EP4741513A2 - Verfahren und zusammensetzungen zur in-situ-synchronisierung von reaktionen - Google Patents

Verfahren und zusammensetzungen zur in-situ-synchronisierung von reaktionen

Info

Publication number
EP4741513A2
EP4741513A2 EP26155985.0A EP26155985A EP4741513A2 EP 4741513 A2 EP4741513 A2 EP 4741513A2 EP 26155985 A EP26155985 A EP 26155985A EP 4741513 A2 EP4741513 A2 EP 4741513A2
Authority
EP
European Patent Office
Prior art keywords
probe
nucleic acid
polymerase
sample
sequence
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Pending
Application number
EP26155985.0A
Other languages
English (en)
French (fr)
Inventor
Jorge Iván HERNÁNDEZ NEUTA
Malte KÜHNEMUND
Patrick J. Marks
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
10X Genomics Inc
Original Assignee
10X Genomics Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by 10X Genomics Inc filed Critical 10X Genomics Inc
Publication of EP4741513A2 publication Critical patent/EP4741513A2/de
Pending legal-status Critical Current

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions
    • C12Q1/6853—Nucleic acid amplification reactions using modified primers or templates
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/53—Immunoassay; Biospecific binding assay; Materials therefor
    • G01N33/5308—Immunoassay; Biospecific binding assay; Materials therefor for analytes not provided for elsewhere, e.g. nucleic acids, uric acid, worms, mites
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6841—In situ hybridisation
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Organic Chemistry (AREA)
  • Engineering & Computer Science (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Wood Science & Technology (AREA)
  • Zoology (AREA)
  • Molecular Biology (AREA)
  • Immunology (AREA)
  • Analytical Chemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • Biochemistry (AREA)
  • Physics & Mathematics (AREA)
  • Microbiology (AREA)
  • Biotechnology (AREA)
  • Genetics & Genomics (AREA)
  • General Engineering & Computer Science (AREA)
  • Biophysics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Hematology (AREA)
  • Urology & Nephrology (AREA)
  • Biomedical Technology (AREA)
  • Food Science & Technology (AREA)
  • Cell Biology (AREA)
  • Tropical Medicine & Parasitology (AREA)
  • Medicinal Chemistry (AREA)
  • General Physics & Mathematics (AREA)
  • Pathology (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
EP26155985.0A 2021-07-30 2022-07-29 Verfahren und zusammensetzungen zur in-situ-synchronisierung von reaktionen Pending EP4741513A2 (de)

Applications Claiming Priority (4)

Application Number Priority Date Filing Date Title
US202163227830P 2021-07-30 2021-07-30
EP24186285.3A EP4450640B1 (de) 2021-07-30 2022-07-29 Verfahren und zusammensetzungen zur in-situ-synchronisierung von reaktionen
PCT/US2022/038915 WO2023009842A1 (en) 2021-07-30 2022-07-29 Methods and compositions for synchronizing reactions in situ
EP22757777.2A EP4326900B1 (de) 2021-07-30 2022-07-29 Verfahren und zusammensetzungen zur in-situ-synchronisierung von reaktionen

Related Parent Applications (3)

Application Number Title Priority Date Filing Date
EP22757777.2A Division EP4326900B1 (de) 2021-07-30 2022-07-29 Verfahren und zusammensetzungen zur in-situ-synchronisierung von reaktionen
EP24186285.3A Division-Into EP4450640B1 (de) 2021-07-30 2022-07-29 Verfahren und zusammensetzungen zur in-situ-synchronisierung von reaktionen
EP24186285.3A Division EP4450640B1 (de) 2021-07-30 2022-07-29 Verfahren und zusammensetzungen zur in-situ-synchronisierung von reaktionen

Publications (1)

Publication Number Publication Date
EP4741513A2 true EP4741513A2 (de) 2026-05-13

Family

ID=83004727

Family Applications (3)

Application Number Title Priority Date Filing Date
EP22757777.2A Active EP4326900B1 (de) 2021-07-30 2022-07-29 Verfahren und zusammensetzungen zur in-situ-synchronisierung von reaktionen
EP26155985.0A Pending EP4741513A2 (de) 2021-07-30 2022-07-29 Verfahren und zusammensetzungen zur in-situ-synchronisierung von reaktionen
EP24186285.3A Active EP4450640B1 (de) 2021-07-30 2022-07-29 Verfahren und zusammensetzungen zur in-situ-synchronisierung von reaktionen

Family Applications Before (1)

Application Number Title Priority Date Filing Date
EP22757777.2A Active EP4326900B1 (de) 2021-07-30 2022-07-29 Verfahren und zusammensetzungen zur in-situ-synchronisierung von reaktionen

Family Applications After (1)

Application Number Title Priority Date Filing Date
EP24186285.3A Active EP4450640B1 (de) 2021-07-30 2022-07-29 Verfahren und zusammensetzungen zur in-situ-synchronisierung von reaktionen

Country Status (7)

Country Link
US (2) US12360105B2 (de)
EP (3) EP4326900B1 (de)
CN (1) CN117730161B (de)
AU (2) AU2022317053B2 (de)
CA (1) CA3224093A1 (de)
ES (1) ES2988400T3 (de)
WO (1) WO2023009842A1 (de)

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CA3078158A1 (en) 2017-10-06 2019-04-11 Cartana Ab Rna templated ligation
GB201919032D0 (en) 2019-12-20 2020-02-05 Cartana Ab Method of detecting an analyte
US12209273B2 (en) 2020-06-12 2025-01-28 10X Genomics, Inc. Nucleic acid assays using click chemistry bioconjugation
US12297499B2 (en) 2020-08-17 2025-05-13 10X Genomics, Inc. Multicomponent nucleic acid probes for sample analysis
US12509717B2 (en) 2020-12-11 2025-12-30 10X Genomics, Inc. Methods and compositions for multimodal in situ analysis
US12275984B2 (en) 2021-03-02 2025-04-15 10X Genomics, Inc. Sequential hybridization and quenching
CA3224093A1 (en) 2021-07-30 2023-02-02 Jorge Ivan Hernandez Neuta Methods and compositions for synchronizing reactions in situ
US12529096B2 (en) 2021-08-03 2026-01-20 10X Genomics, Inc. Stabilization and/or compaction of nucleic acid structures
WO2023015192A1 (en) 2021-08-03 2023-02-09 10X Genomics, Inc. Nucleic acid concatemers and methods for stabilizing and/or compacting the same
WO2023023484A1 (en) 2021-08-16 2023-02-23 10X Genomics, Inc. Probes comprising a split barcode region and methods of use
WO2023172915A1 (en) 2022-03-08 2023-09-14 10X Genomics, Inc. In situ code design methods for minimizing optical crowding
AU2023243205A1 (en) * 2022-04-01 2024-09-19 10X Genomics, Inc. Compositions and methods for targeted masking of autofluorescence
US12559791B2 (en) 2022-05-06 2026-02-24 10X Genomics, Inc. Methods and compositions for in situ analysis of V(D)J sequences
WO2023220300A1 (en) 2022-05-11 2023-11-16 10X Genomics, Inc. Compositions and methods for in situ sequencing
EP4540607A1 (de) 2022-06-17 2025-04-23 10X Genomics, Inc. Katalytische entvernetzung von proben zur in-situ-analyse
WO2025029831A1 (en) 2023-07-31 2025-02-06 10X Genomics, Inc. Methods and systems for targeted rna cleavage and target rna-primed rolling circle amplification
CN119040442B (zh) * 2024-10-31 2025-01-21 北京百力格生物科技有限公司 一种pcr扩增方法及其试剂盒
WO2026096758A1 (en) * 2024-11-01 2026-05-07 10X Genomics, Inc. Methods and compositions for amplification reactions in situ
CN119530350B (zh) * 2024-11-28 2025-09-26 浙江大学 一种可实现细胞内目标核酸特定修饰可视化的原位成像方法

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