JP2022526220A - 選択的なcdk12/13阻害剤としての置換された5-シクロプロピル-1h-ピラゾール-3-イル-アミン誘導体 - Google Patents
選択的なcdk12/13阻害剤としての置換された5-シクロプロピル-1h-ピラゾール-3-イル-アミン誘導体 Download PDFInfo
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- C07D231/02—Heterocyclic compounds containing 1,2-diazole or hydrogenated 1,2-diazole rings not condensed with other rings
- C07D231/10—Heterocyclic compounds containing 1,2-diazole or hydrogenated 1,2-diazole rings not condensed with other rings having two or three double bonds between ring members or between ring members and non-ring members
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Abstract
Description
式中、
X1とX2の各々は独立してCHまたはNであり、
Aはアリール、ヘテロアリールまたは単結合であって、ここで、アリールおよびヘテロアリールの各々は、ハロゲン、アルキル、およびアルコキシから独立して選択される1つ以上の置換基で随意に置換され、
R1は水素またはアルキルであり、
R2は水素または-(CH2)m-NRcRdであり、
RaおよびRbは各々独立して水素またはアルキルであり、代替的に、RaおよびRbは、それらが結合している炭素原子と一体となって、随意に置換されたシクロアルキル環を形成し、
RcおよびRdは各々独立して水素またはアルキルであり、代替的に、RcおよびRdは、それらが結合している窒素原子と一体となって、N、OおよびSから独立して選択される0~2の追加のヘテロ原子を含む随意に置換された複素環式環を形成し、
mは、1、2、または、3であり、および、
nは0、1、または2である。
X1とX2の各々は独立してCHまたはNであり、Aはアリール、ヘテロアリールまたは単結合であって、ここで、アリールおよびヘテロアリールの各々は、ハロゲン、アルキル、およびアルコキシから独立して選択される1つ以上の置換基で随意に置換され、
R1は水素またはアルキルであり、
R2は水素または-(CH2)m-NRcRdであり、
RaおよびRbは各々独立して水素またはアルキルであり、代替的に、RaおよびRbは、それらが結合している炭素原子と一体となって、随意に置換されたシクロアルキル環を形成し、
RcおよびRdは各々独立して水素またはアルキルであり、代替的に、RcおよびRdは、それらが結合している窒素原子と一体となって、N、OおよびSから独立して選択される0~2の追加のヘテロ原子を含む随意に置換された複素環式環を形成し、
mは、1、2、または3であり、および、
nは0、1、または2である。
X1とX2の各々は独立してCHまたはNであり、
Aはアリール、ヘテロアリールまたは単結合であり、ここで、各々のアリールおよびヘテロアリールは、ハロゲン、アルキル、およびアルコキシから独立して選択される1つ以上の置換基で随意に置換され、
R1はアルキルであり、
R2は水素または-(CH2)m-NRcRdであり、
RaおよびRbは各々独立して水素またはアルキルであり、代替的に、RaおよびRbは、それらが結合している炭素原子と一体となって、随意に置換されたシクロアルキル環を形成し、
RcおよびRdは各々独立して水素またはアルキルであり、代替的に、RcおよびRdは、それらが結合している窒素原子と一体となって、N、OおよびSから独立して選択される0~2の追加のヘテロ原子を含む随意に置換された複素環式環を形成し、
mは、1、2、または3であり、および、
nは0、1、または2である。
X1とX2の各々は独立してCHまたはNであり、
AはC6-C8アリール、または5~8員ヘテロアリールであり、ここで、各々のアリールおよびヘテロアリールは、随意に1つ以上のハロゲンで独立して置換され、
R1は水素またはアルキルであり、
R2は水素または-(CH2)m-NRcRdであり、
RaおよびRbは各々独立して水素またはアルキルであり、代替的に、RaおよびRbは、それらが結合している炭素原子と一体となって、随意に置換されたシクロアルキル環を形成し、
RcおよびRdは各々独立して水素またはアルキルであり、代替的に、RcおよびRdは、それらが結合している窒素原子と一体となって、N、OおよびSから独立して選択される0~2の追加のヘテロ原子を含む随意に置換された複素環式環を形成し、
mは1であり、および、
nは1である。
X1とX2の各々はCHであり、
Aはアリール、ヘテロアリールまたは単結合であり、ここで、各々のアリールおよびヘテロアリールは、ハロゲン、アルキル、およびアルコキシから独立して選択される1つ以上の置換基で随意に置換され、
R1は水素またはアルキルであり、
R2は水素または-(CH2)m-NRcRdであり、
RcおよびRdは各々独立して水素またはアルキルであり、代替的に、RcおよびRdは、それらが結合している窒素原子と一体となって、N、OおよびSから独立して選択される0~2の追加のヘテロ原子を含む随意に置換された複素環式環を形成し、および、mは1、2、または3である。
Aは随意に置換された単環式C6-C8アリール、または随意に置換された単環式の5-8員ヘテロアリール環である。
R1は水素またはアルキルであり、
R2は水素または-(CH2)m-NRcRdであり、
RcおよびRdは、それらが結合している窒素原子と一体となってN、OおよびSから独立して選択される0~2の追加のヘテロ原子を含む随意に置換された複素環式環を形成し、および、mは1~3である。
R1は水素またはアルキルであり、
R2は水素または-(CH2)-NRcRdであり、
RcおよびRdは、それらが結合している窒素原子と一体となってN、OおよびSから独立して選択される0~2の追加のヘテロ原子を含む随意に置換された複素環式環を形成する。
R1はアルキルであり、
R2は水素または-(CH2)m-NRcRdであり、
RcおよびRdは各々独立して水素またはアルキルであり、ここで、アルキルはメチルであり、代替的に、RcおよびRdは、それらが結合している窒素原子と一体となって、N、OおよびSから独立して選択される0~2の追加のヘテロ原子を含む随意に置換された複素環式環を形成し、および、mは1、2、または3である。
R1はアルキルであり、
R2は水素または-(CH2)-NRcRdであり、および
RcおよびRdは、それらが結合している窒素原子と一体となってN、OおよびSから独立して選択される0~2の追加のヘテロ原子を含む随意に置換された環を形成する。
R1は水素またはアルキルであり、
R2は水素または-(CH2)m-NRcRdであり、
RcおよびRdは、それらが結合している窒素原子と一体となってN、OおよびSから独立して選択される0~2の追加のヘテロ原子を含む随意に置換された複素環式環を形成し、および、mは1、2、または3である。
R1はアルキルであり、
R2は水素であり、
RaおよびRbは各々独立して水素またはアルキルであり、代替的に、RaおよびRbは、それらが結合している炭素原子と一体となって、随意に置換されたシクロアルキル環を形成し、および、
nは0~1である。
ある実施形態では、本発明は、式(I)の化合物、またはその薬学的に許容可能な塩、あるいは立体異性体、および少なくとも1つ薬学的に許容可能な担体または賦形剤を含む医薬組成物を提供する。
ある実施形態では、本発明は、薬剤として使用される化合物を提供する。
他に定義されない限り、本明細書で用いる全ての技術用語及び科学用語は、本明細書における主題が属する技術分野における当業者によって、一般に理解されるものと同じ意味を有する。明細書および添付請求項で使用されるように、特に明記がない限り、以下の用語は、本発明の理解を促進するための意味を示す。
CDK12/13特異的阻害剤の開発
本発明の主要目的は、国際公開第2016/193939に開示される化合物のCDK12/13特異性を改善することであった。驚くことに、中央の芳香族環の置換基の関係を、1,3関係(つまり、メタ置換された)から1,4関係(つまり、パラ置換された)へと変更することによって、CDK12/13受容体のための化合物の選択性が非常に改善されたことが発見された。
一般的なガイドラインに従うことは、本明細書で記載されるすべての実験手順に適応される。他は記載されない限り、実験を窒素の正圧下で実施し、記載の温度は、外部温度(つまり、油浴温度)である。供給業者から受け取った試薬および溶媒を、それ以上の乾燥または精製をすることなくそれ自体として使用する。本明細書で記載される溶液の試薬のモル濃度は、基準に対して事前の滴定によって証明されなかったため、近似値である。すべての反応は、磁気撹拌子下で撹拌した。0°Cより下の温度に冷却することは、アセトン/ドライアイスまたはウエットアイス/塩のいずれかの溶液を使用して行った。硫酸マグネシウムおよび硫酸ナトリウムは、反応が完成した後に溶媒の乾燥剤として使用し、交換可能である。減圧下、または真空下で溶媒を除去することは、ロータリーエバポレータで溶媒を蒸留することを意味する。
中間体-1:(E)-4-モルホリノ-N-(5-(4,4,5,5-テトラメチル-1,3,2-ジオキサボロラン-2-イル)ピリジン-2-イル)ブタ-2-エンアミド((E)-4-morpholino-N-(5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridin-2-yl)but-2-enamid)の合成
THF(500mL)中の2-(4-ブロモフェニルプロパン酸(65g、0.28mol)の溶液にN-メチルモルホリン(33mL、0.3mol)とピバロイルクロリド(37mL、0.3mol)を立て続けに0℃で添加した。反応混合物を室温まで温め、3時間撹拌した。その間に、別のRBF n-BuLi(ヘキサン、116mL、0.28mol中の2.5M)を、-78℃にあるTHF中の(S)-4-ベンジル-2-オキサゾリジノン(50g、0.28mol)の溶液に添加し、1時間撹拌した。前に作った反応混合物を、この混合へ-78°Cにて0.5時間かけてゆっくりと添加し、同じ温度で1時間撹拌した。反応を飽和NH4Cl溶液でクエンチし、そして有機相を水層から分離した。水層を酢酸エチルでさらに抽出し、また、合わせた有機層を無水硫酸ナトリウム上で乾燥し、そして減圧下で濃縮して粗製化合物を得た。(S)-4-ベンジル-3-((S)-2-(4-ブロモフェニル)プロパノイル)オキサゾリジン-2-オンと(S)-4-ベンジル-3-((R)-2-(4-ブロモフェニル)プロパノイル)オキサゾリジン-2-オンの混合物を含む粗製生成物を、97%-30%ヘキサン-酢酸エチルで溶出することによるシリカカラムクロマトグラフィーで精製し、望ましい生成物(S)-4-ベンジル-3-((S)-2-(4-ブロモフェニル)プロパノイル)オキサゾリジン-2-オン(42)を単離した。(42g,38.5%)、LCMS:m/z=386(M-H)-,キラルHPLC:98.84%,rt:7.54分。
LiOH(9.3g、0.22mol)を水(150ml)中に溶解し、そしてTHF(250mL)とH2O2(30%w/v溶液、40mL、0.33mol)中の(S)-4-ベンジル-3-((S)-2-(4-ブロモフェニル)プロパノイル)オキサゾリジン-2-オン(42g,0.11mol)に0℃で添加した。反応混合物を室温まで冷まし、そして2時間撹拌した。反応マスを飽和Na2SO3溶液でクエンチし、エーテルで薄めた。有機相を水層から分離し、酢酸エチルで2度洗浄した。分離した水層を2N HClを使用して酸性化し、DCMで2度抽出し、され、ブラインで洗浄し、無水硫酸ナトリウム上で乾燥し、そして真空下で濃縮して、粗製混合物を得た。移動相として酢酸エチル:ヘキサン(3:97)混合物を使用することにより粗製物をさらに精製し、表題化合物(17g、67%)を得た。1HNMR(CDCl3,400MHz):δ 7.26-7.01(m,1H),7.47-7.44(m,1H),3.71-3.69(m,1H)、1.51(d,3H)、 LCMS:m/z=228.9(M-H)+,HPLC:99.60%、キラルHPLC;99.33%,rt:8.91分。
(S)-2-(4-ブロモフェニル)プロパン酸(16.5g、73mmol)をドライDCM(100ml)中に溶解し、塩化オキサリル(11.1g、88のミリモル)を0℃で添加し、続いて、同じ温度で30分間、触媒量のDMFを滴下し、および撹拌した。反応マスを室温まで温め、さらに2時間撹拌した。溶媒と塩化オキサリルの超過量を普通減圧下で蒸発乾固させた。残渣をトルエン中に再溶解し、そしてトルエン(250mL)中のtert-ブチル(3-アミノ-5-シクロプロピル-1H-ピラゾール-1-カルボキシレート(16.5g、73mmol)と1,8-ビス(ジメチルアミノ)ナフタレン(プロトンスポンジ)(15.6g、73mmol)の溶液に0℃で添加した。反応混合物を2時間撹拌し、その後、溶媒を減圧下で除去し、そして残渣をDCM中に溶解し、水で洗浄し、無水硫酸ナトリウム上で乾燥して蒸発乾固させ、褐色の残渣を得た。粗製化合物を、カラムクロマトグラフィー(ヘキサン中の酢酸エチルの10%)によってさらに精製し、純粋な化合物(15g、47%)を得た。LCMS:m/z=434.05(M+H)+,HPLC:96.10%、キラルHPLC;98.84%,rt:6.64分。
特性記述データ:1HNMR(DMSO-d6,400MHz):δ 10.20(s,1H),8.34-8.33(m,1H),7.81-7.78(m,1H),7.51-7.48(m,1H),6.31(s,1H),3.89(s,2H),1.90-1.85(m,1H),1.56(s,9H),0.93-0.86(m,2H),0.68-0.63(m,2H)。LCMS:m/z=377.10(M+H)+。
本発明は、本発明にかかる化合物の調製を例示する次の例によってさらに例証されるが、これらに制限されない。
異性体-1(化合物-2):1HNMR(DMSO-d6,400MHz):δ 12.0(brs,1H),10.42(s,1H),10.17(s,1H),7.75(d,2H),7.62-7.57(m,4H),7.43(d,2H),6.48-6.41(m,1H),6.28(d,1H),6.14(s,1H),5.78(m,1H),3.87-3.85(m,1H),1.81-1.80(m,1H),1.39(d,3H),0.88-0.86(m,2H),0.60-0.58(m,2H)。LCMS:m/z=401.15(M+H)+;HPLC:98.26%,rt:7.01分;キラルHPLC:99.4%,rt:7.54分。
異性体-2(化合物-3):1HNMR(DMSO-d6):δ 12.0(brs,1H),10.42(s,1H),10.17(s,1H),7.75(d,2H),7.62-7.57(m,4H),7.43(d,2H),6.48-6.41(m,1H),6.28(d,1H),6.14(s,1H),5.78(m,1H),3.87-3.85(m,1H),1.81-1.80(m,1H),1.39(d,3H),0.88-0.86(m,2H),0.60-0.58(m,2H)。LCMS:m/z=401.15(M+H)+;HPLC:96.50%,rt:7.00分;キラルHPLC:98.63%,rt:8.58分。
1,4-ジオキサン(100ml)中のtert-ブチル5-(2-(4-ブロモフェニル)プロパンアミド)-3-シクロプロピル-1H-ピラゾール-1-カルボキシレート(4g、9.20mmol)(中間体-4)と4,4,4’,4’,5,5,5’,5’-オクタメチル-2,2’-ビ(1,3,2-ジオキサボロラン(4,4,4’,4’,5,5,5’,5’-octamethyl-2,2’-bi(1,3,2-dioxaborolane)(2.6g、10.10mol)のガス抜きされた溶液に酢酸カリウム(1.81g、18.4mmol)を添加した。反応マスをRTでガス抜きしながら10分間撹拌し、そして、PdCl2(dppf).DCM混合物(0.38g,0.46mmol)を添加した。反応マスを100℃で4時間加熱した。反応混合物とRTまで冷まし、そしてセライト床で濾過し、濾液を蒸発乾固させて暗褐色の液体を得た。粗製材料をヘキサン中の20%酢酸エチルで溶出することによるシリカカラムクロマトグラフィーによって精製し、表題化合物(3.5g、79%)を得た、LCMS:m/z=482.2(M+H)+.
1,4-ジオキサン(30ml)と水(7mL)中の、tert-ブチル3-シクロプロピル-5-(2-(4-(4,4,5,5-テトラメチル-1,3,2-ジオキサボロラン-2-イル)フェニル)プロパンアミド)-1H-ピラゾール-1-カルボキシレート(3.5g、7.24mmol)とN-(4-ブロモベンジル)アクリルアミド(1.72g、7.24のmmol)(合成は参考文献WO2016/193939 A1に記載されているとおり行なわれた)のガス抜きされた溶液に、Cs2CO3(4.68g,14.4mmol)を添加した。反応マスをガス抜きしながら10分間撹拌し、そして、Pd(PPh3)4(0.42g,0.036mmol)を添加し、反応マスを密封管において100℃で4時間加熱した。反応混合物をRTまで冷まし、そしてセライト床で濾過し、濾液のために層を分離し、そして酢酸エチルで水層を再抽出した。合わせた有機層を蒸発乾固させ、そしてDCM中の10%メタノールで溶出することによるシリカカラムクロマトグラフィーによって粗製材料を精製し、所望の純粋な化合物(0.95g,33%)を得た。1HNMR(DMSO-d6,400MHz):δ 12.1(s,1H),10.42(s,1H),8.64-8.61(m,1H),7.60-7.56(m,3H),7.44-7.42(m,2H),7.34-7.32(m,2H),6.31-6.24(m,2H),6.15-6.10(m,2H),5.63-5.60(m,1H),4.37(d,2H),3.88-3.84(m,1H),1.82-1.78(m,1H),1.39(d,3H),0.88-0.86(m,2H),0.62-0.61(m,2H)。LCMS:m/z=415.4(M+H)+;HPLC:90.8%,rt:6.27分。
異性体-1(化合物-10):1HNMR(DMSO-d6,400MHz):δ 12.1(s,1H),10.42(s,1H),8.64-8.61(m,1H),7.60-7.56(m,3H),7.44-7.42(m,2H),7.34-7.32(m,2H),6.31-6.24(m,2H),6.15-6.10(m,2H),5.63-5.60(m,1H),4.37(d,2H),3.88-3.84(m,1H),1.82-1.78(m,1H),1.39(d,3H),0.88-0.86(m,2H),0.62-0.61(m,2H)。LCMS:m/z=415.4(M+H)+;HPLC:91.01%,rt:11.43分;キラルHPLC:92.54%,rt:8.03分。
異性体-2(化合物-11):1HNMR(DMSO-d6,400MHz):δ 12.1(s,1H),10.42(s,1H),8.64-8.61(m,1H),7.60-7.56(m,3H),7.44-7.42(m,2H),7.34-7.32(m,2H),6.31-6.24(m,2H),6.15-6.10(m,2H),5.63-5.60(m,1H),4.37(d,2H),3.88-3.84(m,1H),1.82-1.78(m,1H),1.39(d,3H),0.88-0.86(m,2H),0.62-0.61(m,2H)。LCMS:m/z=415.4(M+H)+;HPLC:98.38%,rt:5.02分;キラルHPLC:96.45%,rt:6.65分。
0℃に冷却されたDMF(2ml)中の2-(4-シアノフェニル)プロパン酸(0.3g、1.70mmol)の溶液にHATU(0.97g、2.55mmol)を添加し、続いてDIPEA(0.43mL,3.4mmol))を添加し、そしてtert-ブチル3-アミノ-5-シクロプロピル-1H-ピラゾール-1-カルボキシレート(0.38g、1.70mmol)を最後に添加した。反応混合物を室温で8時間撹拌した。反応混合物を氷水でクエンチし、酢酸エチルで希釈した。水層を分離させ、酢酸エチル(2x10mL)で抽出した。合わさった有機相をブラインで洗浄し、粗製残渣をNa2SO4上で乾燥させ、濾過し、濃縮し、移動相としてのヘキサン中の20%EtOAcを使用して、combiカラムによってその粗製残渣を精製し、0.40g(61%)の所望の生成物を得た。LCMS:m/z=381(M+H)+.
MeOH(15mL)中の、tert-ブチル3-(2-(4-シアノフェニル)プロパンアミド)-5-シクロプロピル-1H-ピラゾール-1-カルボキシレート(0.75g、1.96mmol)、(Boc)2O(0.47g、2.15mmol)、およびNiCl2.6H2O(0.232g、0.98mmol)の撹拌された懸濁液に、NaBH4(0.37g、9.8mmol)を-10℃で添加し、室温でさらに3時間撹拌した。反応の完了後、溶媒を留出し、水で希釈した。水層を、EtOAc(25mL×3)で抽出した。合わさった有機抽出物を水、ブライン溶液で洗浄し、そして無水Na2SO4上で乾燥した。有機層を、減圧下で濃縮し、そして得られた残渣を、移動相としてのヘキサン中の20%-50%EtOAcを使用して、combiカラムによって精製し、0.35g(36.66%)の表題生成物を得た。LCMS:m/z 346.1(M+H)+.
DCM(2mL)中のtert-ブチル3-(2-(4-(((tert-ブトキシカルボニル)アミノ)メチル)フェニル)プロパンアミド)-5-シクロプロピル-1H-ピラゾール-1-カルボキシレート(0.35g、1.30mmol)の溶液に、 TFA(1mL)を室温で添加し、そして同じ温度にてアルゴン雰囲気下でさらに1時間撹拌した。反応の完了後、溶媒を留出し、反応混合物を水(30ml)で希釈し、その後さらに、それを飽和K2CO3溶液(pH=~12)で塩基化した。水層をDCM(30mL x 3)中の20%メタノールで抽出した。合わさった有機層を、水、ブライン溶液で洗浄し、そして無水のNa2SO4上で乾燥させ、そして減圧下で濃縮し、0.22g(79%)の2-(4-(アミノメチル)フェニル)-N-(5-シクロプロピル-1H-ピラゾール-3-イル)プロパンアミドを得た。LCMS:m/z=285.1(M+H)+.
ACN(10mL)中の2-(4-(アミノメチル)フェニル)-N-(5-シクロプロピル-1H-ピラゾール-3-イル)プロパンアミド(0.22g、0.57mmol)の溶液に水(2ml)、DIPEA(0.15mL、1.13mmol)、および塩化アクリロイル(0.051g、0.57mmol)を0℃で添加した。30分後、反応混合物を氷水でクエンチし、DCMで希釈した。水層を分離させ、そしてDCM(2×10mL)で抽出した。合わさった有機相をブラインで洗浄し、Na2SO4上で乾燥させ、濾過し、濃縮した。MeOH-DCM中の0-5%メタノールで溶出することによるシリカカラムクロマトグラフィーによって粗製残渣を精製し、表題化合物(0.95g,33%)を得た。1HNMR(DMSO-d6,400MHz):δ 12.0(s,1H),10.35(s,1H),8.54-8.52(m,1H),7.31-7.29(m,2H),7.20-7.18(m,2H),6.28-6.21(m,1H),6.12-6.09(m,2H),5.61-5.71(m,1H),4.29(d,2H),3.81-3.79(m,1H),1.82-1.80(m,1H),1.34(d,3H),0.88-0.81(m,2H),0.62-0.60(m,2H)。LCMS:m/z=339.3(M+H)+;HPLC:98.90%,rt:6.23分。
異性体-1(化合物-24):1HNMR(DMSO-d6,400MHz):δ 12.0(s,1H),10.35(s,1H),8.54-8.52(m,1H),7.31-7.29(m,2H),7.20-7.18(m,2H),6.28-6.21(m,1H),6.12-6.09(m,2H),5.61-5.71(m,1H),4.29(d,2H),3.81-3.79(m,1H),1.82-1.80(m,1H),1.34(d,3H),0.88-0.81(m,2H),0.62-0.60(m,2H)。LCMS:m/z=339.3(M+H)+;HPLC:97.74%,rt:3.55分 キラルHPLC:99.14%,rt:7.63分。
異性体-2(化合物-25):1HNMR(DMSO-d6,400MHz):δ 12.0(s,1H),10.35(s,1H),8.54-8.52(m,1H),7.31-7.29(m,2H),7.20-7.18(m,2H),6.28-6.21(m,1H),6.12-6.09(m,2H),5.61-5.71(m,1H),4.29(d,2H),3.81-3.79(m,1H),1.82-1.80(m,1H),1.34(d,3H),0.88-0.81(m,2H),0.62-0.60(m,2H).LCMS:m/z=339.3(M+H)+;HPLC:97.29%,rt:3.54分;キラルHPLC:94.23%,rt:9.21分。
Jurkat細胞を様々な濃度の化合物で6時間処理した。DMSO濃度は0.1%に維持した。細胞を収穫し、そして溶解させた。溶解物の200μgを1mMのDTT存在下で1μMBio-THZ531を用いてインキュベートし、そしてロッカーにおいて4℃にて夜通しインキュベートした。このサンプルを100μL、下洗い済のストレプトアビジンでコーティングされたプレートに加え、ロッカーにおいて2時間、室温でインキュベートした。前記プレートを洗浄し、そして4℃にて夜通しCDK12抗体と共にインキュベートした。翌日、プレートを洗浄し、そしてHRP標識抗ウサギ第2抗体と共に2時間をインキュベートした。TMB基質を使用してBio-THZ531に結合されたCDK12を測定した。M3分光測光器を使用して、450nMと570nMでプレートを読み取った。試験化合物によるCDK12の占有率を、未処理の対照と比較して算出した。GraphPad PrismソフトウェアV5を用いて、用量応答データをシグモイド曲線適合式に当てはめることにより、Occupancy50を算出した。
Jurkat細胞を96ウェルの種は円底プレート中に播種し、そして様々な濃度の化合物で処置した。最終のDMSO濃度を0.1%に維持した。10μMおよび1/3rdの系列希釈で始まる9ポイントの用量応答フォーマットにおいて化合物をスクリーニングした。72時間の終わりに、細胞をスピンダウンし、そして媒質を吸引した。媒体を含んでいる50μLのXTTをウェルに加えた。M3分光光度計を使用して、465nMでプレートを読み取った。GraphPad PrismソフトウェアV5を用いて、用量応答データをシグモイド曲線適合式に当てはめることにより、EC50を算出した。
キナーゼでタグ付けされたT7ファージ株を、24ウェルブロックにおいてBL21株由来の大腸菌ホスト中で平行して育てた。大腸菌を対数期まで増殖させ、凍結株由来のT7ファージに感染させ(感染多重度=0.4)、そして溶解するまで振盪しながら32℃でインキュベートした(90-150分間)。溶解物を遠心分離機にかけ(6,000のxg)、および濾過して(0.2μm)、細胞残屑を除去した。残りのキナーゼをHEK-293細胞において生成し、続いて、qPCR検出のためにDNAでタグ付けした。ストレプトアビジンでコーティングされた磁気ビーズを、室温にて30分間、ビオチン化された小分子配位子で処置し、キナーゼ・アッセイに対する親和性樹脂剤を生成した。リガンド化ビードを、超過ビオチンでブロックし、そしてブロッキングバッファ(SeaBlock(Pierce)、1%BSA、0.05%Tween 20、1mM DTT)で洗浄し、結合されないリガンドを除去し、および非特異性のファージ結合を減少させた。1x結合緩衝液(20%のSeaBlock、0.17xPBS、0.05%のTween 20、6mMのDTT)において、キナーゼ、リガンド化親和性ビーズ、および試験化合物を組み合わせることによって、結合反応を組み立てた。試験化合物を40倍のストックとして調製し、アッセイ中に直接希釈された。反応はすべて、ポリプロピレン384-ウェルプレートにおいて0.02mlの最終体積中で行なった。アッセイプレートを、1時間、振盪しながら室温でインキュベートし、親和性ビーズを洗浄緩衝液(1xPBS、0.05%のTween 20)で洗浄した。その後、ビーズは、溶出緩衝液(1xPBS、0.05%のTween 20、0.5μMのビオチン化されていない親和性リガンド)において再懸濁し、30分間、振盪しながら室温でインキュベートした。溶離液におけるキナーゼ濃度をqPCRによって測定した。
LanthaScreen Eu キナーゼ結合アッセイは、関心キナーゼに対するAlexa Fluor 647で標識されたATP競合キナーゼ阻害剤スカフォード(キナーゼトレーサー)の結合と置換に基づく。CDK13(5nM)キナーゼへのキナーゼトレーサー236(100nM)の結合は、ユウロピウムで標識された、キナーゼに結合する抗GSTタグ抗体(2nM)を使用することにより、検出される。キナーゼへのトレーサーと抗体の同時結合は、キナーゼトレーサー上のユウロピウム(Eu)ドナー蛍光体からAlexaFluor(商標)647アクセプタ蛍光体まで高度のFRET(蛍光共鳴エネルギー転移)をもたらす。キナーゼへの阻害剤の結合は、トレーサーと結合することと競合し、FRET信号の喪失をもたらす。
試験化合物の阻害活性をLANCE TR-FRETアッセイによって評価し、それは、CDK7(10nM)によりULightミエリン塩基性蛋白質(MBP)基質ペプチド(100nM)のATP依存性のリン酸化を検出した。簡潔に、反応緩衝液(20mM HEPES(pH7.5)、10mM MgCl2、0.01%Triton x、100μMオルトバナジウム酸ナトリウム(Sodium Orthovanadate)、1mM DTT)の中で酵素反応を実行した。アッセイは384ウェルプレートにおいて行なわれた。ATP基質の最終濃度は1mM/100μM、およびULight-MBP基質ペプチドの最終濃度は100nM、および、CDK7は10nMだった。化合物と酵素のプレ・インキュベーションを室温で60分間行なった。室温での60分間のインキュベーションの後、40mMのEDTAおよび1nMのEu標識化抗-フォスフォ-MBP-結合タンパク質抗体を追加することによって反応を終了させた。2030マルチラベルリーダーVictor5(PerkinElmer)を使用することにより、時間分解蛍光(励起320nm;発光ドナー615nm;発光アクセプタ665nm)をモニターした。読み出しは(アクセプタ数/ドナー数)×1000として算出された。は、阻害剤濃度に関するアッセイ読み出しのプロットに対してS字結腸の用量応答曲線を適合させることにより、IC50値を導出した。適合はすべて、Prism5.03(Graph Pad Software,San Diego,CA)プログラムを用いて計算した。
Claims (33)
- 式(I)の化合物
式中、X1とX2の各々は独立してCHまたはNであり、
Aはアリール、ヘテロアリールまたは単結合であって、ここで、アリールおよびヘテロアリールの各々は、ハロゲン、アルキル、およびアルコキシから独立して選択される1つ以上の置換基で随意に置換され、
R1は水素またはアルキルであり、
R2は水素または-(CH2)m-NRcRdであり、
RaおよびRbは各々独立して水素またはアルキルであり、
代替的に、RaおよびRbは、それらが結合している炭素原子と一体となって、随意に置換されたシクロアルキル環を形成し、
RcおよびRdは各々独立して水素またはアルキルであり、
代替的に、RcおよびRdは、それらが結合している窒素原子と一体となって、N、OおよびSから独立して選択される0~2の追加のヘテロ原子を含む随意に置換された複素環式環を形成し、
mは、1、2、または、3であり、
および、nは0、1、または2である、化合物、またはその薬学的に許容可能な塩、N-オキシド、あるいは立体異性体。 - R1は水素またはアルキルであり、R2は水素または-(CH2)m-NRcRdであり、
RcおよびRdは、それらが結合している窒素原子と一体となってN、OおよびSから独立して選択される0~2の追加のヘテロ原子を含む随意に置換された複素環式環を形成し、および、mは1、2、または3である、請求項1~8および請求項12~13のいずれかに記載の化合物、またはその薬学的に許容可能な塩、N-オキシド、あるいは立体異性体。 - R2はHまたはモルホリノメチルである、請求項1~8および請求項11~15のいずれかに記載の化合物、またはその薬学的に許容可能な塩、N-オキシド、あるいは立体異性体。
- 請求項1~18のいずれか1つに記載の化合物、またはその薬学的に許容可能な塩、あるいは立体異性体、および少なくとも1つの薬学的に許容可能な担体または賦形剤を含む、医薬組成物。
- CDK12/13の異常な活性に関連する疾患または疾病に苦しんでいる被験体の処置で使用するための、請求項19に記載の医薬構成物。
- 薬剤として使用するための、請求項1~18のいずれか1つに記載の化合物、またはその薬学的に許容可能な塩、あるいは立体異性体。
- 癌、炎症性疾患、自己炎症性疾患、または感染症の処置に使用するための、請求項1~18のいずれか1つに記載の化合物。
- 癌の処置に使用するための、請求項21に記載の化合物。
- 癌は、乳房、肝臓、肺、結腸、腎臓、膀胱の癌を含み、小細胞肺癌、非小細胞肺癌、頭部および頸部、甲状腺、食道、胃、膵臓、卵巣、胆嚢、子宮頚部、前立腺の癌および扁平上皮癌を含む皮膚の癌を含む癌、白血病、急性リンパ芽球性白血病、急性リンパ性白血病、ホジキンリンパ腫、非ホジキンリンパ腫、B細胞リンパ腫、T細胞リンパ腫、毛様細胞リンパ腫、髄腫、外套細胞リンパ腫、およびバーケットリンパ腫を含むリンパ系造血腫瘍、急性骨髄性白血病、慢性骨髄性白血病、骨髄異形成症候群、および前骨髄性白血病を含む骨髄細胞系造血腫瘍、線維肉腫および横紋筋肉腫を含む間葉由来の腫瘍、星細胞腫、神経芽腫、神経膠腫およびシュワン細胞腫を含む中枢神経系および末梢神経系の腫瘍、および精上皮腫、黒色腫、骨肉腫、奇形癌、角化棘細胞腫、色素性乾皮症、甲状腺濾胞癌およびカポジ肉腫を含む他の腫瘍からなる群から選択される、請求項22に記載の化合物。
- 筋強直性ジストロフィー1型、筋強直性ジストロフィー2型、脆弱性X関連振戦/運動失調症候群、筋萎縮性側索硬化症(ALS)および前頭側頭型認知症、ハンチントン病様2、ハンチントン病、いくつかのタイプの脊髄小脳失調症、歯状核赤核・淡蒼球ルイ体萎縮症および球脊髄性筋萎縮症の処置に使用するための、請求項1~18のいずれか1つに記載の化合物、またはその薬学的に許容可能な塩、N-オキシド、あるいは立体異性体。
- 被験体においてCDK12/13を阻害する方法であって、該方法は、請求項1~18のいずれか1つに記載の化合物を被験体に投与する工程を含む、方法。
- 被験体においてCDK12/13によって媒介される疾患および/または障害、あるいは疾病を処置するまたは予防する方法であって、該方法は、前記方法を必要とする被験体に請求項1~18のいずれか1つに記載の化合物、またはその薬学的に許容可能な塩の治療上有効な量で投与する工程を含む、方法。
- CDK12/13によって媒介される障害または疾患、または疾病は、癌、炎症性疾患、自己炎症性疾患、および感染症からなる群から選択される、請求項26~27に記載の方法。
- 癌は、乳房、肝臓、肺、結腸、腎臓、膀胱の癌を含み、小細胞肺癌、非小細胞肺癌、頭部および頸部、甲状腺、食道、胃、膵臓、卵巣、胆嚢、子宮頚部、前立腺の癌および扁平上皮癌を含む皮膚の癌を含む癌、白血病、急性リンパ芽球性白血病、急性リンパ性白血病、ホジキンリンパ腫、非ホジキンリンパ腫、B細胞リンパ腫、T細胞リンパ腫、毛様細胞リンパ腫、髄腫、外套細胞リンパ腫、およびバーケットリンパ腫を含むリンパ系造血腫瘍、急性骨髄性白血病、慢性骨髄性白血病、骨髄異形成症候群、および前骨髄性白血病を含む骨髄細胞系造血腫瘍、線維肉腫および横紋筋肉腫を含む間葉由来の腫瘍、星細胞腫、神経芽腫、神経膠腫およびシュワン細胞腫を含む中枢神経系および末梢神経系の腫瘍、および精上皮腫、黒色腫、骨肉腫、奇形癌、角化棘細胞腫、色素性乾皮症、甲状腺濾胞癌およびカポジ肉腫を含む他の腫瘍からなる群から選択される、請求項28に記載の方法。
- CDK12/13によって媒介される病気または疾患は、筋強直性ジストロフィー型、筋強直性ジストロフィー2型、脆弱性X関連振戦/運動失調症候群、筋萎縮性側索硬化症(ALS)および前頭側頭型認知症、ハンチントン病様2、ハンチントン病、いくつかのタイプの脊髄小脳失調症、歯状核赤核・淡蒼球ルイ体萎縮症および球脊髄性筋萎縮症である、請求項27に記載の方法。
- 被験体に、抗増殖剤、抗癌剤、免疫抑制剤および鎮痛剤から独立して選択される1つ以上の化学療法剤を投与する工程をさらに含む、請求項26~30のいずれか1つに記載の方法。
- 被験体がヒトを含む哺乳動物である、請求項26~31のいずれか1つに記載の方法。
- 癌の処置のための薬剤の製造における請求項1~18のいずれか1つに記載の化合物の使用。
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