JP2018509896A5 - - Google Patents

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Publication number
JP2018509896A5
JP2018509896A5 JP2017542907A JP2017542907A JP2018509896A5 JP 2018509896 A5 JP2018509896 A5 JP 2018509896A5 JP 2017542907 A JP2017542907 A JP 2017542907A JP 2017542907 A JP2017542907 A JP 2017542907A JP 2018509896 A5 JP2018509896 A5 JP 2018509896A5
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JP
Japan
Prior art keywords
linker
barcode
umi
capture
nucleotide sequence
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Pending
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JP2017542907A
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English (en)
Japanese (ja)
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JP2018509896A (ja
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Priority claimed from PCT/US2016/019952 external-priority patent/WO2016138490A1/en
Publication of JP2018509896A publication Critical patent/JP2018509896A/ja
Publication of JP2018509896A5 publication Critical patent/JP2018509896A5/ja
Pending legal-status Critical Current

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JP2017542907A 2015-02-27 2016-02-26 高処理能力研究用の単一細胞核酸 Pending JP2018509896A (ja)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US201562126349P 2015-02-27 2015-02-27
US62/126,349 2015-02-27
PCT/US2016/019952 WO2016138490A1 (en) 2015-02-27 2016-02-26 Single-cell nucleic acids for high-throughput studies

Publications (2)

Publication Number Publication Date
JP2018509896A JP2018509896A (ja) 2018-04-12
JP2018509896A5 true JP2018509896A5 (https=) 2019-04-04

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Application Number Title Priority Date Filing Date
JP2017542907A Pending JP2018509896A (ja) 2015-02-27 2016-02-26 高処理能力研究用の単一細胞核酸

Country Status (7)

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US (2) US10190163B2 (https=)
EP (1) EP3262214B1 (https=)
JP (1) JP2018509896A (https=)
CN (1) CN107250445A (https=)
CA (1) CA2976681A1 (https=)
SG (1) SG11201706636PA (https=)
WO (1) WO2016138490A1 (https=)

Families Citing this family (45)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
SG174617A1 (en) 2009-04-02 2011-10-28 Fluidigm Corp Multi-primer amplification method for barcoding of target nucleic acids
US8835358B2 (en) 2009-12-15 2014-09-16 Cellular Research, Inc. Digital counting of individual molecules by stochastic attachment of diverse labels
SG10201605049QA (en) 2011-05-20 2016-07-28 Fluidigm Corp Nucleic acid encoding reactions
US9404864B2 (en) 2013-03-13 2016-08-02 Denovo Sciences, Inc. System for imaging captured cells
US10466160B2 (en) 2011-08-01 2019-11-05 Celsee Diagnostics, Inc. System and method for retrieving and analyzing particles
CN103998394B (zh) 2011-08-01 2016-08-17 德诺弗科学公司 细胞捕获系统和使用方法
US9752181B2 (en) 2013-01-26 2017-09-05 Denovo Sciences, Inc. System and method for capturing and analyzing cells
US9707562B2 (en) 2013-03-13 2017-07-18 Denovo Sciences, Inc. System for capturing and analyzing cells
US10391490B2 (en) 2013-05-31 2019-08-27 Celsee Diagnostics, Inc. System and method for isolating and analyzing cells
US9856535B2 (en) 2013-05-31 2018-01-02 Denovo Sciences, Inc. System for isolating cells
CN107250445A (zh) 2015-02-27 2017-10-13 富鲁达公司 用于高通量研究的单个细胞核酸
JP7064439B2 (ja) * 2015-11-04 2022-05-10 アトレカ インコーポレイテッド 単一細胞に関連する核酸の解析のための、核酸バーコードの組み合わせセット
CN108603224B (zh) 2015-12-16 2022-06-28 富鲁达公司 高水平多路复用扩增
US10202641B2 (en) 2016-05-31 2019-02-12 Cellular Research, Inc. Error correction in amplification of samples
IL266197B2 (en) 2016-10-24 2024-03-01 Geneinfosec Inc Hiding information contained within nucleic acids
CN110520541B (zh) * 2017-02-13 2024-03-26 耶鲁大学 高通量单细胞多组学
CN110719959B (zh) 2017-06-05 2021-08-06 贝克顿迪金森公司 针对单细胞的样品索引
US20200123539A1 (en) * 2017-06-20 2020-04-23 uBiome, Inc. Method and system for library preparation with unique molecular identifiers
US10391492B2 (en) 2017-08-29 2019-08-27 Celsee Diagnostics, Inc. System and method for isolating and analyzing cells
EP3676396B1 (en) * 2017-08-30 2022-04-06 Kapa Biosystems, Inc. Transposase compositions, methods of making and methods of screening
CN112236518A (zh) * 2018-02-23 2021-01-15 耶鲁大学 单细胞冻融裂解
CN112272710A (zh) 2018-05-03 2021-01-26 贝克顿迪金森公司 高通量多组学样品分析
WO2020036926A1 (en) 2018-08-17 2020-02-20 Cellecta, Inc. Multiplex preparation of barcoded gene specific dna fragments
ES2992135T3 (es) * 2018-10-01 2024-12-09 Becton Dickinson Co Determinar secuencias de transcripción 5’
WO2020167920A1 (en) 2019-02-14 2020-08-20 Cellular Research, Inc. Hybrid targeted and whole transcriptome amplification
US10633693B1 (en) 2019-04-16 2020-04-28 Celsee Diagnostics, Inc. System and method for leakage control in a particle capture system
AU2020267743B2 (en) 2019-05-07 2023-04-06 Bio-Rad Laboratories, Inc. System and method for automated single cell processing
US11273439B2 (en) 2019-05-07 2022-03-15 Bio-Rad Laboratories, Inc. System and method for target material retrieval from microwells
WO2020251802A1 (en) 2019-06-14 2020-12-17 Bio-Rad Laboratories, Inc. System and method for automated single cell processing and analyses
EP4010494A1 (en) * 2019-08-08 2022-06-15 INSERM (Institut National de la Santé et de la Recherche Médicale) Rna sequencing method for the analysis of b and t cell transcriptome in phenotypically defined b and t cell subsets
WO2021046475A1 (en) * 2019-09-06 2021-03-11 10X Genomics, Inc. Systems and methods for barcoding cells and cell beads
CN114555824A (zh) * 2019-10-11 2022-05-27 布莱克霍克基因组学有限责任公司 使用长读测序鉴定基因组结构变体
GB2589869A (en) * 2019-12-09 2021-06-16 Univ Oxford Innovation Ltd Method for whole genome sequencing of picogram quantities of DNA
US12445148B2 (en) * 2020-01-03 2025-10-14 Koninklijke Philips N.V. System and method for effective compression representation and decompression of diverse tabulated data
WO2021146219A1 (en) 2020-01-13 2021-07-22 Becton, Dickinson And Company Cell capture using du-containing oligonucleotides
WO2021155057A1 (en) 2020-01-29 2021-08-05 Becton, Dickinson And Company Barcoded wells for spatial mapping of single cells through sequencing
WO2021173719A1 (en) 2020-02-25 2021-09-02 Becton, Dickinson And Company Bi-specific probes to enable the use of single-cell samples as single color compensation control
US11504719B2 (en) 2020-03-12 2022-11-22 Bio-Rad Laboratories, Inc. System and method for receiving and delivering a fluid for sample processing
US11661625B2 (en) 2020-05-14 2023-05-30 Becton, Dickinson And Company Primers for immune repertoire profiling
US12157913B2 (en) 2020-06-02 2024-12-03 Becton, Dickinson And Company Oligonucleotides and beads for 5 prime gene expression assay
US11932901B2 (en) 2020-07-13 2024-03-19 Becton, Dickinson And Company Target enrichment using nucleic acid probes for scRNAseq
US20230399693A1 (en) * 2020-11-03 2023-12-14 Act Genomics (Ip) Co., Limited Targeted sequencing method and kit thereof for detecting gene alteration
CN116685850A (zh) 2020-12-15 2023-09-01 贝克顿迪金森公司 单细胞分泌组分析
WO2023037334A1 (en) 2021-09-13 2023-03-16 Ecole Polytechnique Federale De Lausanne (Epfl) System and method for single cell phenotypical profiling and deterministic nanoliter-droplet encapsulation and deterministic droplet consortia assemblies
CN118369438A (zh) 2021-12-10 2024-07-19 伯乐实验室有限公司 用形态可调节功能化颗粒进行样品处理的组合物、方法和系统

Family Cites Families (34)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5449602A (en) 1988-01-13 1995-09-12 Amoco Corporation Template-directed photoligation
US5494810A (en) 1990-05-03 1996-02-27 Cornell Research Foundation, Inc. Thermostable ligase-mediated DNA amplifications system for the detection of genetic disease
EP2332957B1 (en) 1996-02-09 2015-04-08 Cornell Research Foundation, Inc. Detection of nucleic and acid sequence differences using the ligase detection reaction with addressable arrays
EP2369007B1 (en) 1996-05-29 2015-07-29 Cornell Research Foundation, Inc. Detection of nucleic acid sequence differences using coupled ligase detection and polymerase chain reactions
US6312892B1 (en) 1996-07-19 2001-11-06 Cornell Research Foundation, Inc. High fidelity detection of nucleic acid differences by ligase detection reaction
US6770748B2 (en) 1997-03-07 2004-08-03 Takeshi Imanishi Bicyclonucleoside and oligonucleotide analogue
US6794499B2 (en) 1997-09-12 2004-09-21 Exiqon A/S Oligonucleotide analogues
US6027998A (en) 1997-12-17 2000-02-22 Advanced Micro Devices, Inc. Method for fully planarized conductive line for a stack gate
US6506594B1 (en) 1999-03-19 2003-01-14 Cornell Res Foundation Inc Detection of nucleic acid sequence differences using the ligase detection reaction with addressable arrays
US6262490B1 (en) 1999-11-05 2001-07-17 Advanced Semiconductor Engineering, Inc. Substrate strip for use in packaging semiconductor chips
AU2001265121A1 (en) 2000-05-30 2001-12-11 Applera Corporation Methods for detecting target nucleic acids using coupled ligation and amplification
US6605451B1 (en) 2000-06-06 2003-08-12 Xtrana, Inc. Methods and devices for multiplexing amplification reactions
WO2002023163A1 (en) 2000-09-15 2002-03-21 California Institute Of Technology Microfabricated crossflow devices and methods
WO2007044091A2 (en) 2005-06-02 2007-04-19 Fluidigm Corporation Analysis using microfluidic partitioning devices
EP2185285A4 (en) 2007-08-14 2015-08-19 Arcxis Biotechnologies Inc PREPARATION OF POLYMERMIC FLUIDIC BIOCHIPS
CN102015522B (zh) 2008-02-22 2013-07-03 弗卢迪格姆公司 用于微流体器件的集成载体
EP4047367A1 (en) 2008-07-18 2022-08-24 Bio-Rad Laboratories, Inc. Method for detecting target analytes with droplet libraries
EP2326732A4 (en) 2008-08-26 2012-11-14 Fluidigm Corp TEST METHODS FOR INCREASED SURPLUS OF SAMPLES AND / OR TARGETS
SG183029A1 (en) 2009-01-13 2012-08-30 Fluidigm Corp Single-cell nucleic acid analysis
US8450063B2 (en) 2009-01-28 2013-05-28 Fluidigm Corporation Determination of copy number differences by amplification
WO2010111231A1 (en) 2009-03-23 2010-09-30 Raindance Technologies, Inc. Manipulation of microfluidic droplets
EP2414548B1 (en) * 2009-03-30 2015-10-21 Illumina, Inc. Gene expression analysis in single cells
US20100285537A1 (en) 2009-04-02 2010-11-11 Fluidigm Corporation Selective tagging of short nucleic acid fragments and selective protection of target sequences from degradation
SG174617A1 (en) 2009-04-02 2011-10-28 Fluidigm Corp Multi-primer amplification method for barcoding of target nucleic acids
EP2569447A4 (en) 2010-05-14 2013-11-27 Fluidigm Corp ASSAYS FOR THE DETECTION OF GENOTYPES, MUTATIONS OR ANEUPLOIDY
WO2011143659A2 (en) 2010-05-14 2011-11-17 Fluidigm Corporation Nucleic acid isolation methods
SG10201605049QA (en) * 2011-05-20 2016-07-28 Fluidigm Corp Nucleic acid encoding reactions
CN104350374B (zh) 2012-02-29 2018-04-27 富鲁达公司 用于使用微流体的多个单细胞捕获和处理的方法、系统和设备
WO2013177206A2 (en) * 2012-05-21 2013-11-28 Fluidigm Corporation Single-particle analysis of particle populations
WO2014031954A1 (en) * 2012-08-23 2014-02-27 Tufts University Homopolymer mediated nucleic acid amplification
WO2014201273A1 (en) 2013-06-12 2014-12-18 The Broad Institute, Inc. High-throughput rna-seq
GB201317301D0 (en) 2013-09-30 2013-11-13 Linnarsson Sten Method for capturing and encoding nucleic acid from a plurality of single cells
CN107250445A (zh) 2015-02-27 2017-10-13 富鲁达公司 用于高通量研究的单个细胞核酸
CN108603224B (zh) 2015-12-16 2022-06-28 富鲁达公司 高水平多路复用扩增

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