JP2016506733A5 - - Google Patents
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- JP2016506733A5 JP2016506733A5 JP2015556175A JP2015556175A JP2016506733A5 JP 2016506733 A5 JP2016506733 A5 JP 2016506733A5 JP 2015556175 A JP2015556175 A JP 2015556175A JP 2015556175 A JP2015556175 A JP 2015556175A JP 2016506733 A5 JP2016506733 A5 JP 2016506733A5
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- Prior art keywords
- dna
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- pairs
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- 238000000034 method Methods 0.000 claims description 121
- 108020004414 DNA Proteins 0.000 claims description 100
- 102000053602 DNA Human genes 0.000 claims description 51
- 238000000338 in vitro Methods 0.000 claims description 22
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- 108010077544 Chromatin Proteins 0.000 claims description 17
- 210000003483 chromatin Anatomy 0.000 claims description 17
- 230000004568 DNA-binding Effects 0.000 claims description 16
- 238000012163 sequencing technique Methods 0.000 claims description 15
- 239000012634 fragment Substances 0.000 claims description 13
- 238000005562 fading Methods 0.000 claims description 11
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- 108091061960 Naked DNA Proteins 0.000 claims description 4
- 239000000834 fixative Substances 0.000 claims description 4
- 238000012165 high-throughput sequencing Methods 0.000 claims description 4
- 230000000813 microbial effect Effects 0.000 claims description 4
- 102000006947 Histones Human genes 0.000 claims description 2
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- 239000002773 nucleotide Substances 0.000 claims description 2
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- 241000894007 species Species 0.000 claims description 2
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- YBJHBAHKTGYVGT-ZKWXMUAHSA-N (+)-Biotin Chemical group N1C(=O)N[C@@H]2[C@H](CCCCC(=O)O)SC[C@@H]21 YBJHBAHKTGYVGT-ZKWXMUAHSA-N 0.000 claims 6
- 238000002372 labelling Methods 0.000 claims 6
- 230000001717 pathogenic effect Effects 0.000 claims 6
- ZCCUUQDIBDJBTK-UHFFFAOYSA-N psoralen Chemical compound C1=C2OC(=O)C=CC2=CC2=C1OC=C2 ZCCUUQDIBDJBTK-UHFFFAOYSA-N 0.000 claims 6
- VXGRJERITKFWPL-UHFFFAOYSA-N 4',5'-Dihydropsoralen Natural products C1=C2OC(=O)C=CC2=CC2=C1OCC2 VXGRJERITKFWPL-UHFFFAOYSA-N 0.000 claims 3
- 206010059866 Drug resistance Diseases 0.000 claims 3
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- 230000000712 assembly Effects 0.000 claims 1
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- 150000007523 nucleic acids Chemical class 0.000 description 11
- 150000003384 small molecules Chemical class 0.000 description 10
- 102000054766 genetic haplotypes Human genes 0.000 description 9
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Applications Claiming Priority (5)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201361759941P | 2013-02-01 | 2013-02-01 | |
| US61/759,941 | 2013-02-01 | ||
| US201361892355P | 2013-10-17 | 2013-10-17 | |
| US61/892,355 | 2013-10-17 | ||
| PCT/US2014/014184 WO2014121091A1 (en) | 2013-02-01 | 2014-01-31 | Methods for genome assembly and haplotype phasing |
Related Child Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2019002382A Division JP7028807B2 (ja) | 2013-02-01 | 2019-01-10 | ゲノムアセンブリ及びハプロタイプフェージングの方法 |
Publications (3)
| Publication Number | Publication Date |
|---|---|
| JP2016506733A JP2016506733A (ja) | 2016-03-07 |
| JP2016506733A5 true JP2016506733A5 (cg-RX-API-DMAC7.html) | 2017-03-16 |
| JP6466855B2 JP6466855B2 (ja) | 2019-02-06 |
Family
ID=51262991
Family Applications (3)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2015556175A Active JP6466855B2 (ja) | 2013-02-01 | 2014-01-31 | ゲノムアセンブリ及びハプロタイプフェージングの方法 |
| JP2019002382A Active JP7028807B2 (ja) | 2013-02-01 | 2019-01-10 | ゲノムアセンブリ及びハプロタイプフェージングの方法 |
| JP2022022549A Pending JP2022065109A (ja) | 2013-02-01 | 2022-02-17 | ゲノムアセンブリ及びハプロタイプフェージングの方法 |
Family Applications After (2)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2019002382A Active JP7028807B2 (ja) | 2013-02-01 | 2019-01-10 | ゲノムアセンブリ及びハプロタイプフェージングの方法 |
| JP2022022549A Pending JP2022065109A (ja) | 2013-02-01 | 2022-02-17 | ゲノムアセンブリ及びハプロタイプフェージングの方法 |
Country Status (8)
| Country | Link |
|---|---|
| US (3) | US10089437B2 (cg-RX-API-DMAC7.html) |
| EP (2) | EP3885446A1 (cg-RX-API-DMAC7.html) |
| JP (3) | JP6466855B2 (cg-RX-API-DMAC7.html) |
| CN (2) | CN105121661B (cg-RX-API-DMAC7.html) |
| AU (2) | AU2014212152B2 (cg-RX-API-DMAC7.html) |
| CA (2) | CA3209385A1 (cg-RX-API-DMAC7.html) |
| GB (2) | GB2519255B (cg-RX-API-DMAC7.html) |
| WO (1) | WO2014121091A1 (cg-RX-API-DMAC7.html) |
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| US10068054B2 (en) | 2013-01-17 | 2018-09-04 | Edico Genome, Corp. | Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform |
| EP4553839A3 (en) | 2013-01-17 | 2025-07-30 | Illumina, Inc. | Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform |
| US10847251B2 (en) | 2013-01-17 | 2020-11-24 | Illumina, Inc. | Genomic infrastructure for on-site or cloud-based DNA and RNA processing and analysis |
| US9792405B2 (en) | 2013-01-17 | 2017-10-17 | Edico Genome, Corp. | Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform |
| US9679104B2 (en) | 2013-01-17 | 2017-06-13 | Edico Genome, Corp. | Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform |
| US10691775B2 (en) | 2013-01-17 | 2020-06-23 | Edico Genome, Corp. | Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform |
| US9411930B2 (en) | 2013-02-01 | 2016-08-09 | The Regents Of The University Of California | Methods for genome assembly and haplotype phasing |
| CA3209385A1 (en) * | 2013-02-01 | 2014-08-07 | The Regents Of The University Of California | Methods for genome assembly and haplotype phasing |
| AU2014362322B2 (en) * | 2013-12-11 | 2021-05-27 | The Regents For Of The University Of California | Methods for labeling DNA fragments to recontruct physical linkage and phase |
| EP4219710A3 (en) | 2014-08-01 | 2023-08-16 | Dovetail Genomics, LLC | Tagging nucleic acids for sequence assembly |
| SG11201706730XA (en) | 2015-02-17 | 2017-09-28 | Dovetail Genomics Llc | Nucleic acid sequence assembly |
| EP3329491A2 (en) | 2015-03-23 | 2018-06-06 | Edico Genome Corporation | Method and system for genomic visualization |
| GB2554572B (en) * | 2015-03-26 | 2021-06-23 | Dovetail Genomics Llc | Physical linkage preservation in DNA storage |
| WO2016164313A1 (en) * | 2015-04-06 | 2016-10-13 | The Regents Of The University Of California | Methods and compositions for long-range haplotype phasing |
| KR20180096586A (ko) * | 2015-10-19 | 2018-08-29 | 더브테일 제노믹스 엘엘씨 | 게놈 어셈블리, 하플로타입 페이징 및 표적 독립적 핵산 검출을 위한 방법 |
| US20170270245A1 (en) | 2016-01-11 | 2017-09-21 | Edico Genome, Corp. | Bioinformatics systems, apparatuses, and methods for performing secondary and/or tertiary processing |
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| CN105839196B (zh) * | 2016-05-11 | 2018-04-17 | 北京百迈客生物科技有限公司 | 一种真核生物DNA的Hi‑C高通量测序建库方法 |
| SG11201810088SA (en) | 2016-05-13 | 2018-12-28 | Dovetail Genomics Llc | Recovering long-range linkage information from preserved samples |
| CN106055925B (zh) * | 2016-05-24 | 2018-09-18 | 中国水产科学研究院 | 基于转录组双端测序数据组装基因组序列的方法和装置 |
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| CN109997193B (zh) * | 2016-11-10 | 2023-03-14 | 深圳华大生命科学研究院 | 一种对特定群中的亚群进行定量分析的方法 |
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| CN106754868A (zh) * | 2016-11-29 | 2017-05-31 | 武汉菲沙基因信息有限公司 | 一种捕获核基因组内相互作用的dna片段的方法 |
| CN118441026A (zh) * | 2016-12-19 | 2024-08-06 | 生物辐射实验室股份有限公司 | 液滴加标的相邻性保留的标签化dna |
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| KR102035285B1 (ko) * | 2017-05-30 | 2019-10-22 | 단국대학교 산학협력단 | Ｄｎａ 샷건 시퀀싱 또는 ｒｎａ 전사체 어셈블리를 위한 콘티그 프로파일의 업데이트 방법 및 콘티그 형성 방법 |
| CN107704725B (zh) * | 2017-08-11 | 2020-12-01 | 浙江工业大学 | 一种不连续多域蛋白结构组装方法 |
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| JP7576536B2 (ja) | 2018-08-03 | 2024-10-31 | カタログ テクノロジーズ， インコーポレイテッド | 誤り保護とともに核酸に基づくデータを記憶および読むためのシステムおよび方法 |
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