KR100470977B1 - 대규모 단백질 상호작용 데이터의 효율적 시각화 기법 - Google Patents

대규모 단백질 상호작용 데이터의 효율적 시각화 기법 Download PDF

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KR100470977B1
KR100470977B1 KR10-2002-0057604A KR20020057604A KR100470977B1 KR 100470977 B1 KR100470977 B1 KR 100470977B1 KR 20020057604 A KR20020057604 A KR 20020057604A KR 100470977 B1 KR100470977 B1 KR 100470977B1
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South Korea
Prior art keywords
protein interaction
nodes
interaction data
graph
protein
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Korean (ko)
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KR20040026227A (ko
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한경숙
주병현
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학교법인 인하학원
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Priority to KR10-2002-0057604A priority Critical patent/KR100470977B1/ko
Priority to JP2002319839A priority patent/JP2004118819A/ja
Priority to US10/290,432 priority patent/US7280921B2/en
Publication of KR20040026227A publication Critical patent/KR20040026227A/ko
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Priority to JP2005099514A priority patent/JP2005322216A/ja
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Expired - Lifetime legal-status Critical Current

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    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06T—IMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T17/00—Three-dimensional [3D] modelling for computer graphics
    • C—CHEMISTRY; METALLURGY
    • C40—COMBINATORIAL TECHNOLOGY
    • C40B—COMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
    • C40B30/00—Methods of screening libraries
    • C40B30/04—Methods of screening libraries by measuring the ability to specifically bind a target molecule, e.g. antibody-antigen binding, receptor-ligand binding
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/68—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids
    • G01N33/6803—General methods of protein analysis not limited to specific proteins or families of proteins
    • G01N33/6845—Methods of identifying protein-protein interactions in protein mixtures
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B45/00—ICT specially adapted for bioinformatics-related data visualisation, e.g. displaying of maps or networks

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  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Molecular Biology (AREA)
  • Chemical & Material Sciences (AREA)
  • General Health & Medical Sciences (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biotechnology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Immunology (AREA)
  • Biophysics (AREA)
  • Theoretical Computer Science (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Organic Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Biomedical Technology (AREA)
  • Medicinal Chemistry (AREA)
  • Medical Informatics (AREA)
  • Hematology (AREA)
  • Evolutionary Biology (AREA)
  • Urology & Nephrology (AREA)
  • Biochemistry (AREA)
  • Analytical Chemistry (AREA)
  • General Physics & Mathematics (AREA)
  • Pathology (AREA)
  • Food Science & Technology (AREA)
  • Data Mining & Analysis (AREA)
  • Microbiology (AREA)
  • Cell Biology (AREA)
  • General Chemical & Material Sciences (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Genetics & Genomics (AREA)
  • Computer Graphics (AREA)
  • Geometry (AREA)
  • Software Systems (AREA)
  • Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
  • Management, Administration, Business Operations System, And Electronic Commerce (AREA)
KR10-2002-0057604A 2002-09-23 2002-09-23 대규모 단백질 상호작용 데이터의 효율적 시각화 기법 Expired - Lifetime KR100470977B1 (ko)

Priority Applications (4)

Application Number Priority Date Filing Date Title
KR10-2002-0057604A KR100470977B1 (ko) 2002-09-23 2002-09-23 대규모 단백질 상호작용 데이터의 효율적 시각화 기법
JP2002319839A JP2004118819A (ja) 2002-09-23 2002-11-01 大規模蛋白質相互作用データの効率的視覚化技法
US10/290,432 US7280921B2 (en) 2002-09-23 2002-11-07 Method for visualizing large-scale protein interaction data
JP2005099514A JP2005322216A (ja) 2002-09-23 2005-03-30 大規模蛋白質相互作用データの効率的視覚化技法

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
KR10-2002-0057604A KR100470977B1 (ko) 2002-09-23 2002-09-23 대규모 단백질 상호작용 데이터의 효율적 시각화 기법

Publications (2)

Publication Number Publication Date
KR20040026227A KR20040026227A (ko) 2004-03-30
KR100470977B1 true KR100470977B1 (ko) 2005-03-10

Family

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Application Number Title Priority Date Filing Date
KR10-2002-0057604A Expired - Lifetime KR100470977B1 (ko) 2002-09-23 2002-09-23 대규모 단백질 상호작용 데이터의 효율적 시각화 기법

Country Status (3)

Country Link
US (1) US7280921B2 (https=)
JP (2) JP2004118819A (https=)
KR (1) KR100470977B1 (https=)

Families Citing this family (15)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2004069417A (ja) * 2002-08-05 2004-03-04 Hitachi Ltd ノード座標の決定方法、ネットワーク表示方法及びスクリーニング方法
KR100491666B1 (ko) * 2002-09-23 2005-05-27 학교법인 인하학원 단백질 상호작용 네트웍의 분할 시각화 기법
EP1510939A1 (en) * 2003-08-29 2005-03-02 Sap Ag A method of providing a visualisation graph on a computer and a computer for providing a visualisation graph
EP1510941A1 (en) * 2003-08-29 2005-03-02 Sap Ag A method of providing a visualisation graph on a computer and a computer for providing a visualisation graph
EP1510938B1 (en) * 2003-08-29 2014-06-18 Sap Ag A method of providing a visualisation graph on a computer and a computer for providing a visualisation graph
EP1510940A1 (en) * 2003-08-29 2005-03-02 Sap Ag A method of providing a visualisation graph on a computer and a computer for providing a visualisation graph
US7523117B2 (en) * 2005-05-04 2009-04-21 West Virginia University Research Corporation Method for data clustering and classification by a graph theory model—network partition into high density subgraphs
KR100833988B1 (ko) * 2006-10-12 2008-05-30 포항공과대학교 산학협력단 다극자 변형 표현을 이용한 단백질 분자 모양의 표현 방법
KR100970968B1 (ko) * 2008-10-21 2010-07-21 건국대학교 산학협력단 거대 분자의 렌더링 방법 및 장치
US10289802B2 (en) 2010-12-27 2019-05-14 The Board Of Trustees Of The Leland Stanford Junior University Spanning-tree progression analysis of density-normalized events (SPADE)
CN102750460B (zh) * 2012-05-31 2014-12-10 常州工学院 分层简化大规模图数据的运算方法
CN103390087B (zh) * 2013-07-31 2016-03-09 浙江大学 一种针对大规模几何场景的交互绘制方法
US20160232279A1 (en) * 2013-09-23 2016-08-11 Northeastern University System and Methods for Disease Module Detection
JP7404648B2 (ja) * 2019-04-25 2023-12-26 富士通株式会社 治療薬提示方法、治療薬提示装置、及び治療薬提示プログラム
CN111061921B (zh) * 2019-12-04 2020-10-30 智器云南京信息科技有限公司 一种图像布局实现方法、系统、终端设备和存储介质

Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5265030A (en) * 1990-04-24 1993-11-23 Scripps Clinic And Research Foundation System and method for determining three-dimensional structures of proteins
JPH08263535A (ja) * 1995-03-23 1996-10-11 Fujitsu Ltd 立体構造データ管理方法
US5642292A (en) * 1992-03-27 1997-06-24 Akiko Itai Methods for searching stable docking models of biopolymer-ligand molecule complex
KR20010108116A (ko) * 1999-01-22 2001-12-07 추후보정 거대분자의 원자 구조의 전-게놈을 측정하기 위한 방법

Patent Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5265030A (en) * 1990-04-24 1993-11-23 Scripps Clinic And Research Foundation System and method for determining three-dimensional structures of proteins
US5642292A (en) * 1992-03-27 1997-06-24 Akiko Itai Methods for searching stable docking models of biopolymer-ligand molecule complex
JPH08263535A (ja) * 1995-03-23 1996-10-11 Fujitsu Ltd 立体構造データ管理方法
KR20010108116A (ko) * 1999-01-22 2001-12-07 추후보정 거대분자의 원자 구조의 전-게놈을 측정하기 위한 방법

Also Published As

Publication number Publication date
KR20040026227A (ko) 2004-03-30
US20040059521A1 (en) 2004-03-25
US7280921B2 (en) 2007-10-09
JP2004118819A (ja) 2004-04-15
JP2005322216A (ja) 2005-11-17

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