EP3063301A4 - Genomische sequenzierungsverfahren der nächsten generation - Google Patents

Genomische sequenzierungsverfahren der nächsten generation Download PDF

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Publication number
EP3063301A4
EP3063301A4 EP14856946.0A EP14856946A EP3063301A4 EP 3063301 A4 EP3063301 A4 EP 3063301A4 EP 14856946 A EP14856946 A EP 14856946A EP 3063301 A4 EP3063301 A4 EP 3063301A4
Authority
EP
European Patent Office
Prior art keywords
next generation
sequencing methods
genomic sequencing
generation genomic
methods
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Withdrawn
Application number
EP14856946.0A
Other languages
English (en)
French (fr)
Other versions
EP3063301A1 (de
Inventor
Luke T. Daum
Gerald W. Fischer
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Longhorn Vaccines and Diagnostics LLC
Original Assignee
Longhorn Vaccines and Diagnostics LLC
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Longhorn Vaccines and Diagnostics LLC filed Critical Longhorn Vaccines and Diagnostics LLC
Publication of EP3063301A1 publication Critical patent/EP3063301A1/de
Publication of EP3063301A4 publication Critical patent/EP3063301A4/de
Withdrawn legal-status Critical Current

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Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/70—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving virus or bacteriophage
    • C12Q1/701—Specific hybridization probes
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/6893—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for protozoa

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Health & Medical Sciences (AREA)
  • Zoology (AREA)
  • Analytical Chemistry (AREA)
  • Wood Science & Technology (AREA)
  • Engineering & Computer Science (AREA)
  • Immunology (AREA)
  • Biochemistry (AREA)
  • Microbiology (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Physics & Mathematics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Tropical Medicine & Parasitology (AREA)
  • Virology (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
EP14856946.0A 2013-10-29 2014-10-29 Genomische sequenzierungsverfahren der nächsten generation Withdrawn EP3063301A4 (de)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US201361897015P 2013-10-29 2013-10-29
PCT/US2014/062889 WO2015066174A1 (en) 2013-10-29 2014-10-29 Next generation genomic sequencing methods

Publications (2)

Publication Number Publication Date
EP3063301A1 EP3063301A1 (de) 2016-09-07
EP3063301A4 true EP3063301A4 (de) 2017-07-19

Family

ID=53005068

Family Applications (1)

Application Number Title Priority Date Filing Date
EP14856946.0A Withdrawn EP3063301A4 (de) 2013-10-29 2014-10-29 Genomische sequenzierungsverfahren der nächsten generation

Country Status (5)

Country Link
EP (1) EP3063301A4 (de)
CN (1) CN106170560A (de)
AU (1) AU2014342414B2 (de)
CA (1) CA2929108A1 (de)
WO (1) WO2015066174A1 (de)

Families Citing this family (30)

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Publication number Priority date Publication date Assignee Title
US11041216B2 (en) 2007-10-01 2021-06-22 Longhorn Vaccines And Diagnostics, Llc Compositions and methods for detecting and quantifying nucleic acid sequences in blood samples
TWI707038B (zh) 2013-08-05 2020-10-11 美商扭轉生物科技有限公司 重新合成之基因庫
US9981239B2 (en) 2015-04-21 2018-05-29 Twist Bioscience Corporation Devices and methods for oligonucleic acid library synthesis
KR20180050411A (ko) 2015-09-18 2018-05-14 트위스트 바이오사이언스 코포레이션 올리고핵산 변이체 라이브러리 및 그의 합성
CN108698012A (zh) 2015-09-22 2018-10-23 特韦斯特生物科学公司 用于核酸合成的柔性基底
WO2017091809A1 (en) * 2015-11-25 2017-06-01 Longhorn Vaccines And Diagnostics, Llc Compositions and methods for detecting and quantifying nucleic acid sequences in blood samples
CN105950726A (zh) * 2016-05-16 2016-09-21 杭州市疾病预防控制中心 结核分枝杆菌吡嗪酰胺分子药敏的检测方法
KR102212257B1 (ko) 2016-08-22 2021-02-04 트위스트 바이오사이언스 코포레이션 드 노보 합성된 핵산 라이브러리
WO2018057526A2 (en) 2016-09-21 2018-03-29 Twist Bioscience Corporation Nucleic acid based data storage
IL314890A (en) * 2016-11-18 2024-10-01 Twist Bioscience Corp Polynucleotide libraries having controlled stoichiometry and synthesis thereof
CN110892485B (zh) 2017-02-22 2024-03-22 特韦斯特生物科学公司 基于核酸的数据存储
AU2018234629A1 (en) 2017-03-15 2019-10-17 Twist Bioscience Corporation Variant libraries of the immunological synapse and synthesis thereof
JP7169999B2 (ja) 2017-06-12 2022-11-11 ツイスト バイオサイエンス コーポレーション シームレス核酸アセンブリのための方法
WO2018231864A1 (en) 2017-06-12 2018-12-20 Twist Bioscience Corporation Methods for seamless nucleic acid assembly
AU2018328847A1 (en) 2017-09-11 2020-04-23 Twist Bioscience Corporation GPCR binding proteins and synthesis thereof
US10368502B2 (en) 2017-09-25 2019-08-06 Multiple Energy Technologies Llc Bioceramic and carbon-based hydroponic systems, methods and devices
WO2019079769A1 (en) 2017-10-20 2019-04-25 Twist Bioscience Corporation HEATED NANOWELLS FOR THE SYNTHESIS OF POLYNUCLEOTIDES
EP4715681A2 (de) 2018-01-04 2026-03-25 Atlas Data Storage, Inc. Digitale informationsspeicherung auf dna-basis
WO2019204703A1 (en) * 2018-04-20 2019-10-24 Longhorn Vaccines And Diagnostics, Llc Rapid methods for the detection of microbial resistance
IL278771B2 (en) 2018-05-18 2025-09-01 Twist Bioscience Corp Polynucleotides, reagents and methods for nucleic acid hybridization
WO2020139871A1 (en) 2018-12-26 2020-07-02 Twist Bioscience Corporation Highly accurate de novo polynucleotide synthesis
WO2020176678A1 (en) 2019-02-26 2020-09-03 Twist Bioscience Corporation Variant nucleic acid libraries for glp1 receptor
AU2020227802A1 (en) 2019-02-26 2021-10-14 Twist Bioscience Corporation Variant nucleic acid libraries for antibody optimization
CA3144644A1 (en) 2019-06-21 2020-12-24 Twist Bioscience Corporation Barcode-based nucleic acid sequence assembly
EP4034564A4 (de) 2019-09-23 2023-12-13 Twist Bioscience Corporation Variante nukleinsäurebibliotheken für einzeldomänenantikörper
US12091777B2 (en) 2019-09-23 2024-09-17 Twist Bioscience Corporation Variant nucleic acid libraries for CRTH2
CN112779343A (zh) * 2019-11-07 2021-05-11 杭州迪安医学检验中心有限公司 一种病原微生物药敏检测方法
BR112022011235A2 (pt) 2019-12-09 2022-12-13 Twist Bioscience Corp Bibliotecas de variantes de ácido nucleico para receptores de adenosina
CN112410406A (zh) * 2020-11-23 2021-02-26 深圳基因家科技有限公司 一种确定文库扩增循环数的方法
EP4720337A1 (de) * 2023-06-05 2026-04-08 Rutgers, the State University of New Jersey Verfahren und systeme zum nachweis von pyrazinamidresistenzmutationen bei mycobacterium tuberculosis

Citations (10)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5550040A (en) * 1993-06-23 1996-08-27 Hoffman-La Roche Inc. Method, reagents and kits for the detection of Neisseria gonorrhoeae
WO2003080870A1 (en) * 2002-03-20 2003-10-02 Handylab Polynucleotide primers and probes for rapid detection of group b streptococcus (gbs)
WO2005001128A2 (en) * 2003-04-11 2005-01-06 University Of Florida Research Foundation, Inc. Materials and methods for producing dna libraries and detecting and identifying microorganisms
US20090233292A1 (en) * 2007-11-30 2009-09-17 Daniele Podini Method and kit for identification of genetic polymorphisms
US20110281754A1 (en) * 2006-09-12 2011-11-17 Longhorn Vaccines & Diagnostics, Llc Compositions and methods for detecting, identifying and quantitating mycobacterial-specific nucleic acids
CN102250924A (zh) * 2010-05-17 2011-11-23 中国疾病预防控制中心病毒病预防控制所 盖塔病毒全基因组序列、扩增方法及引物
US20120034685A1 (en) * 2010-08-06 2012-02-09 Tandem Diagnostics, Inc. Assay systems for determination of source contribution in a sample
WO2012037531A1 (en) * 2010-09-16 2012-03-22 Gen-Probe Incorporated Capture probes immobilizable via l-nucleotide tail
WO2013022961A1 (en) * 2011-08-08 2013-02-14 3The Broad Institute Compositions and methods for co-amplifying subsequences of a nucleic acid fragment sequence
WO2013169998A1 (en) * 2012-05-09 2013-11-14 Longhorn Vaccines And Diagnostics, Llc Ion torrent genomic sequencing

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US20090215050A1 (en) * 2008-02-22 2009-08-27 Robert Delmar Jenison Systems and methods for point-of-care amplification and detection of polynucleotides

Patent Citations (10)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5550040A (en) * 1993-06-23 1996-08-27 Hoffman-La Roche Inc. Method, reagents and kits for the detection of Neisseria gonorrhoeae
WO2003080870A1 (en) * 2002-03-20 2003-10-02 Handylab Polynucleotide primers and probes for rapid detection of group b streptococcus (gbs)
WO2005001128A2 (en) * 2003-04-11 2005-01-06 University Of Florida Research Foundation, Inc. Materials and methods for producing dna libraries and detecting and identifying microorganisms
US20110281754A1 (en) * 2006-09-12 2011-11-17 Longhorn Vaccines & Diagnostics, Llc Compositions and methods for detecting, identifying and quantitating mycobacterial-specific nucleic acids
US20090233292A1 (en) * 2007-11-30 2009-09-17 Daniele Podini Method and kit for identification of genetic polymorphisms
CN102250924A (zh) * 2010-05-17 2011-11-23 中国疾病预防控制中心病毒病预防控制所 盖塔病毒全基因组序列、扩增方法及引物
US20120034685A1 (en) * 2010-08-06 2012-02-09 Tandem Diagnostics, Inc. Assay systems for determination of source contribution in a sample
WO2012037531A1 (en) * 2010-09-16 2012-03-22 Gen-Probe Incorporated Capture probes immobilizable via l-nucleotide tail
WO2013022961A1 (en) * 2011-08-08 2013-02-14 3The Broad Institute Compositions and methods for co-amplifying subsequences of a nucleic acid fragment sequence
WO2013169998A1 (en) * 2012-05-09 2013-11-14 Longhorn Vaccines And Diagnostics, Llc Ion torrent genomic sequencing

Non-Patent Citations (6)

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Title
DAUM L T ET AL: "Genetic analysis of Mycobacterium tuberculosis drug-resistance genes from samples shipped in PrimeStore MTM and sequenced using the next-generation Ion Torrent", INTERNET CITATION, 4 May 2012 (2012-05-04), pages 1, XP002741633, Retrieved from the Internet <URL:http://www.lhnvd.com/000_vig_user_files/site_uploaded/54713/ESPIDMTBIonTorrentPoster2012.pdf> [retrieved on 20150701] *
GRABENSTEINER ET AL: "Development of a multiplex RT-PCR for the simultaneous detection of three viruses of the honeybee (Apis mellifera L.): Acute bee paralysis virus, Black queen cell virus and Sacbrood virus", JOURNAL OF INVERTEBRATE PATHO, SAN DIEGO, CA, US, vol. 94, no. 3, 14 February 2007 (2007-02-14), pages 222 - 225, XP005887833, ISSN: 0022-2011, DOI: 10.1016/J.JIP.2006.11.006 *
HOWDEN B P ET AL: "Evolution of Multidrug Resistance during Staphylococcus aureus Infection Involves Mutation of the Essential Two Component Regulator WalKR", PLOS PATHOGENS, vol. 7, no. 11, 10 November 2011 (2011-11-10), pages 1 - 15, XP055169475, DOI: 10.1371/journal.ppat.1002359 *
JUN-ICHIRO SEKIGUCHI ET AL: "Detection of Multidrug Resistance in Mycobacterium tuberculosis", JOURNAL OF CLINICAL MICROBIO, AMERICAN SOCIETY FOR MICROBIOLOGY, US, vol. 45, no. 1, 1 January 2007 (2007-01-01), pages 179 - 192, XP008139017, ISSN: 0095-1137, [retrieved on 20061115], DOI: 10.1128/JCM.00750-06 *
MELLMANN A ET AL: "Prospective Genomic Characterization of the German Enterohemorrhagic Escherichia coli O104:H4 Outbreak by Rapid Next Generation Sequencing Technology", PLOS ONE, vol. 6, no. 7, 20 July 2011 (2011-07-20), pages e22751, XP055199494, DOI: 10.1371/journal.pone.0022751 *
See also references of WO2015066174A1 *

Also Published As

Publication number Publication date
EP3063301A1 (de) 2016-09-07
CN106170560A (zh) 2016-11-30
AU2014342414B2 (en) 2017-06-29
WO2015066174A1 (en) 2015-05-07
CA2929108A1 (en) 2015-05-07
AU2014342414A1 (en) 2016-05-19

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