CN110832084B - 用于制备核酸文库的方法、组合物和试剂盒 - Google Patents

用于制备核酸文库的方法、组合物和试剂盒 Download PDF

Info

Publication number
CN110832084B
CN110832084B CN201880040163.9A CN201880040163A CN110832084B CN 110832084 B CN110832084 B CN 110832084B CN 201880040163 A CN201880040163 A CN 201880040163A CN 110832084 B CN110832084 B CN 110832084B
Authority
CN
China
Prior art keywords
sequence
ato
target
target polynucleotide
universal
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Active
Application number
CN201880040163.9A
Other languages
English (en)
Chinese (zh)
Other versions
CN110832084A (zh
Inventor
富国良
T·邓威尔
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Genefirst Ltd
Original Assignee
Genefirst Ltd
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from GBGB1706059.1A external-priority patent/GB201706059D0/en
Priority claimed from GBGB1708384.1A external-priority patent/GB201708384D0/en
Priority claimed from GBGB1719114.9A external-priority patent/GB201719114D0/en
Application filed by Genefirst Ltd filed Critical Genefirst Ltd
Priority to CN202510735693.7A priority Critical patent/CN120796437A/zh
Publication of CN110832084A publication Critical patent/CN110832084A/zh
Application granted granted Critical
Publication of CN110832084B publication Critical patent/CN110832084B/zh
Active legal-status Critical Current
Anticipated expiration legal-status Critical

Links

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6806Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/10Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1034Isolating an individual clone by screening libraries
    • C12N15/1093General methods of preparing gene libraries, not provided for in other subgroups
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869Methods for sequencing
    • C12Q1/6874Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation
    • CCHEMISTRY; METALLURGY
    • C40COMBINATORIAL TECHNOLOGY
    • C40BCOMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
    • C40B50/00Methods of creating libraries, e.g. combinatorial synthesis
    • C40B50/06Biochemical methods, e.g. using enzymes or whole viable microorganisms

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Genetics & Genomics (AREA)
  • Analytical Chemistry (AREA)
  • Biochemistry (AREA)
  • General Engineering & Computer Science (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biotechnology (AREA)
  • Molecular Biology (AREA)
  • Microbiology (AREA)
  • General Health & Medical Sciences (AREA)
  • Biophysics (AREA)
  • Physics & Mathematics (AREA)
  • Immunology (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Biomedical Technology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Crystallography & Structural Chemistry (AREA)
  • Plant Pathology (AREA)
  • Medicinal Chemistry (AREA)
  • General Chemical & Material Sciences (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Enzymes And Modification Thereof (AREA)
CN201880040163.9A 2017-04-17 2018-04-17 用于制备核酸文库的方法、组合物和试剂盒 Active CN110832084B (zh)

Priority Applications (1)

Application Number Priority Date Filing Date Title
CN202510735693.7A CN120796437A (zh) 2017-04-17 2018-04-17 用于制备核酸文库的方法、组合物和试剂盒

Applications Claiming Priority (7)

Application Number Priority Date Filing Date Title
GB1706059.1 2017-04-17
GBGB1706059.1A GB201706059D0 (en) 2017-04-17 2017-04-17 Methods, compositions, and kits for preparing library and targeted sequencing
GBGB1708384.1A GB201708384D0 (en) 2017-05-25 2017-05-25 Methods, compositions, and kits for preparing library and targeted sequencing
GB1708384.1 2017-05-25
GB1719114.9 2017-11-17
GBGB1719114.9A GB201719114D0 (en) 2017-11-17 2017-11-17 Methods, compositions, and kits for preparing library and targeted sequencing
PCT/GB2018/051000 WO2018193233A1 (en) 2017-04-17 2018-04-17 Methods, compositions, and kits for preparing nucleic acid libraries

Related Child Applications (1)

Application Number Title Priority Date Filing Date
CN202510735693.7A Division CN120796437A (zh) 2017-04-17 2018-04-17 用于制备核酸文库的方法、组合物和试剂盒

Publications (2)

Publication Number Publication Date
CN110832084A CN110832084A (zh) 2020-02-21
CN110832084B true CN110832084B (zh) 2025-06-20

Family

ID=62089770

Family Applications (2)

Application Number Title Priority Date Filing Date
CN201880040163.9A Active CN110832084B (zh) 2017-04-17 2018-04-17 用于制备核酸文库的方法、组合物和试剂盒
CN202510735693.7A Pending CN120796437A (zh) 2017-04-17 2018-04-17 用于制备核酸文库的方法、组合物和试剂盒

Family Applications After (1)

Application Number Title Priority Date Filing Date
CN202510735693.7A Pending CN120796437A (zh) 2017-04-17 2018-04-17 用于制备核酸文库的方法、组合物和试剂盒

Country Status (8)

Country Link
US (4) US11408025B2 (https=)
EP (1) EP3612642B1 (https=)
JP (1) JP7079029B2 (https=)
CN (2) CN110832084B (https=)
AU (1) AU2018254190B2 (https=)
CA (1) CA3060018A1 (https=)
ES (1) ES3035812T3 (https=)
WO (1) WO2018193233A1 (https=)

Families Citing this family (21)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
AU2018254190B2 (en) 2017-04-17 2024-05-30 Guoliang Fu Methods, compositions, and kits for preparing nucleic acid libraries
CA3120713A1 (en) * 2018-11-21 2020-05-28 Avida Biomed, Inc. Methods for targeted nucleic acid library formation
US11390915B2 (en) * 2019-04-26 2022-07-19 New England Biolabs, Inc. Polynucleotide adapter design for reduced bias
CN114026249B (zh) 2019-06-20 2024-01-23 深圳华大生命科学研究院 基于rna样本构建文库的方法及应用
US20220356467A1 (en) * 2019-06-25 2022-11-10 Board Of Regents, The University Of Texas System Methods for duplex sequencing of cell-free dna and applications thereof
CN121344163A (zh) * 2020-01-16 2026-01-16 Dnae诊断有限公司 用于分离靶多核苷酸的组合物、试剂盒和方法
WO2021232023A2 (en) * 2020-05-15 2021-11-18 Swift Biosciences, Inc. Methods for ligation-coupled-pcr
MX2023001400A (es) * 2020-09-11 2023-04-25 Illumina Cambridge Ltd Metodos para enriquecer una secuencia diana a partir de una genoteca de secuenciación usando adaptadores de horquilla.
GB202108427D0 (en) 2021-06-14 2021-07-28 Fu Guoliang Methods, compositions, and kits for preparing sequencing library
CN113684249B (zh) * 2021-08-25 2024-10-22 广州达安基因股份有限公司 一种rna和dna二代测序文库的构建方法及二代测序盒
US20250354297A1 (en) * 2021-10-29 2025-11-20 Board Of Regents, The University Of Texas System Shielded small nucleotides for intracellular barcoding
AU2023221441B2 (en) * 2022-02-18 2026-04-09 Agilent Technologies, Inc. Systems and methods for targeted nucleic acid capture and barcoding
EP4490313A1 (en) * 2022-03-09 2025-01-15 New England Biolabs, Inc. Target enrichment
CN117487884B (zh) * 2022-08-01 2025-04-15 南京诺唯赞生物科技股份有限公司 一种高样品利用率的基于转座酶的测序文库构建方法及相关寡核苷酸
CN120603940A (zh) * 2022-11-11 2025-09-05 生米公司 用于处理和扩增核酸的方法和组合物
WO2024137316A1 (en) * 2022-12-23 2024-06-27 Foundation Medicine, Inc. Oligonucleotides and methods for capturing single-stranded templates and/or templates with 3' overhangs
GB202308392D0 (en) 2023-06-06 2023-07-19 Fu Guoliang Methods, compositions, and kits for preparing library and targeted sequencing
GB202319353D0 (en) 2023-12-17 2024-01-31 Fu Guoliang Tail sequence guided addition of adaptor
CN117701679B (zh) * 2024-02-06 2024-06-14 中国医学科学院基础医学研究所 一种基于5’连接的单链dna特异的高通量测序方法
WO2025184067A1 (en) * 2024-02-26 2025-09-04 Biomeme, Inc. Methods and compositions for processing and amplification of nucleic acids
WO2026050948A1 (zh) * 2024-09-04 2026-03-12 深圳华大生命科学研究院 核酸文库的构建方法及应用

Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2007062495A1 (en) * 2005-11-30 2007-06-07 Roy Rabindranauth Sooknanan Selective terminal tagging of nucleic acids

Family Cites Families (15)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CA2501983A1 (en) * 2002-10-30 2004-05-27 Pamgene B.V. Improved methods for generating multiple rna copies
US20050153333A1 (en) * 2003-12-02 2005-07-14 Sooknanan Roy R. Selective terminal tagging of nucleic acids
US20120156729A1 (en) * 2003-12-02 2012-06-21 Sooknanan Roy R Selective terminal tagging of nucleic acids
US7754429B2 (en) * 2006-10-06 2010-07-13 Illumina Cambridge Limited Method for pair-wise sequencing a plurity of target polynucleotides
EP2280081A1 (en) * 2009-07-31 2011-02-02 Qiagen GmbH Method of normalized quantification of RNA
KR101599555B1 (ko) 2009-12-24 2016-03-03 두산인프라코어 주식회사 하이브리드용 전력 변환 장치
CA2811185C (en) 2010-09-21 2020-09-22 Population Genetics Technologies Ltd. Increasing confidence of allele calls with molecular counting
US10017807B2 (en) * 2013-03-15 2018-07-10 Verinata Health, Inc. Generating cell-free DNA libraries directly from blood
US10053725B2 (en) * 2013-04-23 2018-08-21 President And Fellows Of Harvard College In situ interaction determination
CA2930942A1 (en) * 2013-11-18 2015-05-21 Rubicon Genomics, Inc. Degradable adaptors for background reduction
CN104946737B (zh) * 2013-12-11 2019-02-22 安可济控股有限公司 用于检测罕见序列变体的组合物和方法
CN105793438B (zh) * 2013-12-15 2020-02-11 中央研究院 未知序列的双股线性核酸的全长扩增方法
ES2819277T3 (es) * 2014-02-11 2021-04-15 Hoffmann La Roche Secuenciación dirigida y filtrado de UID
EP3169799B1 (en) * 2014-07-15 2019-09-04 Qiagen Sciences, LLC Semi-random barcodes for nucleic acid analysis
AU2018254190B2 (en) 2017-04-17 2024-05-30 Guoliang Fu Methods, compositions, and kits for preparing nucleic acid libraries

Patent Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2007062495A1 (en) * 2005-11-30 2007-06-07 Roy Rabindranauth Sooknanan Selective terminal tagging of nucleic acids

Also Published As

Publication number Publication date
US11993805B2 (en) 2024-05-28
AU2018254190A1 (en) 2019-10-31
US20230121409A1 (en) 2023-04-20
CN120796437A (zh) 2025-10-17
JP7079029B2 (ja) 2022-06-01
WO2018193233A1 (en) 2018-10-25
EP3612642A1 (en) 2020-02-26
US12297484B2 (en) 2025-05-13
CA3060018A1 (en) 2018-10-25
AU2018254190B2 (en) 2024-05-30
EP3612642C0 (en) 2025-07-09
EP3612642B1 (en) 2025-07-09
US20250270621A1 (en) 2025-08-28
US11408025B2 (en) 2022-08-09
ES3035812T3 (en) 2025-09-09
US20200115736A1 (en) 2020-04-16
JP2020512845A (ja) 2020-04-30
US20240002906A1 (en) 2024-01-04
CN110832084A (zh) 2020-02-21

Similar Documents

Publication Publication Date Title
CN110832084B (zh) 用于制备核酸文库的方法、组合物和试剂盒
AU2022201907B2 (en) Method for identification and enumeration of nucleic acid sequence, expression, copy, or dna methylation changes, using combined nuclease, ligase, polymerase, and sequencing reactions
EP3143139B1 (en) Synthesis of double-stranded nucleic acids
US20240384261A1 (en) Methods, compositions, and kits for preparing sequencing library
CN107002290B (zh) 样品制备方法
AU2024285380A1 (en) Methods, compositions, and kits for preparing library and targeted sequencing
WO2025133584A1 (en) Tail sequence guided addition of adaptor
HK40057111A (zh) 生成双链衔接物的方法

Legal Events

Date Code Title Description
PB01 Publication
PB01 Publication
SE01 Entry into force of request for substantive examination
SE01 Entry into force of request for substantive examination
GR01 Patent grant
GR01 Patent grant