CA3060018A1 - Methods, compositions, and kits for preparing nucleic acid libraries - Google Patents

Methods, compositions, and kits for preparing nucleic acid libraries Download PDF

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Publication number
CA3060018A1
CA3060018A1 CA3060018A CA3060018A CA3060018A1 CA 3060018 A1 CA3060018 A1 CA 3060018A1 CA 3060018 A CA3060018 A CA 3060018A CA 3060018 A CA3060018 A CA 3060018A CA 3060018 A1 CA3060018 A1 CA 3060018A1
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CA
Canada
Prior art keywords
ato
sequence
target
primer
universal
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Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Pending
Application number
CA3060018A
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English (en)
French (fr)
Inventor
Thomas DUNWELL
Guoliang Fu
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
GENEFIRST Ltd
Original Assignee
GENEFIRST Ltd
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from GBGB1706059.1A external-priority patent/GB201706059D0/en
Priority claimed from GBGB1708384.1A external-priority patent/GB201708384D0/en
Priority claimed from GBGB1719114.9A external-priority patent/GB201719114D0/en
Application filed by GENEFIRST Ltd filed Critical GENEFIRST Ltd
Publication of CA3060018A1 publication Critical patent/CA3060018A1/en
Pending legal-status Critical Current

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Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6806—Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1034—Isolating an individual clone by screening libraries
    • C12N15/1093—General methods of preparing gene libraries, not provided for in other subgroups
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • C12Q1/6874—Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation
    • C—CHEMISTRY; METALLURGY
    • C40—COMBINATORIAL TECHNOLOGY
    • C40B—COMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
    • C40B50/00—Methods of creating libraries, e.g. combinatorial synthesis
    • C40B50/06—Biochemical methods, e.g. using enzymes or whole viable microorganisms

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  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Genetics & Genomics (AREA)
  • Analytical Chemistry (AREA)
  • Biochemistry (AREA)
  • General Engineering & Computer Science (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biotechnology (AREA)
  • Molecular Biology (AREA)
  • Microbiology (AREA)
  • General Health & Medical Sciences (AREA)
  • Biophysics (AREA)
  • Physics & Mathematics (AREA)
  • Immunology (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Biomedical Technology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Crystallography & Structural Chemistry (AREA)
  • Plant Pathology (AREA)
  • Medicinal Chemistry (AREA)
  • General Chemical & Material Sciences (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Enzymes And Modification Thereof (AREA)
CA3060018A 2017-04-17 2018-04-17 Methods, compositions, and kits for preparing nucleic acid libraries Pending CA3060018A1 (en)

Applications Claiming Priority (7)

Application Number Priority Date Filing Date Title
GB1706059.1 2017-04-17
GBGB1706059.1A GB201706059D0 (en) 2017-04-17 2017-04-17 Methods, compositions, and kits for preparing library and targeted sequencing
GBGB1708384.1A GB201708384D0 (en) 2017-05-25 2017-05-25 Methods, compositions, and kits for preparing library and targeted sequencing
GB1708384.1 2017-05-25
GB1719114.9 2017-11-17
GBGB1719114.9A GB201719114D0 (en) 2017-11-17 2017-11-17 Methods, compositions, and kits for preparing library and targeted sequencing
PCT/GB2018/051000 WO2018193233A1 (en) 2017-04-17 2018-04-17 Methods, compositions, and kits for preparing nucleic acid libraries

Publications (1)

Publication Number Publication Date
CA3060018A1 true CA3060018A1 (en) 2018-10-25

Family

ID=62089770

Family Applications (1)

Application Number Title Priority Date Filing Date
CA3060018A Pending CA3060018A1 (en) 2017-04-17 2018-04-17 Methods, compositions, and kits for preparing nucleic acid libraries

Country Status (8)

Country Link
US (4) US11408025B2 (https=)
EP (1) EP3612642B1 (https=)
JP (1) JP7079029B2 (https=)
CN (2) CN110832084B (https=)
AU (1) AU2018254190B2 (https=)
CA (1) CA3060018A1 (https=)
ES (1) ES3035812T3 (https=)
WO (1) WO2018193233A1 (https=)

Families Citing this family (21)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
AU2018254190B2 (en) 2017-04-17 2024-05-30 Guoliang Fu Methods, compositions, and kits for preparing nucleic acid libraries
CA3120713A1 (en) * 2018-11-21 2020-05-28 Avida Biomed, Inc. Methods for targeted nucleic acid library formation
US11390915B2 (en) * 2019-04-26 2022-07-19 New England Biolabs, Inc. Polynucleotide adapter design for reduced bias
CN114026249B (zh) 2019-06-20 2024-01-23 深圳华大生命科学研究院 基于rna样本构建文库的方法及应用
US20220356467A1 (en) * 2019-06-25 2022-11-10 Board Of Regents, The University Of Texas System Methods for duplex sequencing of cell-free dna and applications thereof
CN121344163A (zh) * 2020-01-16 2026-01-16 Dnae诊断有限公司 用于分离靶多核苷酸的组合物、试剂盒和方法
WO2021232023A2 (en) * 2020-05-15 2021-11-18 Swift Biosciences, Inc. Methods for ligation-coupled-pcr
MX2023001400A (es) * 2020-09-11 2023-04-25 Illumina Cambridge Ltd Metodos para enriquecer una secuencia diana a partir de una genoteca de secuenciación usando adaptadores de horquilla.
GB202108427D0 (en) 2021-06-14 2021-07-28 Fu Guoliang Methods, compositions, and kits for preparing sequencing library
CN113684249B (zh) * 2021-08-25 2024-10-22 广州达安基因股份有限公司 一种rna和dna二代测序文库的构建方法及二代测序盒
US20250354297A1 (en) * 2021-10-29 2025-11-20 Board Of Regents, The University Of Texas System Shielded small nucleotides for intracellular barcoding
AU2023221441B2 (en) * 2022-02-18 2026-04-09 Agilent Technologies, Inc. Systems and methods for targeted nucleic acid capture and barcoding
EP4490313A1 (en) * 2022-03-09 2025-01-15 New England Biolabs, Inc. Target enrichment
CN117487884B (zh) * 2022-08-01 2025-04-15 南京诺唯赞生物科技股份有限公司 一种高样品利用率的基于转座酶的测序文库构建方法及相关寡核苷酸
CN120603940A (zh) * 2022-11-11 2025-09-05 生米公司 用于处理和扩增核酸的方法和组合物
WO2024137316A1 (en) * 2022-12-23 2024-06-27 Foundation Medicine, Inc. Oligonucleotides and methods for capturing single-stranded templates and/or templates with 3' overhangs
GB202308392D0 (en) 2023-06-06 2023-07-19 Fu Guoliang Methods, compositions, and kits for preparing library and targeted sequencing
GB202319353D0 (en) 2023-12-17 2024-01-31 Fu Guoliang Tail sequence guided addition of adaptor
CN117701679B (zh) * 2024-02-06 2024-06-14 中国医学科学院基础医学研究所 一种基于5’连接的单链dna特异的高通量测序方法
WO2025184067A1 (en) * 2024-02-26 2025-09-04 Biomeme, Inc. Methods and compositions for processing and amplification of nucleic acids
WO2026050948A1 (zh) * 2024-09-04 2026-03-12 深圳华大生命科学研究院 核酸文库的构建方法及应用

Family Cites Families (16)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CA2501983A1 (en) * 2002-10-30 2004-05-27 Pamgene B.V. Improved methods for generating multiple rna copies
US20050153333A1 (en) * 2003-12-02 2005-07-14 Sooknanan Roy R. Selective terminal tagging of nucleic acids
US20120156729A1 (en) * 2003-12-02 2012-06-21 Sooknanan Roy R Selective terminal tagging of nucleic acids
ATE551349T1 (de) * 2005-11-30 2012-04-15 Epict Technologies Corp Methode unter verwendung von reversibel blockierten markierungsoligonukleotiden
US7754429B2 (en) * 2006-10-06 2010-07-13 Illumina Cambridge Limited Method for pair-wise sequencing a plurity of target polynucleotides
EP2280081A1 (en) * 2009-07-31 2011-02-02 Qiagen GmbH Method of normalized quantification of RNA
KR101599555B1 (ko) 2009-12-24 2016-03-03 두산인프라코어 주식회사 하이브리드용 전력 변환 장치
CA2811185C (en) 2010-09-21 2020-09-22 Population Genetics Technologies Ltd. Increasing confidence of allele calls with molecular counting
US10017807B2 (en) * 2013-03-15 2018-07-10 Verinata Health, Inc. Generating cell-free DNA libraries directly from blood
US10053725B2 (en) * 2013-04-23 2018-08-21 President And Fellows Of Harvard College In situ interaction determination
CA2930942A1 (en) * 2013-11-18 2015-05-21 Rubicon Genomics, Inc. Degradable adaptors for background reduction
CN104946737B (zh) * 2013-12-11 2019-02-22 安可济控股有限公司 用于检测罕见序列变体的组合物和方法
CN105793438B (zh) * 2013-12-15 2020-02-11 中央研究院 未知序列的双股线性核酸的全长扩增方法
ES2819277T3 (es) * 2014-02-11 2021-04-15 Hoffmann La Roche Secuenciación dirigida y filtrado de UID
EP3169799B1 (en) * 2014-07-15 2019-09-04 Qiagen Sciences, LLC Semi-random barcodes for nucleic acid analysis
AU2018254190B2 (en) 2017-04-17 2024-05-30 Guoliang Fu Methods, compositions, and kits for preparing nucleic acid libraries

Also Published As

Publication number Publication date
US11993805B2 (en) 2024-05-28
AU2018254190A1 (en) 2019-10-31
US20230121409A1 (en) 2023-04-20
CN120796437A (zh) 2025-10-17
JP7079029B2 (ja) 2022-06-01
WO2018193233A1 (en) 2018-10-25
EP3612642A1 (en) 2020-02-26
US12297484B2 (en) 2025-05-13
AU2018254190B2 (en) 2024-05-30
EP3612642C0 (en) 2025-07-09
EP3612642B1 (en) 2025-07-09
US20250270621A1 (en) 2025-08-28
US11408025B2 (en) 2022-08-09
ES3035812T3 (en) 2025-09-09
US20200115736A1 (en) 2020-04-16
JP2020512845A (ja) 2020-04-30
CN110832084B (zh) 2025-06-20
US20240002906A1 (en) 2024-01-04
CN110832084A (zh) 2020-02-21

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