CN115011723A - Site linked with pear peel red character, molecular marker and application thereof - Google Patents

Site linked with pear peel red character, molecular marker and application thereof Download PDF

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CN115011723A
CN115011723A CN202210685255.0A CN202210685255A CN115011723A CN 115011723 A CN115011723 A CN 115011723A CN 202210685255 A CN202210685255 A CN 202210685255A CN 115011723 A CN115011723 A CN 115011723A
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欧春青
姜淑苓
王斐
张艳杰
马力
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Fruit Tree Institute of CAAS
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Abstract

The invention relates to a locus linked with a pear peel red character, a molecular marker and application thereof. The nucleotide sequence of the site includes the nucleotide sequence of the site located at base 26527817 of Chr5 of the 'medium short No. 1' pear reference genome, GeneBank accession No.: SMOL 00000000. The nucleotide sequence of this site was ATAACTAGCAAAAATAAGACACGAAATGTTAAATACT or A. The locus and the molecular marker developed based on the locus can be used for pear peel red/green character auxiliary selective breeding, green peel single plants are quickly eliminated in the seedling stage of hybrid seedlings, the maintenance and identification and evaluation cost of subsequent hybrid seedlings is saved, the red peel pear breeding efficiency is obviously improved, and the method has the advantages of wide applicable varieties, high red plant detection rate, low error rate, high phenotype and banding pattern consistency rate and the like.

Description

Site linked with pear peel red character, molecular marker and application thereof
Technical Field
The invention belongs to the field of pear molecular genetic breeding, and particularly relates to a locus linked with a pear peel red character, a molecular marker and application thereof.
Background
The pear (Pyrus L.) is an important Rosaceae (Rosaceae) fruit tree, is one of three fruits in China, and shows that the pear cultivation area in China is 87 ten thousand hectares and the yield is 1610 ten thousand tons in 2020 according to the data of a food and agriculture organization statistical database (FAOSTAT) in the United nations, and the pear (Pyrus L.) respectively accounts for 67 percent and 70 percent of the total area and the yield in the world, and occupies an important position in the fruit tree industry. In recent years, red pears are more and more favored by consumers due to their attractive appearance and rich nutritional value. However, in actual production, a few red pears can be cultivated in China, and particularly, the pear varieties mainly cultivated in China are oriental pears and lack red varieties with excellent quality and stable coloring, so that the red-peel pears are always important breeding targets of pear breeding workers in China and even all over the world.
At present, crossbreeding is the most common breeding mode in pear breeding. As the pears are perennial fruit trees, the trait inheritance mechanism is complex, the optimization rate of hybrid progeny is low, the seedlings usually need to spend 3-5 years or even longer in the juvenile period to blossom and bear fruits, a large amount of land, manpower and material resources are needed in the breeding process, and the breeding cost is high.
The markers developed by the former people mostly need to adopt a fluorescent quantitative PCR or common PCR plus polyacrylamide gel electrophoresis mode to distinguish the phenotypes of different samples to be tested, and the markers have the defects of high cost, complicated experimental procedures and the like. Therefore, the development of molecular markers which can successfully distinguish the phenotypes of different samples by using common PCR and agarose gel electrophoresis can greatly reduce the experiment cost and improve the breeding efficiency.
The important premise of applying the molecular marker assisted selective breeding technology to pear breeding is to develop molecular markers closely linked with important characters of pears. The red peel is taken as an important appearance quality character of the pear fruit, the character inheritance mechanism is complex, the formation mechanism of the red character of different red pear varieties is different, the existing molecular marker has the problem of low accuracy, and a wider and effective marker locus needs to be developed to be applied to pear breeding work.
Many sites exist in the chromosome of pear, but not all the sites are suitable for being used as molecular markers, and not all the molecular markers can be used for auxiliary selection of red/green characters of pear peel, so that the technical difficulty to be solved urgently is how to screen out the suitable molecular markers, and the accuracy and the screening efficiency can be further improved, and the error rate can be reduced.
Disclosure of Invention
In view of the problems in the prior art, the invention provides the locus and the molecular marker linked with the red character of the pear peel and the application thereof, the locus and the molecular marker can be used for the auxiliary selective breeding of the red/green character of the pear peel, individual green peel plants are quickly eliminated in the seedling stage of hybrid seedlings, the maintenance, identification and evaluation costs of subsequent hybrid seedlings are saved, the breeding efficiency of the red peel pears is obviously improved, and the locus and the molecular marker have the advantages of wide applicable varieties, high accuracy, high red plant detection rate, low error rate, high phenotype and banding pattern consistency rate and the like.
The technical scheme for solving the technical problems is as follows:
a site linked to the rind red trait, the nucleotide sequence of the site comprising a nucleotide sequence of a site located at 26527817 bases of Chr5 of the 'medium short No. 1' pear reference genome, GeneBank accession No.: SMOL 00000000.
The invention has the beneficial effects that: the mark can be used for pear peel red/green character auxiliary selective breeding, green peel single plants are quickly eliminated in the seedling stage of hybrid seedlings, the maintenance and identification and evaluation cost of subsequent hybrid seedlings is saved, the red peel pear breeding efficiency is obviously improved, and the mark has the advantages of wide applicable varieties, high accuracy, high red plant detection rate, low error rate, high phenotype and banding pattern consistency rate and the like.
Further, the nucleotide sequence at nucleotide position was ATAACTAGCAAAAATAAGACACGAAATGTTAAATACT or A.
The invention provides application of the locus in pear peel red/green character auxiliary selective breeding.
The invention has the beneficial effects that: based on the loci, a marker primer and the like can be developed, the method can be used for pear peel red/green character auxiliary selective breeding, green peel single plants are quickly eliminated in the seedling stage of hybrid seedlings, the subsequent hybrid seedling maintenance and identification and evaluation cost is saved, the red peel pear breeding efficiency is obviously improved, and the method has the advantages of wide applicable varieties, high accuracy, high red plant detection rate, low error rate, high phenotype and banding pattern consistency rate and the like.
The invention provides a molecular marker linked with the red character of pear peel, and the locus is positioned in the amplified product of the molecular marker.
Further, the upstream primer sequence of the molecular marker comprises a sequence shown by SEQ ID NO. 1, and the downstream primer sequence of the molecular marker comprises a sequence shown by SEQ ID NO. 2.
Preferably, the sequence of the upstream primer of the molecular marker is the sequence shown in SEQ ID NO. 1, and the sequence of the downstream primer of the molecular marker is the sequence shown in SEQ ID NO. 2.
The invention also provides application of the molecular marker in pear peel red/green character auxiliary selective breeding.
The invention provides a primer for amplifying the molecular marker.
Further, the primer includes a sequence shown by SEQ ID NO. 1 and/or a sequence shown by SEQ ID NO. 2. Preferably, the upstream primer is a sequence shown as SEQ ID NO. 1, and the downstream primer is a sequence shown as SEQ ID NO. 2.
Adopt above-mentioned technical scheme's beneficial effect: the primers can realize the auxiliary selective breeding of the pear peel red/green characters, quickly eliminate the green peel single plant in the seedling stage of the hybrid seedling, save the maintenance and identification and evaluation cost of the subsequent hybrid seedling, obviously improve the breeding efficiency of the red peel pear, and have the advantages of wide applicable varieties, high accuracy, high red plant detection rate, low error rate, high phenotype and banding consistency rate and the like.
The invention provides application of the primer in pear peel red/green character auxiliary selective breeding.
The invention provides a pear peel color auxiliary selective breeding kit, which comprises the primers.
Adopt above-mentioned technical scheme's beneficial effect: by adopting the kit, the pear peel red/green character auxiliary selective breeding can be realized, the green peel single plant is quickly eliminated in the seedling stage of the hybrid seedling, the subsequent maintenance and identification and evaluation cost of the hybrid seedling is saved, the red peel pear breeding efficiency is obviously improved, and the kit has the advantages of wide applicable varieties, high accuracy, high red plant detection rate, low error rate, high phenotype and banding pattern consistency rate and the like.
Further, the kit further comprises: one or more of enzyme, deionized water, positive control and negative control are used for PCR amplification.
The invention provides application of the kit in pear peel red/green character auxiliary selective breeding.
The invention provides a method for auxiliary selective breeding of pear peel red/green characters, which comprises the following steps: extracting DNA of hybrid seedlings or pear varieties to be selected and bred, and carrying out PCR amplification by adopting the primers. Or extracting DNA of hybrid seedlings or pear varieties to be selected and bred, and carrying out PCR amplification by adopting the kit.
Further, the method comprises the following steps: extracting DNA of hybrid seedlings or pear varieties to be selected and bred, and carrying out PCR amplification by adopting a primer pair, wherein the primer pair comprises a sequence shown as SEQ ID NO. 1 and a sequence shown as SEQ ID NO. 2.
Adopt above-mentioned technical scheme's beneficial effect: the method of PCR amplification combined with agarose electrophoresis is adopted, the experiment operation is simple, different sample phenotypes can be successfully distinguished without complex and expensive instruments, the experiment cost is greatly reduced, and the breeding efficiency is improved. The primer has the advantage of high accuracy, can realize the auxiliary selective breeding of the pear peel red/green character, quickly eliminates a single green peel plant in the seedling stage of hybrid seedlings, saves the subsequent maintenance and identification and evaluation cost of the hybrid seedlings, obviously improves the breeding efficiency of the red peel pears, and has the advantages of wide applicable varieties, high accuracy, high red plant detection rate, low error rate, high phenotype and banding consistency rate and the like.
Further, the reaction conditions for PCR amplification include: 3min at 94 ℃; at 95 ℃ for 10s, at 54 ℃ for 30s, at 72 ℃ for 30s, for 35 cycles; 5min at 72 ℃.
Adopt above-mentioned technical scheme's beneficial effect: the amplification conditions are favorable for obtaining clear and definite banding, and the analysis and judgment of the result are favorable.
The marker provided by the invention is suitable for pear peel red/green character auxiliary selective breeding of hybrid progeny among different pear varieties. For example: the hybrid progeny between green peel varieties such as apple pear ' x ' August red ', ' August red X red crisp ', pear, Nanguo, early crisp, Huasu, Huajin, Huanxi, yellow crown, Beijing white, Anli pear, floral cover, gold, arrowpear, Dangshan crisp, snow green, Xizi green, Zhongdwarf No. 4, junxiagreen, jade green, faint scent, emerald green crown, Zhongli pear No. 1, golden flower No. 4 and red peel varieties such as August red, Korla fragrant pear, Zhongdwarf No. 1, Yulu fragrant, red crisp, brocade fragrant, dwarf fragrant, Zhongdwarf No. 1, Zhongdwarf No. 2, Zhongdwarf No. 5 and the hybrid progeny between the red peel varieties and the like.
The 'August' is a new early-maturing crisp flesh red pear variety bred by 'Zaoba pear' x 'early crisp' hybridization, the fruit flavor is sweet and sour, the peel is easily red in large area and is deeply loved by consumers and breeders, the 'August' is one of excellent parents for breeding the new red skin pear variety, and the application is wide.
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FIG. 1 shows the mapping of the red pericarp trait in the genome in a complex interval mapping method, with the ordinate representing the LOD value, the abscissa representing the distribution of mapping blocks on the chromosome, and the gray horizontal line representing the LOD threshold corresponding to 0.99 confidence level when tested 1000 times with PT (7.916).
FIG. 2 is a schematic diagram of the band of B717-Del3SCAR Marker in red-peel pear and green-peel pear in example 1, wherein 1, 2, 3 and 4 are red-peel pear bands, 5 and 6 are green-peel pear bands, and M is DNA Marker.
FIG. 3 is a graph showing the amplification results of B717-Del3SCAR Marker in the progeny of the 150 hybrid combinations of apple pear ' × ' August red ' in example 2 (the numbers above the bands correspond to samples Nos. 1-150, respectively (clear bands are not detected for the first time and obtained for the second time of re-amplification of samples Nos. 18, 20, 21, 71 and 111 due to manipulation), and M is DNA Marker.
FIG. 4 is a graph showing the results of amplification in the progeny of the 185 hybrid combinations of B717-Del3SCAR marker ` August ` X ` Red crisp ` in example 3 (the numbers above the bands correspond to samples Nos. 1-185, respectively, and no clear bands were detected in the 49, 61, 70, 153, and 154 samples for the first time and obtained in the second amplification); m is DNA Marker.
FIG. 5 shows the amplification of B717-In1 Marker In the progeny of strain ` August Red X Red crispy ` 185 In example 3, M being DNA Marker; part of the bands were amplified twice to obtain clear bands.
FIG. 6 shows the amplification of B717-Del2 Marker in the progeny of strain ` August Red X Red crispy ` 185 in example 3, M is DNA Marker; part of the bands were amplified twice to obtain clear bands.
FIG. 7 is a graph showing the amplification results of the B717-Del3SCAR marker in 47 varieties of pear in example 4; m is DNA Marker.
FIG. 8 shows the results of the amplification of the B717-Del2 SCAR marker in 47 varieties of pear in example 4; m is DNA Marker.
Detailed Description
The principles and features of this invention are described below in conjunction with the following drawings, which are set forth by way of illustration only and are not intended to limit the scope of the invention.
The invention provides an InDel locus linked with a pear peel red character, a molecular marker based on the locus and application of the molecular marker.
The InDel site linked with the rind red character of the pear peel is positioned at 26527817 bases of Chr5 of a 'Zhongdwarf No. 1' pear reference genome (GeneBank accession number: SMOL00000000), the base sequence of the InDel site is 5'-ATAACTAGCAAAAATAAGACACGAAATGTTAAATACT-3' as shown in SEQ ID NO:3, and the variant sequence is A.
The variation range of the variation site is larger and has a difference of 36bp, so that the amplified fragments can be easily distinguished through simple agarose electrophoresis. The locus is located in the area (shown in figure 1) near the LOD peak value in the chromosome positioning result of the red skin character, and the obtained area closely linked with the red character is closer to the peak value, which shows that the linkage relation is more reliable, and the selected marker is more accurate, so that the method can be used for auxiliary selective breeding of the red/green character of the pear peel.
The invention provides an SCAR molecular marker developed based on the InDel site, which is marked as B717-Del3, wherein the InDel site is positioned inside an amplification product of the SCAR molecular marker.
The B717-Del3SCAR molecular marker disclosed by the invention is applied to pear peel red character auxiliary selective breeding. The length difference of 2 fragments amplified by adopting the marker is large, and the identification is easy.
The primer pair of the B717-Del3SCAR molecular marker is as follows:
upstream primer (forward primer) sequence: 5'-CGCTGTGGTACGTCTACAAATT-3', as shown in SEQ ID NO: 1;
downstream primer (reverse primer) sequence: 5'-TTTGACGATCGCGTACCAT-3', as shown in SEQ ID NO: 2.
The primer pair is applied to pear peel red character breeding. The 2 fragments amplified by the marker have larger length difference and are easy to distinguish.
The invention identifies 2 hybridization combination groups of ' apple pear ' x ' August ' and ' August ' x ' red crisp by adopting the molecular markers, and the B717-Del3SCAR marker can select individual plants with red pericarp in a test group, and the selection efficiency can reach 100% and 98.25%. The B717-Del3SCAR marker provided by the invention can accurately distinguish red-peel varieties and green-peel varieties, can be applied to early selection of red-peel pear breeding taking the varieties as parents, can obviously improve the efficiency of the red-peel pear breeding, and has a good application prospect. The invention has the advantages of wide applicable varieties, high accuracy, high red plant detection rate, low error rate, high phenotype and banding pattern consistency rate and the like.
In the examples, 2 XTaq PCR Mix (containing dye) was purchased from Beijing Tianenzze Gene science and technology, Inc., as a ready-to-use PCR kit 3.0(CAT #: 90805-10).
Primer sequences were synthesized by Zhongmeitai and Biotechnology (Beijing) Inc.
The experimental materials not specifically described in the present invention can be commercially available or prepared by a method conventional in the art. The methods of the present invention are conventional in the art and not specifically described.
This is further illustrated by the following specific examples.
Example 1
The method for identifying the pear peel red character by using a B717-Del3 molecular marker primer pair comprises the following steps:
(1) collecting young leaves of hybrid pear plants (or different pear varieties) and extracting DNA.
(2) The extracted DNA was PCR-amplified using the B717-Del3 molecular marker primer set, and 20. mu.L of the reaction system was used for PCR amplification, the composition of the reaction system components and the PCR reaction program are shown in tables 1 and 2, and the molecular marker primer set for amplification is shown in Table 3.
TABLE 1 PCR reaction System
Figure BDA0003694400070000081
TABLE 2 PCR reaction procedure
Figure BDA0003694400070000082
TABLE 3B 717-Del3SCAR marker primer sequences
Figure BDA0003694400070000091
(3) Performing 3% agarose gel electrophoresis on the PCR product, performing band statistics on the electrophoresis result, wherein the band types of the red-skin and green-skin single plants in the label are shown in figure 2, and if the band shapes are 151bp and 115bp double bands or 115bp single bands, the red-skin single plants are indicated; if the band shape is 151bp single band, the green skin single strain is indicated.
By using the method, the green pericarp single plant can be quickly eliminated in the seedling stage of the hybrid seedling, the subsequent maintenance and identification and evaluation cost of the hybrid seedling is saved, and the breeding efficiency of the red-peel pear is obviously improved.
Example 2
PCR amplification was performed on progeny of the ` apple pear X August red ` 150 strain using the B717-Del3 marker, the B717-In1 marker, and the B717-Del2 marker, respectively.
Scheme 1: PCR amplification was performed in the progeny of the ` apple pear ` August Red ` 150 strain using the B717-Del3 marker, using the same procedure as in example 1.
Scheme 2: PCR amplification was performed In the progeny of the 'apple pear X August red' 150 strain using the B717-In1 marker, and the procedure was the same as In example 1 except that the primers were different. The B717-In1 labeled primers were:
upstream primer (forward primer) sequence: 5'-AAGCAGCAAAAACTGAGTCACT-3', as shown in SEQ ID NO. 4; downstream primer (reverse primer) sequence: 5'-TGCCTTTACAGTCCCATTTG-3', as shown in SEQ ID NO: 5.
The judging method comprises the following steps: according to the PCR amplification result, if the band is 138bp and 172bp double bands or 172bp single band, the red skin single plant is shown; if the band shape is 138bp single band, the green skin single strain is indicated.
Scheme 3: PCR amplification was performed on progeny of the ` apple pear X August ` 150 strain using the B717-Del2 marker, and the procedure was the same as in example 1 except for the primers. The B717-Del2 labeled primers were:
upstream primer (forward primer) sequence: TCCTCCTTGGACTCTCTGTGG (SEQ ID NO: 6); downstream primer (reverse primer) sequence: CGCAGAACCATATCAGCAAAA (SEQ ID NO: 7).
The judging method comprises the following steps: PCR amplification results, if the band is 196bp and 133bp double bands or 133bp single band, the red skin single plant is indicated; if the band is 196bp single band, it is indicated as green skin single strain.
Scheme 4: the combined detection of the 'apple pear X August red' 150 plant offspring is carried out by adopting a B717-In1 marker and a B717-Del2 marker, namely, the B717-In1 marker detection and the B717-Del2 marker detection are firstly carried out on each sample. The detection method using B717-In1 label was the same as In scheme 2. The detection method using B717-Del2 marker was the same as in scheme 3.
The judging method comprises the following steps: if the amplification result of any one of the labeled primer pairs shows that the individual is a red-skinned individual, the individual can be initially considered to have a red phenotype. Otherwise, the individual can be initially identified as green phenotype.
The experimental results are as follows:
as shown In Table 4 and FIG. 3, the B717-Del3 marker is used for identification In the offspring of the 'apple pear X August red' 150 strain, the detection rate of the red strain is 100%, the detection result is consistent with the combined detection result of B717-In1+ B717-Del2, and the detection rate of the red strain marked by the B717-Del3 marker is obviously higher than the detection results of B717-In1 and B717-Del2 alone.
The total error rate of the identification of the B717-Del3 marker In the offspring of the 'apple pear X August red' 150 strain is 2%, and is consistent with the combined detection results of B717-In1 and B717-Del2, and the total error is obviously lower than the independent detection results of B717-In1 and B717-Del2, which shows that the error rate can be obviously reduced by adopting the B717-Del3 marker compared with the B717-In1 and the B717-Del 2.
The B717-Del3 marker can quickly eliminate green rind single plants in the seedling stage of the hybrid seedlings, save the maintenance and identification and evaluation cost of the subsequent hybrid seedlings and obviously improve the breeding efficiency of the red-rind pears.
TABLE 4 amplification In the progeny of the ` apple pear X August Red ` 150 strain marked with B717-Del3, B717-In1, B717-Del2, respectively
Figure BDA0003694400070000101
Figure BDA0003694400070000111
Example 3
PCR amplification was performed using the B717-Del3 marker, the B717-In1 marker, the B717-Del2 marker In the progeny of the ` August Red X Red crispy ` 185 strain.
Scheme 1: PCR amplification was performed in the progeny of strain ` August Red X Red crispy ` 185 using the B717-Del3 marker, using the same procedure as in scheme 1 of example 2.
Scheme 2: PCR amplification is carried out In the 'August red X red crispy' 185 strain progeny by adopting the B717-In1 marker, and the operation steps, the sequences of the B717-In1 marked primers and the judgment method are the same as the scheme 2 of the example 2.
Scheme 3: PCR amplification was carried out in the progeny of strain ` August Red X red crispy ` 185 using the B717-Del2 marker, and the procedure, sequence of the B717-Del2 labeled primer and the judgment method were the same as in scheme 3 of example 2.
Scheme 4: the combined detection of the 'August red x red crispy' 185 strain generations is carried out by adopting a B717-In1 marker and a B717-Del2 marker, namely, each sample is firstly detected by adopting a B717-In1 marker and then detected by adopting a B717-Del2 marker. The procedure, the sequence and determination method of the B717-In 1-labeled primer, and the sequence and determination method of the B717-Del 2-labeled primer were the same as those described In scheme 4 of example 2.
The experimental results are as follows:
as shown In Table 5 and FIGS. 4 to 6, the B717-Del3 is marked In the filial generation of the 'August red X red crispy' 185 strain for identification, the detection rate of the red strain is 98.25 percent, which is higher than the detection results of the B717-In1+ B717-Del2 combination and the B717-In1 and the B717-Del2 separately; the total error rate is 10.27 percent and is lower than the results of separate detection of B717-In1+ B717-Del2 combination, B717-In1 and B717-Del2 when the B717-Del3 mark is used for identification In the filial generation of the 'August red X red crispy' 185 strain.
TABLE 5 amplification of the progeny of the ` August Red X Red crispy ` 185 strain using the B717-Del3 marker, the B717-In1 marker, the B717-Del2 marker
Figure BDA0003694400070000121
Example 4
PCR amplification was performed in 47 varieties of pear using the B717-Del3 marker and the B717-Del2 marker, respectively.
Scheme 1: PCR amplification was performed in 47 varieties of pear using the B717-Del3 marker, using the same procedure as in example 1.
Scheme 2: PCR amplification was performed on 47 varieties of pear using the B717-Del2 marker, and the procedure, the sequence of the B717-Del 2-labeled primer and the method of determination were the same as in scheme 3 of example 2.
The experimental results are as follows:
as shown in Table 6 and FIGS. 7 to 8, the coincidence rate of the phenotype and the banding pattern is 74.47% and is obviously higher than that of the B717-Del2 marker when the B717-Del3 marker is used for verification on 47 different pear varieties.
The B717-Del3 marker can be used for selecting pear varieties with band types consistent with the peel phenotypes of the varieties, the varieties are used as parents (one of the parents is red phenotype) for hybridization, the SCAR marker can be used for identifying the peel colors of filial generations of hybridized seedlings at an early stage, green peel single plants are quickly eliminated at a seedling stage, the maintenance and identification evaluation costs of subsequent hybridized seedlings are saved, and the breeding efficiency of the red-peel pears is obviously improved.
TABLE 6 amplification in 47 pear varieties using the B717-Del3 marker, B717-Del2 marker
Figure BDA0003694400070000122
Figure BDA0003694400070000131
The above description is only for the purpose of illustrating the preferred embodiments of the present invention and is not to be construed as limiting the invention, and any modifications, equivalents, improvements and the like that fall within the spirit and principle of the present invention are intended to be included therein.
Sequence listing
<110> research institute of fruit trees of Chinese academy of agricultural sciences
<120> site linked with pear peel red character, molecular marker and application thereof
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<213> Artificial Sequence (Artificial Sequence)
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cgctgtggta cgtctacaaa tt 22
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<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 2
tttgacgatc gcgtaccat 19
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ataactagca aaaataagac acgaaatgtt aaatact 37
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<211> 22
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<213> Artificial Sequence (Artificial Sequence)
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aagcagcaaa aactgagtca ct 22
<210> 5
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<212> DNA
<213> Artificial Sequence (Artificial Sequence)
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tgcctttaca gtcccatttg 20
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tcctccttgg actctctgtg g 21
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<213> Artificial Sequence (Artificial Sequence)
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cgcagaacca tatcagcaaa a 21

Claims (10)

1. A locus linked to the rind red trait of pear fruit, wherein the nucleotide sequence of the locus comprises the nucleotide sequence of the locus at base 26527817 of Chr5 of the 'medium short No. 1' pear reference genome, GeneBank accession No.: SMOL 00000000.
2. The site according to claim 1, wherein the base sequence at the base is ATAACTAGCAAAAATAAGACACGAAATGTTAAATACT or A.
3. A molecular marker linked to the rind red trait of pomes, wherein the site of claim 1 or 2 is located within the amplified product of the molecular marker.
4. The molecular marker of claim 3, wherein the upstream primer sequence of the molecular marker comprises the sequence shown in SEQ ID NO. 1, and the downstream primer sequence of the molecular marker comprises the sequence shown in SEQ ID NO. 2.
5. A primer for amplifying the molecular marker of claim 3 or 4.
6. The primer of claim 5, comprising: the sequence shown in SEQ ID NO. 1 and/or the sequence shown in SEQ ID NO. 2.
7. A pear peel color-assisted selective breeding kit, which is characterized by comprising the primer of claim 5 or 6.
8. A combination of loci linked to the rind red trait comprising the loci of claim 1 or 2.
9. The use of one or more of the locus of claim 1 or 2, the molecular marker of claim 3 or 4, the primer of claim 5 or 6, the kit of claim 7 and the locus combination of claim 8 in pear pericarp red/green trait-assisted selective breeding.
10. A method for auxiliary selective breeding of pear peel red/green characters is characterized by comprising the following steps: extracting DNA of hybrid seedlings or pear varieties to be selected and bred, and carrying out PCR amplification by using the primers of claim 5 or 6 or the kit of claim 7.
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