JP2015536661A5 - - Google Patents

Download PDF

Info

Publication number
JP2015536661A5
JP2015536661A5 JP2015544446A JP2015544446A JP2015536661A5 JP 2015536661 A5 JP2015536661 A5 JP 2015536661A5 JP 2015544446 A JP2015544446 A JP 2015544446A JP 2015544446 A JP2015544446 A JP 2015544446A JP 2015536661 A5 JP2015536661 A5 JP 2015536661A5
Authority
JP
Japan
Prior art keywords
target region
region
alternative
sequence
genome
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Granted
Application number
JP2015544446A
Other languages
English (en)
Japanese (ja)
Other versions
JP6240210B2 (ja
JP2015536661A (ja
Filing date
Publication date
Priority claimed from US13/689,314 external-priority patent/US9218450B2/en
Application filed filed Critical
Publication of JP2015536661A publication Critical patent/JP2015536661A/ja
Publication of JP2015536661A5 publication Critical patent/JP2015536661A5/ja
Application granted granted Critical
Publication of JP6240210B2 publication Critical patent/JP6240210B2/ja
Active legal-status Critical Current
Anticipated expiration legal-status Critical

Links

JP2015544446A 2012-11-29 2013-11-27 標的シーケンシングリードの正確かつ迅速なマッピング Active JP6240210B2 (ja)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US13/689,314 2012-11-29
US13/689,314 US9218450B2 (en) 2012-11-29 2012-11-29 Accurate and fast mapping of reads to genome
PCT/EP2013/074799 WO2014083023A1 (en) 2012-11-29 2013-11-27 Accurate and fast mapping of targeted sequencing reads

Publications (3)

Publication Number Publication Date
JP2015536661A JP2015536661A (ja) 2015-12-24
JP2015536661A5 true JP2015536661A5 (enExample) 2017-01-19
JP6240210B2 JP6240210B2 (ja) 2017-11-29

Family

ID=49641777

Family Applications (1)

Application Number Title Priority Date Filing Date
JP2015544446A Active JP6240210B2 (ja) 2012-11-29 2013-11-27 標的シーケンシングリードの正確かつ迅速なマッピング

Country Status (7)

Country Link
US (2) US9218450B2 (enExample)
EP (1) EP2926288B1 (enExample)
JP (1) JP6240210B2 (enExample)
CN (1) CN104937598B (enExample)
CA (1) CA2891731C (enExample)
ES (1) ES2869292T3 (enExample)
WO (1) WO2014083023A1 (enExample)

Families Citing this family (25)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP3907297A1 (en) 2011-04-15 2021-11-10 The Johns Hopkins University Safe sequencing system
US11525163B2 (en) 2012-10-29 2022-12-13 The Johns Hopkins University Papanicolaou test for ovarian and endometrial cancers
CN106462670B (zh) * 2014-05-12 2020-04-10 豪夫迈·罗氏有限公司 超深度测序中的罕见变体召集
CA2974182A1 (en) * 2014-09-03 2016-03-10 Otsuka Pharmaceutical Co., Ltd. Pathology determination assistance device, method, program and storage medium
US20160125130A1 (en) * 2014-11-05 2016-05-05 Agilent Technologies, Inc. Method for assigning target-enriched sequence reads to a genomic location
US9618474B2 (en) 2014-12-18 2017-04-11 Edico Genome, Inc. Graphene FET devices, systems, and methods of using the same for sequencing nucleic acids
US10429342B2 (en) 2014-12-18 2019-10-01 Edico Genome Corporation Chemically-sensitive field effect transistor
US9857328B2 (en) 2014-12-18 2018-01-02 Agilome, Inc. Chemically-sensitive field effect transistors, systems and methods for manufacturing and using the same
US10020300B2 (en) 2014-12-18 2018-07-10 Agilome, Inc. Graphene FET devices, systems, and methods of using the same for sequencing nucleic acids
US9859394B2 (en) 2014-12-18 2018-01-02 Agilome, Inc. Graphene FET devices, systems, and methods of using the same for sequencing nucleic acids
US10006910B2 (en) 2014-12-18 2018-06-26 Agilome, Inc. Chemically-sensitive field effect transistors, systems, and methods for manufacturing and using the same
US20160300013A1 (en) * 2015-04-10 2016-10-13 Agilent Technologies, Inc. METHOD FOR SIMULTANEOUS DETECTION OF GENOME-WIDE COPY NUMBER CHANGES, cnLOH, INDELS, AND GENE MUTATIONS
US10395759B2 (en) 2015-05-18 2019-08-27 Regeneron Pharmaceuticals, Inc. Methods and systems for copy number variant detection
JP6675164B2 (ja) * 2015-07-28 2020-04-01 株式会社理研ジェネシス 変異判定方法、変異判定プログラムおよび記録媒体
US11286531B2 (en) 2015-08-11 2022-03-29 The Johns Hopkins University Assaying ovarian cyst fluid
KR102465122B1 (ko) 2016-02-12 2022-11-09 리제너론 파마슈티칼스 인코포레이티드 비정상적인 핵형을 검출하기 위한 방법 및 시스템
WO2017201081A1 (en) 2016-05-16 2017-11-23 Agilome, Inc. Graphene fet devices, systems, and methods of using the same for sequencing nucleic acids
MX2019000762A (es) * 2016-07-21 2019-10-30 Walmart Apollo Llc Caracterizaciones basadas en vectores de productos e individuos con respecto a la seleccion de articulos para ubicaciones de tiendas.
SG11202001010UA (en) 2017-08-07 2020-03-30 Univ Johns Hopkins Methods and materials for assessing and treating cancer
JP7320345B2 (ja) * 2017-10-27 2023-08-03 シスメックス株式会社 遺伝子解析方法、遺伝子解析装置、遺伝子解析システム、プログラム、および記録媒体
JP7054133B2 (ja) 2017-11-09 2022-04-13 国立研究開発法人国立がん研究センター 配列解析方法、配列解析装置、参照配列の生成方法、参照配列生成装置、プログラム、および記録媒体
TWI695890B (zh) * 2017-12-29 2020-06-11 行動基因生技股份有限公司 序列比對與突變位點分析的方法及系統
CA3170345A1 (en) 2020-02-14 2021-08-19 The Johns Hopkins University Methods and materials for assessing nucleic acids
CN111477274B (zh) * 2020-04-02 2020-11-24 上海之江生物科技股份有限公司 微生物目标片段中特异性区域的识别方法、装置及应用
CN115552535A (zh) * 2020-05-08 2022-12-30 因美纳有限公司 基因组测序和检测技术

Family Cites Families (8)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
UY24389A1 (es) * 1995-12-06 2001-10-25 Karlsruhe Forschzent Composición farmacéutica para el tratamiento de carcinoma de epitelio plano
US7809509B2 (en) 2001-05-08 2010-10-05 Ip Genesis, Inc. Comparative mapping and assembly of nucleic acid sequences
US20030138778A1 (en) * 2001-11-30 2003-07-24 Garner Harold R. Prediction of disease-causing alleles from sequence context
US20040229269A1 (en) 2003-05-15 2004-11-18 Ghazala Hashmi Hybridization-mediated analysis of polymorphisms
JP2007534944A (ja) * 2004-04-23 2007-11-29 オクソニカ・インコーポレーテッド 表面増強分光法活性−複合ナノ粒子
CN1277924C (zh) * 2004-06-25 2006-10-04 湖南西城杂交水稻基因科技有限公司 利用可转化大片段基因组文库发掘野生稻有利基因的方法
CN110872617A (zh) * 2012-09-04 2020-03-10 夸登特健康公司 检测稀有突变和拷贝数变异的系统和方法
US20140066317A1 (en) * 2012-09-04 2014-03-06 Guardant Health, Inc. Systems and methods to detect rare mutations and copy number variation

Similar Documents

Publication Publication Date Title
JP2015536661A5 (enExample)
Sze et al. A comparison between droplet digital and quantitative PCR in the analysis of bacterial 16S load in lung tissue samples from control and COPD GOLD 2
Waller et al. Classification and quantification of bacteriophage taxa in human gut metagenomes
JP2017532633A5 (enExample)
ATE541946T1 (de) Verfahren und system zur bestimmung von genkopiezahlvarianten
Saha et al. Genome-wide analysis of Indian SARS-CoV-2 genomes for the identification of genetic mutation and SNP
CA2934822C (en) Methods and systems for detecting genetic variants
RU2017107750A (ru) Вычислительный анализ биологических данных с применением многообразия и гиперплоскости
BR112018002173B8 (pt) Sistemas e métodos utilizando sensores de resposta magnética para determinar uma característica genética
EP4553840A3 (en) Systems and methods for analyzing nucleic acid
HK1223987A1 (zh) 用序列标签进行大规模生物分子分析
JP2012531211A5 (enExample)
EP3922731A3 (en) Methods and processes for non-invasive assessment of genetic variations
JP2013066474A5 (enExample)
HRP20192226T1 (hr) Kombinirana analiza materinske plazme zasnovana na veličini i broju za detekciju fetalnih subkromosomskih aberacija
MY182940A (en) Pcr primer set for bacterial dna amplification, kit for detecting and/or identifying bacterial species, and method for detecting and/or identifying bacterial species
JP2016523533A5 (enExample)
JP2015231362A5 (enExample)
JP2018518725A5 (enExample)
Téllez-Sosa et al. Using high-throughput sequencing to leverage surveillance of genetic diversity and oseltamivir resistance: a pilot study during the 2009 influenza A (H1N1) pandemic
JP2012120540A5 (ja) 遺伝子発現プロファイルによる胃癌の検出
JP2013510579A5 (enExample)
JP2018528503A5 (enExample)
RU2565554C2 (ru) СПОСОБ ДИФФЕРЕНЦИАЦИИ БИОВАРОВ И ГЕНОВАРИАНТОВ ШТАММОВ Yersinia pestis ОСНОВНОГО ПОДВИДА С ПОМОЩЬЮ ПОЛИМЕРАЗНОЙ ЦЕПНОЙ РЕАКЦИИ
Dabrowski et al. MultiPSQ: a software solution for the analysis of diagnostic n-plexed pyrosequencing reactions