JP2024084802A5 - - Google Patents

Download PDF

Info

Publication number
JP2024084802A5
JP2024084802A5 JP2024060146A JP2024060146A JP2024084802A5 JP 2024084802 A5 JP2024084802 A5 JP 2024084802A5 JP 2024060146 A JP2024060146 A JP 2024060146A JP 2024060146 A JP2024060146 A JP 2024060146A JP 2024084802 A5 JP2024084802 A5 JP 2024084802A5
Authority
JP
Japan
Prior art keywords
microsatellite
sample
cancer
nucleic acid
tumor
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Granted
Application number
JP2024060146A
Other languages
English (en)
Japanese (ja)
Other versions
JP2024084802A (ja
JP7699261B2 (ja
Filing date
Publication date
Priority claimed from PCT/US2019/048999 external-priority patent/WO2020047378A1/en
Application filed filed Critical
Publication of JP2024084802A publication Critical patent/JP2024084802A/ja
Publication of JP2024084802A5 publication Critical patent/JP2024084802A5/ja
Application granted granted Critical
Publication of JP7699261B2 publication Critical patent/JP7699261B2/ja
Active legal-status Critical Current
Anticipated expiration legal-status Critical

Links

JP2024060146A 2018-08-31 2024-04-03 無細胞dnaにおけるマイクロサテライト不安定性の検出 Active JP7699261B2 (ja)

Applications Claiming Priority (8)

Application Number Priority Date Filing Date Title
US201862726182P 2018-08-31 2018-08-31
US62/726,182 2018-08-31
US201962823578P 2019-03-25 2019-03-25
US62/823,578 2019-03-25
US201962857048P 2019-06-04 2019-06-04
US62/857,048 2019-06-04
PCT/US2019/048999 WO2020047378A1 (en) 2018-08-31 2019-08-30 Microsatellite instability detection in cell-free dna
JP2021510455A JP7539367B2 (ja) 2018-08-31 2019-08-30 無細胞dnaにおけるマイクロサテライト不安定性の検出

Related Parent Applications (1)

Application Number Title Priority Date Filing Date
JP2021510455A Division JP7539367B2 (ja) 2018-08-31 2019-08-30 無細胞dnaにおけるマイクロサテライト不安定性の検出

Publications (3)

Publication Number Publication Date
JP2024084802A JP2024084802A (ja) 2024-06-25
JP2024084802A5 true JP2024084802A5 (https=) 2024-11-26
JP7699261B2 JP7699261B2 (ja) 2025-06-26

Family

ID=67982149

Family Applications (2)

Application Number Title Priority Date Filing Date
JP2021510455A Active JP7539367B2 (ja) 2018-08-31 2019-08-30 無細胞dnaにおけるマイクロサテライト不安定性の検出
JP2024060146A Active JP7699261B2 (ja) 2018-08-31 2024-04-03 無細胞dnaにおけるマイクロサテライト不安定性の検出

Family Applications Before (1)

Application Number Title Priority Date Filing Date
JP2021510455A Active JP7539367B2 (ja) 2018-08-31 2019-08-30 無細胞dnaにおけるマイクロサテライト不安定性の検出

Country Status (9)

Country Link
US (7) US11773451B2 (https=)
EP (1) EP3844761A1 (https=)
JP (2) JP7539367B2 (https=)
KR (1) KR20210052511A (https=)
CN (2) CN121354685A (https=)
AU (2) AU2019328344B2 (https=)
CA (1) CA3109539A1 (https=)
SG (1) SG11202101400UA (https=)
WO (1) WO2020047378A1 (https=)

Families Citing this family (21)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN105190656B (zh) 2013-01-17 2018-01-16 佩索纳里斯公司 用于遗传分析的方法和系统
US10125399B2 (en) 2014-10-30 2018-11-13 Personalis, Inc. Methods for using mosaicism in nucleic acids sampled distal to their origin
US11299783B2 (en) 2016-05-27 2022-04-12 Personalis, Inc. Methods and systems for genetic analysis
EP4055610A4 (en) 2019-11-05 2023-11-29 Personalis, Inc. ESTIMATION OF TUMOR PURITY FROM SINGLE SAMPLES
EP4118238A4 (en) * 2020-03-12 2024-04-17 Personal Genome Diagnostics Inc. MICROSATELLITE INSTABILITY SIGNATURES
EP4127232A1 (en) * 2020-03-30 2023-02-08 Grail, LLC Cancer classification with synthetic spiked-in training samples
KR102717923B1 (ko) * 2020-12-07 2024-10-17 (주)디엑솜 현미부수체 지역의 서열 길이의 변동계수를 이용한 현미부수체 불안정성 진단방법
WO2022124575A1 (ko) * 2020-12-07 2022-06-16 (주)디엑솜 현미부수체 지역의 서열 길이의 변동계수를 이용한 현미부수체 불안정성 진단방법
CN117412765A (zh) * 2021-01-29 2024-01-16 国立卫生研究所 诊断msi癌症的方法
US20250131981A1 (en) * 2021-07-14 2025-04-24 Foundation Medicine, Inc. Methods and systems for determining microsatellite instability
CA3264290A1 (en) * 2021-08-09 2023-02-16 Canexia Health Inc. METHODS FOR IDENTIFYING HIGH INSTABILITY OF MICROSATELLITES (MSI-H) IN DNA SAMPLES
KR102688594B1 (ko) * 2021-08-10 2024-07-24 (주)디엑솜 현미부수체 지역의 서열 길이의 변화율을 이용한 현미부수체 불안정성 진단방법
KR102781271B1 (ko) * 2021-08-10 2025-03-17 (주)디엑솜 현미부수체 지역의 서열 길이의 최대값과 최소값의 차이를 이용한 현미부수체 불안정성 진단방법
CN113744251B (zh) * 2021-09-07 2023-08-29 上海桐树生物科技有限公司 基于自注意力机制从病理图片预测微卫星不稳定性的方法
EP4413580A4 (en) 2021-10-05 2025-08-13 Personalis Inc PERSONALIZED TESTS FOR PERSONALIZED CANCER MONITORING
CN114972163B (zh) * 2022-03-15 2025-02-18 常州桐树生物科技有限公司 基于图卷积神经网络识别微卫星不稳定性状态的方法
WO2023225560A1 (en) 2022-05-17 2023-11-23 Guardant Health, Inc. Methods for identifying druggable targets and treating cancer
WO2024103018A2 (en) * 2022-11-11 2024-05-16 Memorial Sloan-Kettering Cancer Center Methods for predicting cancer-associated venous thromboembolism using circulating tumor dna
CN117809744A (zh) * 2023-04-21 2024-04-02 苏州吉因加生物医学工程有限公司 一种筛选msi特征位点的方法、装置和存储介质
CN116312781B (zh) * 2023-05-17 2023-08-18 普瑞基准科技(北京)有限公司 一种基于机器学习的基因组不稳定性评估方法及系统
KR102799531B1 (ko) * 2024-09-27 2025-04-22 구본학 파이프용 후처리장치

Family Cites Families (48)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6582908B2 (en) 1990-12-06 2003-06-24 Affymetrix, Inc. Oligonucleotides
US20030017081A1 (en) 1994-02-10 2003-01-23 Affymetrix, Inc. Method and apparatus for imaging a sample on a device
JP3102800B2 (ja) 1994-08-19 2000-10-23 パーキン−エルマー コーポレイション 増幅及び連結反応の共役法
GB9620209D0 (en) 1996-09-27 1996-11-13 Cemu Bioteknik Ab Method of sequencing DNA
GB9626815D0 (en) 1996-12-23 1997-02-12 Cemu Bioteknik Ab Method of sequencing DNA
US6969488B2 (en) 1998-05-22 2005-11-29 Solexa, Inc. System and apparatus for sequential processing of analytes
AR021833A1 (es) 1998-09-30 2002-08-07 Applied Research Systems Metodos de amplificacion y secuenciacion de acido nucleico
US7501245B2 (en) 1999-06-28 2009-03-10 Helicos Biosciences Corp. Methods and apparatuses for analyzing polynucleotide sequences
US6818395B1 (en) 1999-06-28 2004-11-16 California Institute Of Technology Methods and apparatus for analyzing polynucleotide sequences
WO2001023610A2 (en) 1999-09-29 2001-04-05 Solexa Ltd. Polynucleotide sequencing
WO2002004680A2 (en) 2000-07-07 2002-01-17 Visigen Biotechnologies, Inc. Real-time sequence determination
AU2002359522A1 (en) 2001-11-28 2003-06-10 Applera Corporation Compositions and methods of selective nucleic acid isolation
US7169560B2 (en) 2003-11-12 2007-01-30 Helicos Biosciences Corporation Short cycle methods for sequencing polynucleotides
US7315019B2 (en) 2004-09-17 2008-01-01 Pacific Biosciences Of California, Inc. Arrays of optical confinements and uses thereof
US7170050B2 (en) 2004-09-17 2007-01-30 Pacific Biosciences Of California, Inc. Apparatus and methods for optical analysis of molecules
US7482120B2 (en) 2005-01-28 2009-01-27 Helicos Biosciences Corporation Methods and compositions for improving fidelity in a nucleic acid synthesis reaction
US7282337B1 (en) 2006-04-14 2007-10-16 Helicos Biosciences Corporation Methods for increasing accuracy of nucleic acid sequencing
EP2218794A1 (en) * 2009-02-13 2010-08-18 Alphagenics International SA Detection of instability in regions of genomic DNA containing simple tandem repeats
US20120135874A1 (en) * 2009-05-08 2012-05-31 The Johns Hopkins University Single molecule spectroscopy for analysis of cell-free nucleic acid biomarkers
US8835358B2 (en) 2009-12-15 2014-09-16 Cellular Research, Inc. Digital counting of individual molecules by stochastic attachment of diverse labels
BR112012029066A2 (pt) 2010-05-14 2020-09-01 The General Hospital Corporation composições e processos de identificação de neoantígenos específicos de tumor.
KR20190002733A (ko) 2010-12-30 2019-01-08 파운데이션 메디신 인코포레이티드 종양 샘플의 다유전자 분석의 최적화
EP2836606B1 (en) * 2012-04-10 2021-12-29 Vib Vzw Novel markers for detecting microsatellite instability in cancer and determining synthetic lethality with inhibition of the dna base excision repair pathway
GB2533006B (en) 2012-09-04 2017-06-07 Guardant Health Inc Systems and methods to detect copy number variation
US20160040229A1 (en) 2013-08-16 2016-02-11 Guardant Health, Inc. Systems and methods to detect rare mutations and copy number variation
WO2014099979A2 (en) * 2012-12-17 2014-06-26 Virginia Tech Intellectual Properties, Inc. Methods and compositions for identifying global microsatellite instability and for characterizing informative microsatellite loci
PE20161344A1 (es) 2014-01-02 2016-12-23 Memorial Sloan Kettering Cancer Center Determinantes de respuesta del cancer a la inmunoterapia
US20150292033A1 (en) 2014-04-10 2015-10-15 Dana-Farber Cancer Institute, Inc. Method of determining cancer prognosis
EP4098278A1 (en) 2014-11-13 2022-12-07 The Johns Hopkins University Checkpoint blockade and microsatellite instability
MA40737A (fr) 2014-11-21 2017-07-04 Memorial Sloan Kettering Cancer Center Déterminants de la réponse d'un cancer à une immunothérapie par blocage de pd-1
US10364468B2 (en) 2016-01-13 2019-07-30 Seven Bridges Genomics Inc. Systems and methods for analyzing circulating tumor DNA
EP3405574A4 (en) * 2016-01-22 2019-10-02 Grail, Inc. VARIANTS-BASED SICKNESS DIAGNOSTICS AND PURSUIT
MX2018010362A (es) 2016-02-29 2019-03-28 Found Medicine Inc Metodos y sistemas para evaluar carga mutacional de tumores.
CA3015913A1 (en) 2016-02-29 2017-09-08 Foundation Medicine, Inc. Methods of treating cancer
JP6821693B2 (ja) 2016-02-29 2021-01-27 ジェネンテック, インコーポレイテッド がんのための治療方法及び診断方法
TWI755395B (zh) 2016-05-13 2022-02-21 美商再生元醫藥公司 抗-pd-1抗體與輻射治療癌症之組合
US10294518B2 (en) 2016-09-16 2019-05-21 Fluxion Biosciences, Inc. Methods and systems for ultra-sensitive detection of genomic alterations
JP6560465B1 (ja) 2016-09-30 2019-08-21 ガーダント ヘルス, インコーポレイテッド 無細胞核酸の多重解像度分析のための方法
AU2017339517B2 (en) 2016-10-06 2024-03-14 Foundation Medicine, Inc. Therapeutic and diagnostic methods for cancer
CA3040930A1 (en) 2016-11-07 2018-05-11 Grail, Inc. Methods of identifying somatic mutational signatures for early cancer detection
CN106834479A (zh) * 2017-02-16 2017-06-13 凯杰(苏州)转化医学研究有限公司 肿瘤免疫治疗中微卫星不稳定状态分析体系
US20200024669A1 (en) 2017-03-20 2020-01-23 Caris Mpi, Inc. Genomic stability profiling
KR102922386B1 (ko) 2017-07-21 2026-02-04 제넨테크, 인크. 암에 대한 치료 및 진단 방법
CN107526944B (zh) * 2017-09-06 2018-08-24 南京世和基因生物技术有限公司 一种微卫星不稳定性的测序数据分析方法、装置及计算机可读介质
CA3083787A1 (en) 2017-12-01 2019-06-06 Personal Genome Diagnositics Inc. Process for microsatellite instability detection
US20190206513A1 (en) 2017-12-29 2019-07-04 Grail, Inc. Microsatellite instability detection
JP7514224B2 (ja) 2018-09-14 2024-07-10 レクセント バイオ, インコーポレイテッド マイクロサテライト不安定性を評価するための方法およびシステム
EP4008005B1 (en) 2019-08-01 2026-02-11 Tempus AI, Inc. Methods and systems for detecting microsatellite instability of a cancer in a liquid biopsy assay

Similar Documents

Publication Publication Date Title
JP2024084802A5 (https=)
JP2021535489A5 (https=)
Radke et al. The genomic and transcriptional landscape of primary central nervous system lymphoma
US12344902B2 (en) Microsatellite instability detection in cell-free DNA
JPWO2020047378A5 (https=)
JP2021531775A5 (https=)
Liu et al. Gastric cancer in the era of precision medicine
Katona et al. Gastric cancer genomics: advances and future directions
ES2906023T3 (es) Nuevos marcadores para detectar inestabilidad microsatelital en cáncer y determinar la letalidad sintética con inhibición de la vía de reparación por escisión de bases de ADN
Carpenter et al. Mutational impact of APOBEC3A and APOBEC3B in a human cell line and comparisons to breast cancer
EP3802878A1 (en) Methods and systems for determining the cellular origin of cell-free nucleic acids
WO2019178496A1 (en) Tissue-specific methylation marker
US20220028494A1 (en) Methods and systems for determining the cellular origin of cell-free dna
Wiemels et al. Chromosome 12p deletions in TEL-AML1 childhood acute lymphoblastic leukemia are associated with retrotransposon elements and occur postnatally
Baranovskaya et al. Down-regulation of epidermal growth factor receptor by selective expansion of a 5′-end regulatory dinucleotide repeat in colon cancer with microsatellite instability
US20240209456A1 (en) METHODS AND COMPOSITIONS RELATED TO CELL-CYCLE RNA's
Nassar et al. Epigenomic Charting and Functional Annotation of Risk Loci in Renal Cell CarcinomaEpigenomic Charting and Functional Annotation of Risk Loci in Renal Cell Carcinoma
Suzuki et al. From Genomic and Epigenomic Maps to Medicines in Adult T‐Cell Leukemia/Lymphoma
Schulz et al. Eagles report: Developing cancer biomarkers from genome-wide DNA methylation analyses
Toth et al. Molecular pathways and pathomorphology of colorectal cancers
García Sources of Genomic Instability in the Cancer Genome
CA3174880A1 (en) Microsatellite instability signatures
WO2024077037A1 (en) Methods and compositions related to non-coding variants for the prediction of response to cancer immunotherapy