JP2013211043A5 - - Google Patents

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Publication number
JP2013211043A5
JP2013211043A5 JP2013114005A JP2013114005A JP2013211043A5 JP 2013211043 A5 JP2013211043 A5 JP 2013211043A5 JP 2013114005 A JP2013114005 A JP 2013114005A JP 2013114005 A JP2013114005 A JP 2013114005A JP 2013211043 A5 JP2013211043 A5 JP 2013211043A5
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method performed
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JP2013114005A
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Japanese (ja)
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JP5746265B2 (ja
JP2013211043A (ja
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JP2013114005A 2006-02-16 2013-05-30 核酸配列データのプライマー伸長誤差を補正するためのシステムおよび方法 Expired - Fee Related JP5746265B2 (ja)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US77435406P 2006-02-16 2006-02-16
US60/774,354 2006-02-16

Related Parent Applications (1)

Application Number Title Priority Date Filing Date
JP2008555390A Division JP5808515B2 (ja) 2006-02-16 2007-02-15 核酸配列データのプライマー伸長誤差を補正するためのシステムおよび方法

Publications (3)

Publication Number Publication Date
JP2013211043A JP2013211043A (ja) 2013-10-10
JP2013211043A5 true JP2013211043A5 (enExample) 2014-07-24
JP5746265B2 JP5746265B2 (ja) 2015-07-08

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Family Applications (2)

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JP2008555390A Expired - Fee Related JP5808515B2 (ja) 2006-02-16 2007-02-15 核酸配列データのプライマー伸長誤差を補正するためのシステムおよび方法
JP2013114005A Expired - Fee Related JP5746265B2 (ja) 2006-02-16 2013-05-30 核酸配列データのプライマー伸長誤差を補正するためのシステムおよび方法

Family Applications Before (1)

Application Number Title Priority Date Filing Date
JP2008555390A Expired - Fee Related JP5808515B2 (ja) 2006-02-16 2007-02-15 核酸配列データのプライマー伸長誤差を補正するためのシステムおよび方法

Country Status (7)

Country Link
US (2) US8301394B2 (enExample)
EP (2) EP2002367B1 (enExample)
JP (2) JP5808515B2 (enExample)
CN (1) CN101390101B (enExample)
CA (1) CA2637617C (enExample)
ES (1) ES2626620T3 (enExample)
WO (1) WO2007098049A2 (enExample)

Families Citing this family (54)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
AU2004209001B2 (en) 2003-01-29 2007-10-11 454 Life Sciences Corporation Bead emulsion nucleic acid amplification
US8364417B2 (en) * 2007-02-15 2013-01-29 454 Life Sciences Corporation System and method to correct out of phase errors in DNA sequencing data by use of a recursive algorithm
CA2637617C (en) 2006-02-16 2018-09-18 454 Life Sciences Corporation System and method for correcting primer extension errors in nucleic acid sequence data
US8407554B2 (en) * 2009-02-03 2013-03-26 Complete Genomics, Inc. Method and apparatus for quantification of DNA sequencing quality and construction of a characterizable model system using Reed-Solomon codes
TWI439548B (zh) * 2009-12-23 2014-06-01 Ind Tech Res Inst 序列校正方法與序列校正裝置
US9194838B2 (en) 2010-03-03 2015-11-24 Osaka University Method and device for identifying nucleotide, and method and device for determining nucleotide sequence of polynucleotide
US20120035062A1 (en) 2010-06-11 2012-02-09 Life Technologies Corporation Alternative nucleotide flows in sequencing-by-synthesis methods
WO2012047889A2 (en) 2010-10-04 2012-04-12 Genapsys Inc. Systems and methods for automated reusable parallel biological reactions
US9184099B2 (en) 2010-10-04 2015-11-10 The Board Of Trustees Of The Leland Stanford Junior University Biosensor devices, systems and methods therefor
US9399217B2 (en) 2010-10-04 2016-07-26 Genapsys, Inc. Chamber free nanoreactor system
US10273540B2 (en) 2010-10-27 2019-04-30 Life Technologies Corporation Methods and apparatuses for estimating parameters in a predictive model for use in sequencing-by-synthesis
EP2633470B1 (en) * 2010-10-27 2016-10-26 Life Technologies Corporation Predictive model for use in sequencing-by-synthesis
US20130316918A1 (en) * 2010-11-22 2013-11-28 Life Technologies Corporation Model-based residual correction of intensities
EP2659408B1 (en) 2010-12-29 2019-03-27 Life Technologies Corporation Time-warped background signal for sequencing-by-synthesis operations
US20130060482A1 (en) 2010-12-30 2013-03-07 Life Technologies Corporation Methods, systems, and computer readable media for making base calls in nucleic acid sequencing
US10146906B2 (en) 2010-12-30 2018-12-04 Life Technologies Corporation Models for analyzing data from sequencing-by-synthesis operations
US10241075B2 (en) 2010-12-30 2019-03-26 Life Technologies Corporation Methods, systems, and computer readable media for nucleic acid sequencing
EP3878975A1 (en) 2011-04-08 2021-09-15 Life Technologies Corporation Phase-protecting reagent flow orderings for use in sequencing-by-synthesis
US8585973B2 (en) 2011-05-27 2013-11-19 The Board Of Trustees Of The Leland Stanford Junior University Nano-sensor array
EP2714935B1 (en) * 2011-05-27 2017-03-15 Genapsys Inc. Systems and methods for genetic and biological analysis
US9926596B2 (en) 2011-05-27 2018-03-27 Genapsys, Inc. Systems and methods for genetic and biological analysis
US20150087537A1 (en) 2011-08-31 2015-03-26 Life Technologies Corporation Methods, Systems, Computer Readable Media, and Kits for Sample Identification
US10704164B2 (en) 2011-08-31 2020-07-07 Life Technologies Corporation Methods, systems, computer readable media, and kits for sample identification
EP2785868B1 (en) 2011-12-01 2017-04-12 Genapsys Inc. Systems and methods for high efficiency electronic sequencing and detection
US9646132B2 (en) 2012-05-11 2017-05-09 Life Technologies Corporation Models for analyzing data from sequencing-by-synthesis operations
US10192024B2 (en) * 2012-05-18 2019-01-29 454 Life Sciences Corporation System and method for generation and use of optimal nucleotide flow orders
WO2014027580A1 (ja) 2012-08-17 2014-02-20 国立大学法人大阪大学 試料の分析方法
US10329608B2 (en) 2012-10-10 2019-06-25 Life Technologies Corporation Methods, systems, and computer readable media for repeat sequencing
JP6282036B2 (ja) 2012-12-27 2018-02-21 クオンタムバイオシステムズ株式会社 物質の移動速度の制御方法および制御装置
US20140296080A1 (en) 2013-03-14 2014-10-02 Life Technologies Corporation Methods, Systems, and Computer Readable Media for Evaluating Variant Likelihood
US9146248B2 (en) 2013-03-14 2015-09-29 Intelligent Bio-Systems, Inc. Apparatus and methods for purging flow cells in nucleic acid sequencing instruments
US9591268B2 (en) 2013-03-15 2017-03-07 Qiagen Waltham, Inc. Flow cell alignment methods and systems
CN105051214B (zh) 2013-03-15 2018-12-28 吉纳普赛斯股份有限公司 用于生物分析的系统和方法
US9926597B2 (en) 2013-07-26 2018-03-27 Life Technologies Corporation Control nucleic acid sequences for use in sequencing-by-synthesis and methods for designing the same
EP2840148B1 (en) 2013-08-23 2019-04-03 F. Hoffmann-La Roche AG Methods for nucleic acid amplification
EP3047282B1 (en) 2013-09-18 2019-05-15 Quantum Biosystems Inc. Biomolecule sequencing devices, systems and methods
CN105683980B (zh) * 2013-10-04 2018-08-24 生命科技股份有限公司 在使用终止化学物质的测序中建立分阶段效应模型的方法和系统
JP2015077652A (ja) 2013-10-16 2015-04-23 クオンタムバイオシステムズ株式会社 ナノギャップ電極およびその製造方法
CN105874460B (zh) 2013-11-01 2018-10-02 精赛恩公司 识别靶序列的至少一个碱基的方法、可读介质及设备
CN105849284B (zh) * 2013-11-01 2021-08-10 奥基诺公司 序列数据中分离质量等级和测序较长读段的方法和设备
WO2015089238A1 (en) 2013-12-11 2015-06-18 Genapsys, Inc. Systems and methods for biological analysis and computation
US10438811B1 (en) 2014-04-15 2019-10-08 Quantum Biosystems Inc. Methods for forming nano-gap electrodes for use in nanosensors
US9822401B2 (en) 2014-04-18 2017-11-21 Genapsys, Inc. Methods and systems for nucleic acid amplification
US10676787B2 (en) 2014-10-13 2020-06-09 Life Technologies Corporation Methods, systems, and computer-readable media for accelerated base calling
EP3295345B1 (en) 2015-05-14 2023-01-25 Life Technologies Corporation Barcode sequences, and related systems and methods
CN107958138B (zh) * 2016-10-14 2019-06-18 赛纳生物科技(北京)有限公司 一种从高通量dna测序的原始信号中读取序列信息的方法
DK3377653T3 (da) 2015-11-19 2025-12-01 Cygnus Biosciences Beijing Co Ltd Fremgangsmåder til opnåelse og korrektion af biologisk sekvensinformation
ES2877193T3 (es) 2016-04-27 2021-11-16 Quantum Biosystems Inc Sistemas y métodos para la medición y secuenciación de biomoléculas
US10619205B2 (en) 2016-05-06 2020-04-14 Life Technologies Corporation Combinatorial barcode sequences, and related systems and methods
WO2018017884A1 (en) 2016-07-20 2018-01-25 Genapsys, Inc. Systems and methods for nucleic acid sequencing
JP2021500858A (ja) 2017-09-21 2021-01-14 ジナプシス インコーポレイテッド 核酸シーケンシングのためのシステム及び方法
JP2022533801A (ja) 2019-05-03 2022-07-25 ウルティマ ジェノミクス， インコーポレイテッド 合成による高速フォワードシークエンシング
CN114420214B (zh) * 2022-01-28 2026-02-27 赛纳生物科技(北京)有限公司 核酸测序数据的质量评估方法和筛选方法
CN116825189A (zh) * 2023-06-29 2023-09-29 赛纳生物科技(北京)有限公司 一种2+2测序的信号校正方法

Family Cites Families (17)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
GB9620209D0 (en) 1996-09-27 1996-11-13 Cemu Bioteknik Ab Method of sequencing DNA
GB9626815D0 (en) 1996-12-23 1997-02-12 Cemu Bioteknik Ab Method of sequencing DNA
GB9901475D0 (en) 1999-01-22 1999-03-17 Pyrosequencing Ab A method of DNA sequencing
US6274320B1 (en) 1999-09-16 2001-08-14 Curagen Corporation Method of sequencing a nucleic acid
US7211390B2 (en) 1999-09-16 2007-05-01 454 Life Sciences Corporation Method of sequencing a nucleic acid
US7244559B2 (en) 1999-09-16 2007-07-17 454 Life Sciences Corporation Method of sequencing a nucleic acid
US6783934B1 (en) * 2000-05-01 2004-08-31 Cepheid, Inc. Methods for quantitative analysis of nucleic acid amplification reaction
GB0016472D0 (en) * 2000-07-05 2000-08-23 Amersham Pharm Biotech Uk Ltd Sequencing method and apparatus
CA2421221A1 (en) * 2000-09-01 2002-03-07 Fred Hutchinson Cancer Research Center Statistical modeling to analyze large data arrays
US6952651B2 (en) * 2002-06-17 2005-10-04 Intel Corporation Methods and apparatus for nucleic acid sequencing by signal stretching and data integration
US20040197845A1 (en) * 2002-08-30 2004-10-07 Arjang Hassibi Methods and apparatus for pathogen detection, identification and/or quantification
AU2004209001B2 (en) 2003-01-29 2007-10-11 454 Life Sciences Corporation Bead emulsion nucleic acid amplification
US7575865B2 (en) 2003-01-29 2009-08-18 454 Life Sciences Corporation Methods of amplifying and sequencing nucleic acids
GB0324456D0 (en) * 2003-10-20 2003-11-19 Isis Innovation Parallel DNA sequencing methods
EP1725574A4 (en) * 2004-03-04 2008-10-29 Univ British Columbia THROMBOMODULIN (THBD) HAPLOTYPES AS RESULTS INDICATORS FOR PATIENTS
PT1801209E (pt) * 2004-08-24 2011-05-26 Toray Industries Arn gen?mico do v?rus humano modificado da hepatite c com capacidade de replica??o aut?noma
CA2637617C (en) 2006-02-16 2018-09-18 454 Life Sciences Corporation System and method for correcting primer extension errors in nucleic acid sequence data

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