMPOUNDS FOR PRODUCING DYES, e.g. PIGMENTS; MORDANTS; LAKES
- C09B11/00—Diaryl- or thriarylmethane dyes
- C09B11/28—Pyronines ; Xanthon, thioxanthon, selenoxanthan, telluroxanthon dyes
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D513/00—Heterocyclic compounds containing in the condensed system at least one hetero ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for in groups C07D463/00, C07D477/00 or C07D499/00 - C07D507/00
- C07D513/02—Heterocyclic compounds containing in the condensed system at least one hetero ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for in groups C07D463/00, C07D477/00 or C07D499/00 - C07D507/00 in which the condensed system contains two hetero rings
- C07D513/06—Peri-condensed systems
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- C09B11/00—Diaryl- or thriarylmethane dyes
- C09B11/04—Diaryl- or thriarylmethane dyes derived from triarylmethanes, i.e. central C-atom is substituted by amino, cyano, alkyl
- C09B11/06—Hydroxy derivatives of triarylmethanes in which at least one OH group is bound to an aryl nucleus and their ethers or esters
- C09B11/08—Phthaleins; Phenolphthaleins; Fluorescein
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- C—CHEMISTRY; METALLURGY
- C09—DYES; PAINTS; POLISHES; NATURAL RESINS; ADHESIVES; COMPOSITIONS NOT OTHERWISE PROVIDED FOR; APPLICATIONS OF MATERIALS NOT OTHERWISE PROVIDED FOR
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- C09B11/00—Diaryl- or thriarylmethane dyes
- C09B11/04—Diaryl- or thriarylmethane dyes derived from triarylmethanes, i.e. central C-atom is substituted by amino, cyano, alkyl
- C09B11/10—Amino derivatives of triarylmethanes
- C09B11/24—Phthaleins containing amino groups ; Phthalanes; Fluoranes; Phthalides; Rhodamine dyes; Phthaleins having heterocyclic aryl rings; Lactone or lactame forms of triarylmethane dyes
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- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6816—Hybridisation assays characterised by the detection means
- C12Q1/6818—Hybridisation assays characterised by the detection means involving interaction of two or more labels, e.g. resonant energy transfer
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- C12Q2563/00—Nucleic acid detection characterized by the use of physical, structural and functional properties
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- C12Q2565/00—Nucleic acid analysis characterised by mode or means of detection
- C12Q2565/10—Detection mode being characterised by the assay principle
- C12Q2565/101—Interaction between at least two labels
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- Investigating Or Analysing Materials By The Use Of Chemical Reactions (AREA)
Description
本研究は、大韓民国通商産業資源部による「高度技術センター(ATC)プログラム(10076988、分子診断のための蛍光体とその応用技術の開発)」からの助成金の支援を受けたものである。
本発明の一側面によれば、下記の化1又は化2で表されるクエンチャーが提供される。
本発明の他の側面によれば、化1、化2、化5及び化6で表されるクエンチャーから選択される少なくとも1つを含むオリゴヌクレオチドが提供される。
本発明の一実施例によれば、標的核酸にクエンチャーで標識されたプローブを反応させて標識する方法を具現することができる。また、標的生体分子の種類によってクエンチャーに適宜な反応性基を導入することで、標的−特異的相互作用を利用した生体分子の標識方法を具現することもできる。また、クエンチャーで標識した生体分子を電気泳動によって同定する方法を具現することもできる。
DNAマイクロアレイ法は、標識すべきである標的核酸に染料を反応させて標識する一方、標的核酸に対して相補的塩基序列を有する単一鎖のプローブ核酸を準備し、単一鎖に変性させた標的核酸とプローブ核酸を基板上で混成化して、標的核酸の蛍光を測定する。
250mLの1口反応器にStarting material(10g、20.31mmol)、Amine(32.5g、101.56mmol)、ジメチルスルホキシド(100mL)を入れて60℃で48時間撹拌する。冷却後、反応器に水(100mL)を入れて強撹拌した後、酢酸エチル(100mL×2)で抽出する。有機層に無水硫酸マグネシウムを入れて5分間撹拌した後、固体をろ過する。余液は、濃縮してカラム精製する。(1.8g、3.309mmol、11%)
100mLの1口反応器にintermediate1(1.8g、3.309mmol)、イミダゾール(0.68g、9.929mmol)、tert−ブチル−di−メチルクロロシラン(0.75g、4.964mmol)、ジメチルホルムアマイド(20mL)を入れて、常温で1時間撹拌する。反応器に酢酸エチル(80mL)を入れて塩水(200mL×2)で洗う。有機層に無水硫酸マグネシウムを入れて5分間撹拌した後、固体をろ過する。余液は、濃縮してカラム精製する。(1.37g、2.081mmol、63%)
250mLの3口反応器にReagent(1.2g、4.163mmol)、テトラヒドロフラン(15mL)を入れて、窒素気流下において−78℃で5分間撹拌する。反応器に1.6Mのn−ブチリチウム(2mL、3.121mmol)を徐々に滴下した後、−78℃で1時間撹拌する。intermediate2(1.37g、2.081mmol)をテトラヒドロフラン(15mL)に溶かして反応器に滴下した後、常温で12時間撹拌する。反応器に2Mの塩酸(10mL)を入れて30分間強撹拌する。濃縮後、カラム精製する。(0.76g、1.5mmol、72%)
250mLの1口反応器にintermediate3(190mg、0.375mmol)、4,4’−Dimethoxytrityl Chloride(130mg、0.375mmol)、4−(Dimethylamino)pyridine(45mg、0.375mmol)、ジメチルホルムアミド(2mL)を入れて常温で12時間撹拌する。濃縮後、カラム精製する。(20mg、0.0247mmol、7%)1H−NMR(300MHz、CDCl3)δ7.36−7.33(m、2H)、7.26−7.11(m、10H)、6.72(d、4H、J=8.7Hz)、4.65−6.62(m、3H)、6.48−6.40(m、2H)、3.99−3.97(m、2H)、3.90−3.49(m、14H)、3.22(m、3H)、3.09(m、3H)
250mLの1口反応器にStarting material(10g、20.31mmol)、Amine(32.5g、101.56mmol)、ジメチルスルホキシド(100mL)を入れて60℃で48時間撹拌する。冷却後、反応器に水(100mL)を入れて強撹拌した後、酢酸エチル(100mL×2)で抽出する。有機層に無水硫酸マグネシウムを入れて5分間撹拌した後、固体をろ過する。余液は、濃縮してカラム精製する。(10.11g、14.9mmol、73%)
250mLの1口反応器にintermediate1(8.2g、14.9mmol)、Amine(10mL、149mmol)、ジメチルスルホキシド(80mL)を入れて0℃で1時間撹拌する。冷却後、反応器に水(100mL)を入れて強撹拌した後、酢酸エチル(100mL×2)で抽出する。有機層に無水硫酸マグネシウムを入れて5分間撹拌した後、固体をろ過する。余液は、濃縮してカラム精製する。(5.17g、8.46mmol、57%)
250mLの3口反応器にReagent(8.78g、30.46mmol)、テトラヒドロフラン(90mL)を入れて窒素気流下において−78℃で5分間撹拌する。反応器に1.6Mのn−ブチリチウム(15.8mL、25.38mmol)を徐々に滴下した後、−78℃で1時間撹拌する。intermediate2(5.17g、8.46mmol)をテトラヒドロフラン(20mL)に溶かして反応器に滴下した後、常温で12時間撹拌する。反応器に2Mの塩酸(20mL)を入れて30分間強撹拌する。濃縮後、カラム精製する。(4.5g、7.37mmol、87%)
250mLの1口反応器にintermediate3(1.8g、2.949mmol)、4,4’−Dimethoxytrityl Chloride(1g、2.949mmol)、4−(Dimethylamino)pyridine(0.36g、2.949mmol)、Pyridine(20mL)を入れて常温で12時間撹拌する。濃縮後、カラム精製する。(1.8g、1.972mmol、67%)1H−NMR(300MHz、CDCl3)δ7.60(m、2H)、7.54−7.51(m、2H)、7.41−7.14(m、9H)、6.97−6.86(m、4H)、6.76(d、4H、8.4Hz)、4.96(bs、1H)、3.91−3.60(m、20H)、3.46(m、2H)、3.16−3.12(m、4H)、1.77(m、6H)
250mLの1口反応器にStarting material(10g、20.31mmol)、Amine(10mL、101.56mmol)、ジメチルスルホキシド(100mL)を入れて常温で2時間撹拌する。冷却後、反応器に水(100mL)を入れて強撹拌した後、ジクロロメタン(100mL×2)で抽出する。有機層に無水硫酸マグネシウムを入れて5分間撹拌した後、固体をろ過する。余液は、濃縮してカラム精製する。(5.82g、13.62mmol、67%)
250mLの1口反応器にintermeidate1(2.3g、5.381mmol)、Amine(5g、26.9mmol)、ジメチルスルホキシド(20mL)を入れて90℃で6時間撹拌する。冷却後、反応器に水(300mL)を入れて強撹拌した後、酢酸エチル(100mL×2)で抽出する。有機層に無水硫酸マグネシウムを入れて5分間撹拌した後、固体をろ過する。余液は、濃縮して再結晶する。(2.08g、4.486mmol、83%)
250mLの3口反応器にReagent1(6.5g、22.52mmol)、テトラヒドロフラン(70mL)を入れて窒素気流下において−78℃で5分間撹拌する。反応器に1.6Mのn−ブチリチウム(11.73mL、18.77mmol)を徐々に滴下した後、−78℃で1時間撹拌する。intermediate2(2.9g、6.26mmol)をテトラヒドロフラン(20mL)に溶かして反応器に滴下した後、常温で12時間撹拌する。反応器に2Mの塩酸(20mL)を入れて30分間強撹拌する。濃縮後、精製なしに次の反応を行う。
250mLの1口反応器にintermediate3(2.8g)、Reagent2(0.82g、4.46mmol)、O−(Benzotriazol−1yl)−N,N,N’,N’−tetramethyluronium Tetrafluoroborate(1.72g、5.35mmol)、トリエチルアミン(1.9mL、13.38mmol)、ジメチルホルムアマイド(30mL)を入れて常温で3時間撹拌する。濃縮してカラム精製する。ジクロロメタン(10mL)、4Mの塩酸(4mL)を入れて常温で2時間撹拌する。濃縮してカラム精製する。(130mg、0.191mmol)
50mLの1口反応器にintermediate4(130mg、0.191mmol)、4,4’−Dimethoxytrityl Chloride(100mg、0.287mmol)、4−(Dimethylamino)pyridine(23mg、0.191mmol)、Pyridine(1mL)を入れて常温で72時間撹拌する。濃縮後、カラム精製する。(65mg、0.0662mmol、35%)1H−NMR(300MHz、CDCl3)δ7.64−7.59(m、2H)、7.41(d、2H、8.4Hz)、7.31−7.01(m、11H)、6.88(s、2H)、6.82−6.78(m、4H)、4.63−6.61(m、1H)、4.21−4.18(m、1H)、4.05−3.24(m、23H)、3.16−3.13(m、4H)、1.80−1.74(m、6H)
250mLの1口反応器にStarting material(2g、4.062mmol)、Amine(9.32g、40.62mmol)、ジメチルスルホキシド(20mL)を入れて60℃で12時間撹拌する。冷却後、反応器に水(100mL)を入れて強撹拌した後、酢酸エチル(100mL×2)で抽出する。有機層に無水硫酸マグネシウムを入れて5分間撹拌した後、固体をろ過する。余液は、濃縮してカラム精製する。(0.8g、1.228mmol、30%)
100mLの3口反応器にReagent(0.93g、3.225mmol)、テトラヒドロフラン(10mL)を入れて窒素気流下において−78℃で5分間撹拌する。反応器に1.6Mのn−ブチルリチウム(3mL、4.838mmol)を徐々に滴下した後、−78℃で1時間撹拌する。intermediate1(0.7g、1.075mmol)をテトラヒドロフラン(10mL)に溶かして反応器に滴下した後、常温で12時間撹拌する。反応器に2Mの塩酸(10mL)を入れて30分間強撹拌する。濃縮後、カラム精製する。(0.28g、0.430mmol、40%)
50mLの1口反応器にintermeidate2(280mg、0.430mmol)、4,4’−Dimethoxytrityl Chloride(145mg、0.430mmol)、Pyridine(5mL)を入れて常温で48時間撹拌する。濃縮後、カラム精製する。(37mg、0.0388mmol、9%)1H−NMR(300MHz、CDCl3)δ7.58−7.53(m、2H)、7.43−7.40(m、2H)、7.31−7.20(m、7H)、7.07−7.04(m、2H)、6.89−6.81(m、8H)、4.23−4.18(m、4)、3.78(m、10H)、3.57(m、2H)、3.34−3.22(m、4H)、3.16−3.13(m、4H)、3.00−2.98(m、2H)、2.05−2.02(m、6H)、1.47−1.34(m、4H)
100mLの1口反応器にStarting material2(2g、3.858mmol)、Amine(6.43g、19.29mmol)、ジメチルスルホキシド(20mL)を入れて60℃で48時間撹拌する。冷却後、反応器に水(100mL)を入れて強撹拌した後、酢酸エチル(100mL×2)で抽出する。有機層に無水硫酸マグネシウムを入れて5分間撹拌した後、固体をろ過する。余液は、濃縮してカラム精製する。(0.87g、1.239mmol、32%)
50mLの1口反応器にintermediate1(0.87g、1.239mmol)、Amine(1.2mL、12.39mmol)、ジメチルスルホキシド(10mL)を入れて90℃で2時間撹拌する。冷却後、反応器に水(100mL)を入れて強撹拌した後、酢酸エチル(100mL×2)で抽出する。有機層に無水硫酸マグネシウムを入れて5分間撹拌した後、固体をろ過する。余液は、濃縮してカラム精製する。(500mg、0.785mmol、63%)
50mLの3口反応器にReagent(0.68g、2.354mmol)、テトラヒドロフラン(5mL)を入れて窒素気流下において−78℃で5分間撹拌する。反応器に1.4Mのsec−ブチルリチウム(1.7mL、2.354mmol)を徐々に滴下した後、−78℃で1時間撹拌する。intermediate2(500mg、0.785mmol)をテトラヒドロフラン(5mL)に溶かして反応器に滴下した後、常温で12時間撹拌する。反応器に2Mの塩酸(3mL)を入れて30分間強撹拌する。濃縮後、カラム精製する。(380mg、0.597mmol、76%)
100mLの1口反応器にintermediate3(380mg、0.97mmol)、4,4’−Dimethoxytrityl Chloride(200mg、0.597mmol)、4−(Dimethylamino)pyridine(73mg、0.597mmol)、Pyridine(5mL)を入れて常温で12時間撹拌する。濃縮後、カラム精製する。
化合物7を利用して10−Column Polygen DNA Synthesizerを用いてOligonucleotideを合成した。合成されたオリゴヌクレオチドのUVスペクトラムは、図1に示した。
実験例1
製造例1〜5によって製造された化合物4、化合物7、化合物12、化合物18、化合物20のλMax(nm)、Absorption coefficient(e)を確認した。その結果は、図2及び表2で表した。
下記の表3のように、二重標識プローブを設計した後、それぞれの二重標識プローブに対する消光特性を測定した。
Claims (16)
- 下記の化1又は化2で表されるクエンチャー:
Qは、下記の化3又は化4で表され、
m及びnは、それぞれ独立して0〜3の定数で、
Xは、O、S、CR7R8又はSiR7R8で、
Yは、O又はSで、
R7及びR8は、それぞれ独立して置換または非置換されたC1−C40アルキル、少なくとも1つのヘテロ原子を含む置換または非置換されたC1−C40ヘテロアルキル、置換または非置換されたアリール及び置換または非置換されたヘテロアリールから選択されるか、互いに結合して環を形成し、
R1、R2、R3及びR4のうち少なくとも1つは、カルボキシル、カルボキシル誘導体、ヒドロキシル、ハロアルキル、求核体、アルデヒド、ケトン、ハロゲン化スルホニル、チオール、アミン、スルフヒドリル、アルケン、エポキシド及びホスホロアミダイトから選択される作用基であるか、前記作用基と共有結合可能な反応性基である。 - 下記の化5又は化6で表されるクエンチャー:
Qは、下記の化3又は化4で表され、
m及びnは、それぞれ独立して0〜3の定数で、
Xは、O、S、CR7R8又はSiR7R8で、
Yは、O又はSで、
R7及びR8は、それぞれ独立して置換または非置換されたC1−C40アルキル、少なくとも1つのヘテロ原子を含む置換または非置換されたC1−C40ヘテロアルキル、置換または非置換されたアリール及び置換または非置換されたヘテロアリールから選択されるか、互いに結合して環を形成し、
R1、R2、R3及びR4のうち少なくとも1つは、カルボキシル、カルボキシル誘導体、ヒドロキシル、ハロアルキル、求核体、アルデヒド、ケトン、ハロゲン化スルホニル、チオール、アミン、スルフヒドリル、アルケン、エポキシド及びホスホロアミダイトから選択される作用基であるか、前記作用基と共有結合可能な反応性基である。 - R1及びR2は、互いに結合して置換または非置換された環を形成する、請求項1又は請求項2に記載のクエンチャー。
- R1及びR2から選択される少なくとも1つは、隣接したR5と互いに結合して置換または非置換された環を形成する、請求項1又は請求項2に記載のクエンチャー。
- R3及びR4は、互いに結合して置換または非置換された環を形成する、請求項1又は請求項2に記載のクエンチャー。
- R3及びR4から選択される少なくとも1つは、隣接したR6と互いに結合して置換または非置換された環を形成する、請求項1又は請求項2に記載のクエンチャー。
- 前記反応性基は、カルボキシル、ヒドロキシル、ハロアルキル、求核体、アルデヒド、ケトン、ハロゲン化スルホニル、チオール、アミン、アルケン、エポキシド及びホスホロアミダイトから選択されており、前記反応性基は、保護基で保護される、請求項1に記載のクエンチャー。
- 請求項1〜請求項4のいずれか一項に記載のクエンチャー;
マイナーグルーブバインダー(MGB;minor groove binder);及び、
蛍光団;
を含むオリゴヌクレオチド。 - 前記蛍光団は、クマリン、シアニン、ボディピー、フルロセイン、ロダミン、ピレン、カルボピロニン、オキサジン、ザンテン、チオザンテン、アクリジン及び又はこの誘導体から選択される少なくとも1つである、請求項8に記載のオリゴヌクレオチド。
- 請求項8によるオリゴヌクレオチドを含む核酸検出用組成物。
- 請求項1〜請求項4のいずれか一項に記載のクエンチャー;
支持体;及び、
前記クエンチャーと前記支持体を連結するリンカー;
を含む、
核酸検出用支持体。 - 前記支持体は、ガラス、セルロース、ナイロン、アクリルアマイドゲル、デキストラン、ポリスチレン又はレジンである、請求項11に記載の核酸検出用支持体。
- 前記リンカーは、置換または非置換されたC1−C30アルキル、少なくとも1つのヘテロ原子を含む置換または非置換されたC2−C30ヘテロアルキル、置換または非置換されたC6−C30アリール及び置換または非置換されたC3−C30ヘテロアリールから選択される、請求項11に記載の核酸検出用支持体。
- (a)標的核酸、前記標的核酸を増幅させるために必要な試薬及び請求項8によるオリゴヌクレオチドを含む反応混合物を準備するステップ;
(b)前記反応混合物のうち、標的核酸を重合酵素連鎖反応によって増幅するステップ;及び、
(c)前記反応混合物の蛍光強度を測定するステップ;
を含む,
核酸検出方法。 - 前記ステップ(b)は、
(b−1)前記標的核酸に混成化されたオリゴヌクレオチドが重合酵素によって伸長されるステップ;
(b−2)前記重合酵素のエクソヌクレアーゼ活性によって前記標的核酸から前記オリゴヌクレオチドのクエンチャーと蛍光団が分離されるステップ;及び、
(b−3)前記クエンチャーから落ちた前記蛍光団が蛍光を発するステップ;
を含む、請求項14に記載の核酸検出方法。 - 前記ステップ(c)において測定された蛍光強度から標的核酸の増幅量を測定するステップ(d)をさらに含む、請求項14に記載の核酸検出方法。
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KR20170095943A (ko) * | 2014-12-18 | 2017-08-23 | 와코 쥰야꾸 고교 가부시키가이샤 | 소광제 |
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