JP2004118819A - 大規模蛋白質相互作用データの効率的視覚化技法 - Google Patents

大規模蛋白質相互作用データの効率的視覚化技法 Download PDF

Info

Publication number
JP2004118819A
JP2004118819A JP2002319839A JP2002319839A JP2004118819A JP 2004118819 A JP2004118819 A JP 2004118819A JP 2002319839 A JP2002319839 A JP 2002319839A JP 2002319839 A JP2002319839 A JP 2002319839A JP 2004118819 A JP2004118819 A JP 2004118819A
Authority
JP
Japan
Prior art keywords
protein interaction
interaction data
graph
nodes
node
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Pending
Application number
JP2002319839A
Other languages
English (en)
Japanese (ja)
Inventor
Kyung Sook Han
ハン　キュン　ソーク
Byong-Hyon Ju
ジュ　ビョン　ヒョン
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Inha University
Original Assignee
Inha University
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Inha University filed Critical Inha University
Publication of JP2004118819A publication Critical patent/JP2004118819A/ja
Pending legal-status Critical Current

Links

Images

Classifications

    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06T—IMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T17/00—Three-dimensional [3D] modelling for computer graphics
    • C—CHEMISTRY; METALLURGY
    • C40—COMBINATORIAL TECHNOLOGY
    • C40B—COMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
    • C40B30/00—Methods of screening libraries
    • C40B30/04—Methods of screening libraries by measuring the ability to specifically bind a target molecule, e.g. antibody-antigen binding, receptor-ligand binding
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/68—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids
    • G01N33/6803—General methods of protein analysis not limited to specific proteins or families of proteins
    • G01N33/6845—Methods of identifying protein-protein interactions in protein mixtures
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B45/00—ICT specially adapted for bioinformatics-related data visualisation, e.g. displaying of maps or networks

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Molecular Biology (AREA)
  • Chemical & Material Sciences (AREA)
  • General Health & Medical Sciences (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biotechnology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Immunology (AREA)
  • Biophysics (AREA)
  • Theoretical Computer Science (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Organic Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Biomedical Technology (AREA)
  • Medicinal Chemistry (AREA)
  • Medical Informatics (AREA)
  • Hematology (AREA)
  • Evolutionary Biology (AREA)
  • Urology & Nephrology (AREA)
  • Biochemistry (AREA)
  • Analytical Chemistry (AREA)
  • General Physics & Mathematics (AREA)
  • Pathology (AREA)
  • Food Science & Technology (AREA)
  • Data Mining & Analysis (AREA)
  • Microbiology (AREA)
  • Cell Biology (AREA)
  • General Chemical & Material Sciences (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Genetics & Genomics (AREA)
  • Computer Graphics (AREA)
  • Geometry (AREA)
  • Software Systems (AREA)
  • Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
  • Management, Administration, Business Operations System, And Electronic Commerce (AREA)
JP2002319839A 2002-09-23 2002-11-01 大規模蛋白質相互作用データの効率的視覚化技法 Pending JP2004118819A (ja)

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
KR10-2002-0057604A KR100470977B1 (ko) 2002-09-23 2002-09-23 대규모 단백질 상호작용 데이터의 효율적 시각화 기법

Related Child Applications (1)

Application Number Title Priority Date Filing Date
JP2005099514A Division JP2005322216A (ja) 2002-09-23 2005-03-30 大規模蛋白質相互作用データの効率的視覚化技法

Publications (1)

Publication Number Publication Date
JP2004118819A true JP2004118819A (ja) 2004-04-15

Family

ID=31987513

Family Applications (2)

Application Number Title Priority Date Filing Date
JP2002319839A Pending JP2004118819A (ja) 2002-09-23 2002-11-01 大規模蛋白質相互作用データの効率的視覚化技法
JP2005099514A Pending JP2005322216A (ja) 2002-09-23 2005-03-30 大規模蛋白質相互作用データの効率的視覚化技法

Family Applications After (1)

Application Number Title Priority Date Filing Date
JP2005099514A Pending JP2005322216A (ja) 2002-09-23 2005-03-30 大規模蛋白質相互作用データの効率的視覚化技法

Country Status (3)

Country Link
US (1) US7280921B2 (https=)
JP (2) JP2004118819A (https=)
KR (1) KR100470977B1 (https=)

Families Citing this family (15)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2004069417A (ja) * 2002-08-05 2004-03-04 Hitachi Ltd ノード座標の決定方法、ネットワーク表示方法及びスクリーニング方法
KR100491666B1 (ko) * 2002-09-23 2005-05-27 학교법인 인하학원 단백질 상호작용 네트웍의 분할 시각화 기법
EP1510939A1 (en) * 2003-08-29 2005-03-02 Sap Ag A method of providing a visualisation graph on a computer and a computer for providing a visualisation graph
EP1510941A1 (en) * 2003-08-29 2005-03-02 Sap Ag A method of providing a visualisation graph on a computer and a computer for providing a visualisation graph
EP1510938B1 (en) * 2003-08-29 2014-06-18 Sap Ag A method of providing a visualisation graph on a computer and a computer for providing a visualisation graph
EP1510940A1 (en) * 2003-08-29 2005-03-02 Sap Ag A method of providing a visualisation graph on a computer and a computer for providing a visualisation graph
US7523117B2 (en) * 2005-05-04 2009-04-21 West Virginia University Research Corporation Method for data clustering and classification by a graph theory model—network partition into high density subgraphs
KR100833988B1 (ko) * 2006-10-12 2008-05-30 포항공과대학교 산학협력단 다극자 변형 표현을 이용한 단백질 분자 모양의 표현 방법
KR100970968B1 (ko) * 2008-10-21 2010-07-21 건국대학교 산학협력단 거대 분자의 렌더링 방법 및 장치
US10289802B2 (en) 2010-12-27 2019-05-14 The Board Of Trustees Of The Leland Stanford Junior University Spanning-tree progression analysis of density-normalized events (SPADE)
CN102750460B (zh) * 2012-05-31 2014-12-10 常州工学院 分层简化大规模图数据的运算方法
CN103390087B (zh) * 2013-07-31 2016-03-09 浙江大学 一种针对大规模几何场景的交互绘制方法
US20160232279A1 (en) * 2013-09-23 2016-08-11 Northeastern University System and Methods for Disease Module Detection
JP7404648B2 (ja) * 2019-04-25 2023-12-26 富士通株式会社 治療薬提示方法、治療薬提示装置、及び治療薬提示プログラム
CN111061921B (zh) * 2019-12-04 2020-10-30 智器云南京信息科技有限公司 一种图像布局实现方法、系统、终端设备和存储介质

Family Cites Families (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5265030A (en) * 1990-04-24 1993-11-23 Scripps Clinic And Research Foundation System and method for determining three-dimensional structures of proteins
US5642292A (en) * 1992-03-27 1997-06-24 Akiko Itai Methods for searching stable docking models of biopolymer-ligand molecule complex
JPH08263535A (ja) * 1995-03-23 1996-10-11 Fujitsu Ltd 立体構造データ管理方法
US20020107643A1 (en) * 1999-01-22 2002-08-08 Wayne A. Hendrickson Process for pan-genomic determination of macromolecular atomic structures

Also Published As

Publication number Publication date
KR20040026227A (ko) 2004-03-30
KR100470977B1 (ko) 2005-03-10
US20040059521A1 (en) 2004-03-25
US7280921B2 (en) 2007-10-09
JP2005322216A (ja) 2005-11-17

Similar Documents

Publication Publication Date Title
Tominski et al. CGV—An interactive graph visualization system
Perer et al. Balancing systematic and flexible exploration of social networks
JP4122234B2 (ja) データ分析システムおよびデータ分析方法
JP2004118819A (ja) 大規模蛋白質相互作用データの効率的視覚化技法
US9591028B2 (en) Visualization and analysis of complex security information
Dwyer et al. Exploration of networks using overview+ detail with constraint-based cooperative layout
JP7030211B2 (ja) 大規模生成的設計データセットを可視化および探索するための技法
Keshavarzi et al. V-dream: Immersive exploration of generative design solution space
Ma et al. A graph-based interface for visualanalytics of 3D streamlines and pathlines
Sun et al. Application of mathematical optimization in data visualization and visual analytics: A survey
Krommyda et al. IVLG: Interactive visualization of large graphs
JP2004118818A (ja) 蛋白質相互作用ネットワークの分割視覚化技法
Steed et al. Web-based visual analytics for extreme scale climate science
Liarou et al. dbTouch in action database kernels for touch-based data exploration
CN113064910A (zh) 一种反应式气动数据多维分析平台
Kerracher et al. Visual Techniques to Support Exploratory Analysis of Temporal Graph Data.
CN113867850A (zh) 数据处理方法、装置、设备和存储介质
Lin et al. The neuron navigator: Exploring the information pathway through the neural maze
Su et al. 3D geometric constraint analysis and its application on the spatial assembly sequence planning
Paradies et al. GraphVista: Interactive exploration of large graphs
Wu et al. Towards integrated and efficient scientific sensor data processing: a database approach
Eichner et al. Multi-display visual analysis: Model, interface, and layout computation
JP4521008B2 (ja) 画像検索システム
CN1558343A (zh) 三维资源浏览与管理器及其方法
Hägele et al. Visual analytics for nonlinear programming in robot motion planning

Legal Events

Date Code Title Description
A131 Notification of reasons for refusal

Free format text: JAPANESE INTERMEDIATE CODE: A131

Effective date: 20040316

A521 Request for written amendment filed

Free format text: JAPANESE INTERMEDIATE CODE: A523

Effective date: 20040616

A02 Decision of refusal

Free format text: JAPANESE INTERMEDIATE CODE: A02

Effective date: 20041130