CN107533587B - 用于估计样本中的分类单位内的微生物的量的方法和装置 - Google Patents

用于估计样本中的分类单位内的微生物的量的方法和装置 Download PDF

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CN107533587B
CN107533587B CN201680020777.1A CN201680020777A CN107533587B CN 107533587 B CN107533587 B CN 107533587B CN 201680020777 A CN201680020777 A CN 201680020777A CN 107533587 B CN107533587 B CN 107533587B
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CN107533587A (zh
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林志衡
S·卡玛拉卡兰
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Koninklijke Philips NV
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    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/20—Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
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    • Y02A—TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
    • Y02A90/00—Technologies having an indirect contribution to adaptation to climate change
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  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
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CN201680020777.1A 2015-04-09 2016-04-08 用于估计样本中的分类单位内的微生物的量的方法和装置 Expired - Fee Related CN107533587B (zh)

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US201562145026P 2015-04-09 2015-04-09
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PCT/EP2016/057799 WO2016162504A1 (en) 2015-04-09 2016-04-08 Method and apparatus for estimating the quantity of microorganisms within a taxonomic unit in a sample

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US (1) US10998083B2 (https=)
EP (1) EP3281136B1 (https=)
JP (1) JP7023711B2 (https=)
CN (1) CN107533587B (https=)
AU (2) AU2016245213A1 (https=)
BR (1) BR112017021318A2 (https=)
CA (1) CA2981913A1 (https=)
MX (1) MX391844B (https=)
RU (1) RU2751241C2 (https=)
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WO2018160899A1 (en) * 2017-03-01 2018-09-07 Bluedot Llc Systems and methods for metagenomic analysis
CN110277139B (zh) * 2019-06-18 2023-03-21 江苏省产品质量监督检验研究院 一种基于互联网的微生物限度检查系统及方法
CN113284560B (zh) * 2021-04-28 2022-05-17 广州微远基因科技有限公司 病原检测背景微生物判断方法及应用
CN114334004B (zh) * 2021-12-04 2024-03-15 江苏先声医学诊断有限公司 一种病原微生物快速比对鉴定方法及其应用
CN115841847B (zh) * 2022-12-12 2023-05-12 哈尔滨因极科技有限公司 一种微生物信息测定及提取系统和方法

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EP2390810A2 (en) * 2010-05-26 2011-11-30 Tata Consultancy Services Limited Taxonomic classification of metagenomic sequences
KR20120139908A (ko) * 2011-06-20 2012-12-28 가톨릭대학교 산학협력단 섬망 고위험군 예측모형 시스템 및 그 예측모형 방법, 및 그것을 이용한 섬망 고위험군 예측 시스템
CN103627800A (zh) * 2013-11-14 2014-03-12 浙江天科高新技术发展有限公司 环境微生物快速检测方法
CN103827889A (zh) * 2011-07-19 2014-05-28 奥维茨奥成像系统公司 用于检测和/或分类细胞样品中的癌细胞的方法和系统
CN104252627A (zh) * 2013-06-28 2014-12-31 广州华多网络科技有限公司 Svm分类器训练样本获取方法、训练方法及其系统

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US6780602B2 (en) * 2001-11-01 2004-08-24 Microbiosystems, Limited Partnership Taxonomic identification of pathogenic microorganisms and their toxic proteins
CN104250661A (zh) * 2008-07-10 2014-12-31 塔康特精确有限公司 可培养的微生物细胞的数目的测定方法
WO2014138119A2 (en) * 2013-03-04 2014-09-12 Fry Laboratories, LLC Method and kit for characterizing microorganisms

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EP2390810A2 (en) * 2010-05-26 2011-11-30 Tata Consultancy Services Limited Taxonomic classification of metagenomic sequences
KR20120139908A (ko) * 2011-06-20 2012-12-28 가톨릭대학교 산학협력단 섬망 고위험군 예측모형 시스템 및 그 예측모형 방법, 및 그것을 이용한 섬망 고위험군 예측 시스템
CN103827889A (zh) * 2011-07-19 2014-05-28 奥维茨奥成像系统公司 用于检测和/或分类细胞样品中的癌细胞的方法和系统
CN104252627A (zh) * 2013-06-28 2014-12-31 广州华多网络科技有限公司 Svm分类器训练样本获取方法、训练方法及其系统
CN103627800A (zh) * 2013-11-14 2014-03-12 浙江天科高新技术发展有限公司 环境微生物快速检测方法

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A comparative evaluation of sequence classification programs;Adam L Bazinet 等;《BMC》;20120510;第1-13页 *
Kraken: ultrafast metagenomic sequence classification using exact alignments;Derrick E Wood 等;《Genome Biology》;20140303;第1-12页 *
Reconstructing the Genomic Content of Microbiome Taxa through Shotgun Metagenomic Deconvolution;Rogan Carr 等;《PLOS》;20131017;第1-15页 *
The truth about metagenomics: quantifying and counteracting bias in 16S rRNA studies;J Paul Brooks 等;《BMC》;20150321;第1-14页 *
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EP3281136A1 (en) 2018-02-14
BR112017021318A2 (pt) 2018-06-26
JP7023711B2 (ja) 2022-02-22
AU2021212155B2 (en) 2023-06-29
RU2017138867A3 (https=) 2020-06-26
MX391844B (es) 2025-03-21
MX2017012758A (es) 2018-01-30
US20180129777A1 (en) 2018-05-10
AU2016245213A1 (en) 2017-11-23
RU2017138867A (ru) 2019-05-13
CA2981913A1 (en) 2016-10-13
AU2021212155A1 (en) 2021-08-26
WO2016162504A1 (en) 2016-10-13
JP2018518725A (ja) 2018-07-12
RU2751241C2 (ru) 2021-07-12
EP3281136B1 (en) 2024-06-05
US10998083B2 (en) 2021-05-04
CN107533587A (zh) 2018-01-02

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