EP3063301A4 - Méthodes de séquençage génomique de nouvelle génération - Google Patents

Méthodes de séquençage génomique de nouvelle génération Download PDF

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Publication number
EP3063301A4
EP3063301A4 EP14856946.0A EP14856946A EP3063301A4 EP 3063301 A4 EP3063301 A4 EP 3063301A4 EP 14856946 A EP14856946 A EP 14856946A EP 3063301 A4 EP3063301 A4 EP 3063301A4
Authority
EP
European Patent Office
Prior art keywords
next generation
sequencing methods
genomic sequencing
generation genomic
methods
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Withdrawn
Application number
EP14856946.0A
Other languages
German (de)
English (en)
Other versions
EP3063301A1 (fr
Inventor
Luke T. Daum
Gerald W. Fischer
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Longhorn Vaccines and Diagnostics LLC
Original Assignee
Longhorn Vaccines and Diagnostics LLC
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Longhorn Vaccines and Diagnostics LLC filed Critical Longhorn Vaccines and Diagnostics LLC
Publication of EP3063301A1 publication Critical patent/EP3063301A1/fr
Publication of EP3063301A4 publication Critical patent/EP3063301A4/fr
Withdrawn legal-status Critical Current

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/70—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving virus or bacteriophage
    • C12Q1/701—Specific hybridization probes
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/6893—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for protozoa
EP14856946.0A 2013-10-29 2014-10-29 Méthodes de séquençage génomique de nouvelle génération Withdrawn EP3063301A4 (fr)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US201361897015P 2013-10-29 2013-10-29
PCT/US2014/062889 WO2015066174A1 (fr) 2013-10-29 2014-10-29 Méthodes de séquençage génomique de nouvelle génération

Publications (2)

Publication Number Publication Date
EP3063301A1 EP3063301A1 (fr) 2016-09-07
EP3063301A4 true EP3063301A4 (fr) 2017-07-19

Family

ID=53005068

Family Applications (1)

Application Number Title Priority Date Filing Date
EP14856946.0A Withdrawn EP3063301A4 (fr) 2013-10-29 2014-10-29 Méthodes de séquençage génomique de nouvelle génération

Country Status (5)

Country Link
EP (1) EP3063301A4 (fr)
CN (1) CN106170560A (fr)
AU (1) AU2014342414B2 (fr)
CA (1) CA2929108A1 (fr)
WO (1) WO2015066174A1 (fr)

Families Citing this family (23)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US11041216B2 (en) 2007-10-01 2021-06-22 Longhorn Vaccines And Diagnostics, Llc Compositions and methods for detecting and quantifying nucleic acid sequences in blood samples
TWI805996B (zh) 2013-08-05 2023-06-21 美商扭轉生物科技有限公司 重新合成之基因庫
US9981239B2 (en) 2015-04-21 2018-05-29 Twist Bioscience Corporation Devices and methods for oligonucleic acid library synthesis
US10844373B2 (en) 2015-09-18 2020-11-24 Twist Bioscience Corporation Oligonucleic acid variant libraries and synthesis thereof
KR20180058772A (ko) 2015-09-22 2018-06-01 트위스트 바이오사이언스 코포레이션 핵산 합성을 위한 가요성 기판
WO2017091809A1 (fr) * 2015-11-25 2017-06-01 Longhorn Vaccines And Diagnostics, Llc Compositions et procédés de détection et de quantification de séquences d'acides nucléiques dans des échantillons sanguins
CN105950726A (zh) * 2016-05-16 2016-09-21 杭州市疾病预防控制中心 结核分枝杆菌吡嗪酰胺分子药敏的检测方法
CA3034769A1 (fr) 2016-08-22 2018-03-01 Twist Bioscience Corporation Banques d'acides nucleiques synthetises de novo
US10417457B2 (en) 2016-09-21 2019-09-17 Twist Bioscience Corporation Nucleic acid based data storage
AU2017363204B2 (en) 2016-11-18 2022-12-08 Twist Bioscience Corporation Polynucleotide libraries having controlled stoichiometry and synthesis thereof
EP3586255A4 (fr) 2017-02-22 2021-03-31 Twist Bioscience Corporation Stockage de données reposant sur un acide nucléique
CN110913865A (zh) 2017-03-15 2020-03-24 特韦斯特生物科学公司 免疫突触的变体文库及其合成
SG11201912057RA (en) 2017-06-12 2020-01-30 Twist Bioscience Corp Methods for seamless nucleic acid assembly
WO2018231864A1 (fr) 2017-06-12 2018-12-20 Twist Bioscience Corporation Méthodes d'assemblage d'acides nucléiques continus
CN111566125A (zh) 2017-09-11 2020-08-21 特韦斯特生物科学公司 Gpcr结合蛋白及其合成
US10894242B2 (en) 2017-10-20 2021-01-19 Twist Bioscience Corporation Heated nanowells for polynucleotide synthesis
KR20200106067A (ko) 2018-01-04 2020-09-10 트위스트 바이오사이언스 코포레이션 Dna 기반 디지털 정보 저장
KR20210003120A (ko) * 2018-04-20 2021-01-11 롱혼 백신즈 앤드 다이어그나스틱스, 엘엘씨 신속한 미생물 내성 검출 방법
WO2019222706A1 (fr) 2018-05-18 2019-11-21 Twist Bioscience Corporation Polynucléotides, réactifs, et procédés d'hybridation d'acides nucléiques
CN113785057A (zh) 2019-02-26 2021-12-10 特韦斯特生物科学公司 用于抗体优化的变异核酸文库
US11332738B2 (en) 2019-06-21 2022-05-17 Twist Bioscience Corporation Barcode-based nucleic acid sequence assembly
CN112779343A (zh) * 2019-11-07 2021-05-11 杭州迪安医学检验中心有限公司 一种病原微生物药敏检测方法
CN112410406A (zh) * 2020-11-23 2021-02-26 深圳基因家科技有限公司 一种确定文库扩增循环数的方法

Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20110281754A1 (en) * 2006-09-12 2011-11-17 Longhorn Vaccines & Diagnostics, Llc Compositions and methods for detecting, identifying and quantitating mycobacterial-specific nucleic acids
CN102250924A (zh) * 2010-05-17 2011-11-23 中国疾病预防控制中心病毒病预防控制所 盖塔病毒全基因组序列、扩增方法及引物
WO2013022961A1 (fr) * 2011-08-08 2013-02-14 3The Broad Institute Compositions et procédés pour la co-amplification de sous-séquences d'une séquence de fragment d'acide nucléique
WO2013169998A1 (fr) * 2012-05-09 2013-11-14 Longhorn Vaccines And Diagnostics, Llc Séquençage génomique ion torrent™

Family Cites Families (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20090215050A1 (en) * 2008-02-22 2009-08-27 Robert Delmar Jenison Systems and methods for point-of-care amplification and detection of polynucleotides
WO2012037531A1 (fr) * 2010-09-16 2012-03-22 Gen-Probe Incorporated Sondes de capture immobilisables par l'intermédiaire d'une queue nucléotidique l

Patent Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20110281754A1 (en) * 2006-09-12 2011-11-17 Longhorn Vaccines & Diagnostics, Llc Compositions and methods for detecting, identifying and quantitating mycobacterial-specific nucleic acids
CN102250924A (zh) * 2010-05-17 2011-11-23 中国疾病预防控制中心病毒病预防控制所 盖塔病毒全基因组序列、扩增方法及引物
WO2013022961A1 (fr) * 2011-08-08 2013-02-14 3The Broad Institute Compositions et procédés pour la co-amplification de sous-séquences d'une séquence de fragment d'acide nucléique
WO2013169998A1 (fr) * 2012-05-09 2013-11-14 Longhorn Vaccines And Diagnostics, Llc Séquençage génomique ion torrent™

Non-Patent Citations (4)

* Cited by examiner, † Cited by third party
Title
DAUM L T ET AL: "Genetic analysis of Mycobacterium tuberculosis drug-resistance genes from samples shipped in PrimeStore MTM and sequenced using the next-generation Ion Torrent", INTERNET CITATION, 4 May 2012 (2012-05-04), pages 1, XP002741633, Retrieved from the Internet <URL:http://www.lhnvd.com/000_vig_user_files/site_uploaded/54713/ESPIDMTBIonTorrentPoster2012.pdf> [retrieved on 20150701] *
HOWDEN B P ET AL: "Evolution of Multidrug Resistance during Staphylococcus aureus Infection Involves Mutation of the Essential Two Component Regulator WalKR", PLOS PATHOGENS, vol. 7, no. 11, 10 November 2011 (2011-11-10), pages 1 - 15, XP055169475, DOI: 10.1371/journal.ppat.1002359 *
MELLMANN A ET AL: "Prospective Genomic Characterization of the German Enterohemorrhagic Escherichia coli O104:H4 Outbreak by Rapid Next Generation Sequencing Technology", PLOS ONE, vol. 6, no. 7, 20 July 2011 (2011-07-20), pages e22751, XP055199494, DOI: 10.1371/journal.pone.0022751 *
See also references of WO2015066174A1 *

Also Published As

Publication number Publication date
CN106170560A (zh) 2016-11-30
EP3063301A1 (fr) 2016-09-07
CA2929108A1 (fr) 2015-05-07
AU2014342414B2 (en) 2017-06-29
WO2015066174A1 (fr) 2015-05-07
AU2014342414A1 (en) 2016-05-19

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