CN107312761A - A kind of AsCpf1 mutant proteins, encoding gene, recombinant expression carrier and preparation method and application - Google Patents

A kind of AsCpf1 mutant proteins, encoding gene, recombinant expression carrier and preparation method and application Download PDF

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CN107312761A
CN107312761A CN201710586386.2A CN201710586386A CN107312761A CN 107312761 A CN107312761 A CN 107312761A CN 201710586386 A CN201710586386 A CN 201710586386A CN 107312761 A CN107312761 A CN 107312761A
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Abstract

The invention discloses a kind of AsCpf1 mutant proteins, encoding gene, recombinant expression carrier and preparation method and application.The AsCpf1 mutant proteins are the protein of the amino acid sequence composition shown in sequence 1;Its encoding gene is the DNA molecular shown in sequence 2;Recombinant expression carrier containing the encoding gene is to enter performing PCR amplification with the AsCpf1 (S589Q/P711T) shown in sequence 2 for template design primer, then the PCR primer of purifying is obtained between the multiple cloning sites NcoI and XhoI of seamless cloning process insertion pET15b carriers;The AsCpf1 mutant proteins and its encoding gene, recombinant expression carrier of the present invention can be used for gene editing primary T cells PD 1.It can realize that primary T cells PD's 1 strikes drop using the AsCpf1 mutant proteins of the present invention, be that the genes of gene editing T cell PD 1 and cancer immunotherapy lay the first stone.

Description

A kind of AsCpf1 mutant proteins, encoding gene, recombinant expression carrier and its preparation side Method and application
Technical field
The invention belongs to Biochemistry and Molecular Biology technical field, and in particular to a kind of AsCpf1 mutant proteins, Encoding gene, recombinant expression carrier and preparation method and application.
Background technology
Gene editing is a kind of technology accurately modified in genomic level, can complete gene site-directed delete and dash forward Change, gene site-directed insertion mutation, many site simultaneous mutations and small fragment delete mistake etc..Gene editing technology can be used for gene function And disease pathogenesis research, structure disease animal model, biological therapy, heredity and tumor-related illness research, integration virus Disease research and improvement farming animals herd species.CRISPR-Cas9 is after " zinc finger endonuclease (ZFN) ", " class activating transcription factor The third generation genome fixed point editing technique occurred after effector nuclease (TALEN) ".
AsCpf1 (Acidaminococc μ s sp.Cpf1) is a kind of V-type CRISPR-Cas9 intra-system handoffs of RNA mediations Enzyme, in the presence of single-stranded crRNA (CRISPR RNA), AsCpf1 recognizes the 5 '-TTTN-3 ' PAM of double-stranded DNA (protospacer adjacent motif), and in the 18th base and incomplementarity chain with crRNA complementary strands of double-stranded DNA The 23rd base at DNA is cut.Compared with CRISPR-Cas9 gene editing systems, CRISPR-AsCpf1 systems tool TracrRNA (trans-activating crRNA), cutting targeting DNA efficiency highs, cutting is not needed to produce cohesive end etc. Feature, is the potential, instrument available for eukaryotic gene group editor.
PD-1 (programmed death 1), programmed death acceptor is a kind of important immunosuppression molecule, is CD28 superfamily members, are initially to clone to come from the mouse Tcell hybridoma 2B4.11 of apoptosis.It is used as cancer immunotherapy Important target spot, the immunological regulation using the PD-1 genes of gene editing T cell as target spot is to antitumor, anti-infective, anti-autoimmunity Property disease and organ transplant survival etc. have important meaning.
The content of the invention
An object of the present invention is to provide a kind of AsCpf1 mutant proteins, the PD-1 genes available for editor's T cell.
To achieve the above object, the AsCpf1 mutant proteins that the present invention is provided, its amino acid sequence such as SEQ ID NO:1 It is shown.
The second object of the present invention is to provide a kind of restructuring AsCpf1 gene mutation bodies, and carrying out structure to AsCpf1 genes changes Make, available for encoding above-mentioned AsCpf1 mutant proteins.
To achieve the above object, a kind of restructuring AsCpf1 gene mutation body AsCpf1 (S589Q/ that the present invention is provided P711T), its nucleotide sequence such as SEQ ID NO:Shown in 2.AsCpf1 (S589Q/P711T) is close to the progress of AsCpf1 genes Numeral optimizes, and two amino acid sites (S598Q and P711T) mutation in wild type AsCpf1 is obtained.
The third object of the present invention is to provide a kind of recombinant expression carrier of the AsCpf1 gene mutation bodies containing restructuring.
To achieve the above object, the recombinant expression carrier pET15b-AsCpf1 (S589Q/P711T) that the present invention is provided, be With SEQ ID NO:AsCpf1 (S589Q/P711T) shown in 2 enters performing PCR amplification for template design primer, then by the PCR of purifying Product is inserted with seamless cloning process to be obtained between the multiple cloning sites NcoI and XhoI of pET15b carriers.
The fourth object of the present invention is to provide the preparation method of AsCpf1 mutant proteins, and the AsCpf1 for obtaining high-purity dashes forward Misfolded proteins.
To achieve the above object, the preparation method for the AsCpf1 mutant proteins that the present invention is provided, comprises the following steps:
1. the structure of AsCpf1 mutant protein prokaryotic expression carriers is encoded:With the AsCpf1 (S589Q/P711T) of synthesis Genomic DNA is template, expands AsCpf1 (S589Q/P711T) coded sequence with PCR method, obtained PCR primer is entered Row purifying, between multiple cloning sites NcoI and XhoI that pET15b carriers are inserted with seamless cloning process, obtains recombination expression and carries Body, it is all correct through sequence verification reading frame and DNA sequence dna, i.e., successfully construct the protokaryon of the AsCpf1 gene mutation bodies containing restructuring Expression vector, is named as pET15b-AsCpf1 (S589Q/P711T);
2. the expression of AsCpf1 mutant proteins:Prokaryotic expression carrier pET15b-AsCpf (S589Q/P711T) is transferred to Expressive host bacterium Escherichiacoli BL21 (DE3), picking monoclonal is seeded to fresh ampicillin containing 50mg/l LB culture mediums, through 37 DEG C of shaking table cultures to OD600For 0.6, the final concentration of 0.6mM of addition IPTG induction AsCpf1 (S589Q/ P711T expression);
3. the purifying of AsCpf1 mutant proteins:The cell of one liter of zymotic fluid is collected, and with the Buffer A of 40ml ice baths It is resuspended, ice-bath ultrasonic cell lysis, centrifuging and taking supernatant, supernatant passes through Ni-IDA posts;Loading is finished is washed with 50ml Buffer E Ni-IDA posts;50ml Buffer G elute Ni-IDA posts, are in charge of collection;The destination protein being eluted to is crossed into CM ion columns; 100ml Buffer D wash CM ion columns;10ml Buffer B elute CM ion columns, are in charge of collection;It is soft using specialty analysis Part Grab-it 2.5 analyzes TAT-As-cpf1 purity of protein;The AsCpf1 (S589Q/P711T) of elution is saturating by albumen after merging Analysis is to 20mM Tris, in 50mM NaCl pH7.5,20%glycerol;Wherein, Buffer A composition is:20mM Tris- HCl, 50mM NaCl, 1%Triton-100,20%glycerol pH7.5;Buffer E composition is:20mM Tris-HCl PH7.5,2M NaCl, 0.1%TritonX-100,20%glycerol;Buffer G composition is:20mM Tris-HCl PH7.5,50mM NaCl, 0.1%TritonX-100,500mM imidazoles, 20%glycerol;Buffer D composition is:20mM Tris-HCl pH7.5,50mM NaCl, 0.1%TritonX-100,20%glycerol;Buffer B composition is:20mM Tris-HCl pH7.5,50mM NaCl, 0.1%TritonX-100,20%glycerol.
The present invention is carried AsCpf1 (S589Q/P711T) gene clonings of codon optimization to pET15b by vector construction In body, AsCpf1 (S589Q/P711T) expressing quantities in Escherichia coli can reach 18%, solubility under cryogenic Reach 95%.
The fifth object of the present invention is to provide AsCpf1 mutant proteins, restructuring AsCpf1 gene mutation bodies and recombination expression Application of the carrier in terms of gene editing primary T cells PD-1.
The sixth object of the present invention is to provide AsCpf1 mutant protein editor's primary T cells PD-1 method, can more have Effect, easily editor's primary T cells PD-1 gene.
Specifically include following steps:
(1) primary T cells PD-1 Gene Partials sequence amplification
Primary T cells PD-1 genomic DNAs using extraction is templates, and PCR is expanded and reclaimed amplified fragments, PCR amplifications institute It is with forward primer:5’-ACTCCCCAGACAGGCCCTG-3’(SEQ ID NO:6), reverse primer is:5’- CAGGGGCTGGCCGGTGCG-3’(SEQ ID NO:7);PCR reaction systems are:Genomic DNA template 100ng, 20 μM of forward directions Primer 1 μ l, 20 μM of μ l of 1 μ l, 2X Ultra Pfu Mix of reverse primer 25, plus ddH2O to the μ l of cumulative volume 50;PCR reaction conditions For:94 DEG C of thermal denaturations 5 minutes, 56 DEG C are annealed 30 seconds, and 72 DEG C extend 1 minute, and 30 circulations are carried out altogether;
(2) AsCpf1 mutant proteins In vitro digestion PD-1
Take 1 μ g steps (1) reclaim PD-1 products, 1 μ l purifying AsCpf1 mutant proteins, 1 μ g synthesis crRNA, 2 μ l 10*Reaction Buffer, are configured to after 20 μ l In vitro digestion reaction systems, 37 DEG C of water-bath 30min, and 2% agarose coagulates Gel electrophoresis detection cutting;Wherein 10*Reaction B μ ffer composition is:500mM KAc, 200mM Tris- acetic acid, 100mM Mg(Ac)2、1mg/ml BSA pH7.9@25℃;
(3) Western Blotting detect after AsCpf1 mutant proteins processing primary T cells that PD-1 expressions become Change
Take 1 × 106Individual primary T cells PD-1, adds the AsCpf1 mutant proteins of 20 μ g purifying, 10 μ g synthesis CrRNA mixes ice bath, and electric conversion instrument, which is clicked on to spread after conversion, extracts albumen after 6 orifice plates, 72h, Western Blotting detections PD- 1 protein expression level changes.
The AsCpf1 mutant proteins cutting efficiency that present invention purifying is obtained is high, the tracrRNA that cutting need not be complicated, It is easy to operate, it is cost-effective;It is found that two new PD-1 gene editings sites;It can be realized using AsCpf1 mutant proteins Primary T cells PD-1's strikes drop, is that gene editing T cell PD-1 genes and cancer immunotherapy lay the first stone.
Brief description of the drawings
Fig. 1 is recombinant expression carrier pET15b-AsCpf1 (S589Q/P711T) plasmid map;
Fig. 2 is the SDS-PAGE analyses for recombinating AsCpf1 (S589Q/P711T) protein expression:Swimming lane M is albumen marker (KD) before, swimming lane 1 is IPTG inductions, swimming lane 2 and 3 is that the whole bacterial protein of AsCpf1 (S589Q/P711T) after IPTG is induced is expressed;
Fig. 3 is the AsCpf1 (S589Q/P711T) of Ni-IDA posts after purification SDS-PAGE (13%) analyses:Swimming lane 1:It is super Sound supernatant;Swimming lane 2:Outflow;Swimming lane 3:50mM imidazoles is eluted;Swimming lane 4:500mM imidazoles elution 1;Swimming lane 5:500mM imidazoles is eluted 2;Swimming lane 6:Residual;Swimming lane M is albumen marker (KD);
Fig. 4 is the AsCpf1 (S589Q/P711T) of CM posts after purification SDS-PAGE (13%) analyses:Swimming lane 1:Ni-IDA Purify AsCpf1 (S589Q/P711T);Swimming lane 2:CM flows out;Swimming lane 3:CM elutions 1;Swimming lane 4:CM elutions 2;Swimming lane 5:CM is eluted 3;Swimming lane 6:Residual;Swimming lane M is albumen marker (KD);
Fig. 5 is that the AsCpf1 (S589Q/P711T) of purifying and wild type AsCpf1 (WT) cleavage activity in vitro contrast (external The greedy copper bacterium copR genetic fragments of cutting):
Swimming lane M:DL2000;Swimming lane 1:copR+AsCpf1(WT);Swimming lane 2:copR+crRNA;Swimming lane 3:copR+AsCpf1 (WT)+crRNA;Swimming lane 4:copR+AsCpf1(S589Q)+crRNA;Swimming lane 5:copR+AsCpf1(P117T)+crRNA;Swimming lane 6:copR+AsCpf1(S589Q/P711T)+crRNA;
Fig. 6 is AsCpf1 (S589Q/P711T) the In vitro digestions PD-1 of purifying:Swimming lane M is DNA marker (DL2000); Swimming lane 1:PD-1+AsCpf1(S589Q/P711T);Swimming lane 2:PD-1+AsCpf1(S589Q/P711T)+crRNA1;Swimming lane 3: PD-1+AsCpf1(S589Q/P711T)+crRNA2;Swimming lane 4:PD-1+AsCpf1(S589Q/P711T)+crRNA3;
Fig. 7 is that AsCpf1 (S589Q/P711T) is handled after primary T cells, Western Blotting detection PD-1 expression Level:
Swimming lane 1:Con groups 1 (primary T cells are without any processing);Swimming lane 2:Con groups 2 (primary T cells+shock treatment); Swimming lane 3:Con groups 3 (primary T cells+AsCpf1 (S589Q/P711T)+shock treatment);Swimming lane 4:CrRNA1 (primary T cells+ AsCpf1 (S589Q/P711T)+crRNA1+ shock treatments);Swimming lane 5:CrRNA2 (primary T cells+AsCpf1 (S589Q/ P711T)+crRNA2+ shock treatments);Swimming lane 6:CrRNA3 (primary T cells+AsCpf1 (S589Q/P711T)+crRNA3+ electricity Hit processing).
Embodiment
Below in conjunction with the accompanying drawings and specific embodiment to invention be described in further detail.
Experimental method used is conventional method unless otherwise specified in following examples.
Material, reagent used etc., unless otherwise specified, are commercially obtained in following examples.
Embodiment 1:AsCpf1 optimization design and synthesis
Sequence first to wild type AsCpf1 carries out following optimize:
5 ' ends add cell-penetrating peptide TAT coded sequences, and coded sequence is TACGGTCGTAAAAAACGTCGTCAGCGTCGTCGT (SEQ ID NO:3).
3 ' ends add nuclear localization sequence (NLS), and coded sequence is:AAAAGGCCGGCGGCCACGAAAAAGGCCGGCCAGG CAAAAAAGAAAAAGGGATCC(SEQ ID NO:4).
3 ' ends add 6*His sequence labels, and coded sequence is:CATCATCATCATCATCAC(SEQ ID NO:5).
Two amino acid sites in wild type AsCpf1 are mutated again:S598Q and P711T.
AsCpf1 genes carry out full genome synthesis after codon optimization, and commission Shanghai JiMa pharmacy Technology Co., Ltd closes Into being named as AsCpf1 (S589Q/P711T).The AsCpf1 (S589Q/P711T) of synthesis nucleotide sequence such as SEQ ID NO:Shown in 2.
Embodiment 2:Prokaryotic expression carrier pET15b-AsCpf1 (S589Q/P711T) structure
AsCpf1 (S589Q/P711T) genomic DNAs using synthesis expand AsCpf1 as template with PCR method (S589Q/P711T) coded sequence, the forward primer of design is:
5’-GTTTAACTTTAAGAAGGAGATATACCATGTACGGTCGTAAAAAACGTCGTCAGCGTCGTCGTACAC AGTTCGAGGGCTTTAC-3’(SEQ ID NO:6)
Reverse primer is:
5’-TCGGGCTTTGTTAGCAGCCGGATCCTCGAGTTAGTGATGATGATGATGATGG-3’(SEQ ID NO: 7)
PCR reaction systems are:AsCpf1 (S589Q/P711T) template 50ng of synthesis, the μ l of forward primer (20 μM) 1, instead To the μ l of 1 μ l, 2X Ultra Pfu Mix of primer (20 μM) 25, plus ddH2O to the μ l of cumulative volume 50;
PCR amplification conditions are:94 DEG C of thermal denaturations 5 minutes, 60 DEG C are annealed 30 seconds, and 72 DEG C extend 5 minutes, carry out 30 altogether and follow Ring.
Obtained PCR primer is purified, pET15b carriers (being purchased from Novagen companies) are inserted with seamless cloning process Multiple cloning sites NcoI and XhoI between, obtain recombinant expression carrier.DNA sequencing is carried out to recombinant expression carrier, it is analyzed The correctness of reading frame and coded sequence.
By AsCpf1 (S589Q/P711T) gene clonings of codon optimization into pET15b carriers, recombinant plasmid is through life Work bioengineering (Shanghai) limited company sequence verification, reading frame and DNA sequence dna are all correct, i.e., successfully construct containing weight The prokaryotic expression carrier of group AsCpf1 gene mutation bodies, is named as pET15b-AsCpf1 (S589Q/P711T), its sketch referring to Fig. 1.
Embodiment 3:The expression and purifying of AsCpf1 mutant proteins
(1) expression of AsCpf1 mutant proteins
Prokaryotic expression carrier pET15b-AsCpf (S589Q/P711T) and control vector pET15b are transferred to expression place respectively Main bacterium Escherichiacoli BL21 (DE3) (being purchased from New England Biolabs companies), picking monoclonal is seeded to newly Fresh LB culture mediums (ampicillin containing 50mg/l).Treat bacterium length to OD600For 0.6 or so, it is separately added into final concentration of 0.6mM IPTG (isopropyl-β-D-thiogalactoside) induction AsCpf1 (S589Q/P711T) expression.Induction is two small When after collect thalline, the mycoprotein sample after processing uses gel imaging system UVP through 13%SDS-PAGE electrophoresis White/ultraviolet transilluminator (being purchased from Upland companies of the U.S.) are to the gel of coomassie brilliant blue staining Record is scanned, the ratio of bacterial protein is accounted for using specialty analysis software Grab-it 2.5 and Gelwork analysis purpose albumen Example.
In the application, solubility is defined as:Soluble destination protein/general purpose albumen × 100%.In IPTG inductions Afterwards, occur in that an about 155kD protein band, and theoretical molecular size coincide, through gel image scanning gray analysis, AsCpf1 (S589Q/P711T) albumen accounts for 18% (Fig. 2) of bacterial protein, and solubility reaches 95%.
(2) purifying of AsCpf1 mutant proteins
Collect the cell of one liter of zymotic fluid, and with the Buffer A of 40ml ice baths (20mM Tris-HCl, 50mM NaCl, 1%Triton-100,20%glycerol pH7.5) it is resuspended, ice-bath ultrasonic cell lysis, centrifuging and taking supernatant, supernatant passes through Ni- IDA posts;Loading finish with 50ml Buffer E (20mM Tris-HCl pH7.5,2M NaCl, 0.1%TritonX-100, 20%glycerol) wash Ni-IDA posts;50ml Buffer G (20mM Tris-HCl pH7.5,50mM NaCl, 0.1% TritonX-100,500mM imidazoles, 20%glycerol) elution Ni-IDA posts, it is in charge of collection;By the destination protein mistake being eluted to CM ion columns;100ml Buffer D (20mM Tris-HCl pH7.5,50mM NaCl, 0.1%TritonX-100,20% Glycerol CM ion columns) are washed;10ml Buffer B (20mM Tris-HCl pH7.5,50mM NaCl, 0.1% TritonX-100,20%glycerol) elution CM ion columns, it is in charge of collection.Use 2.5 points of specialty analysis software Grab-it It is 90% to analyse TAT-As-cpf1 purity of protein.The AsCpf1 (S589Q/P711T) of elution dialyses albumen to 20mM after merging In Tris, 50mM NaCl pH7.5,20%glycerol.
The AsCpf1 (S589Q/P711T) of Ni-IDA posts after purification SDS-PAGE (13%) analyses are as shown in Figure 3;CM posts SDS-PAGE (13%) analyses of AsCpf1 (S589Q/P711T) after purification are as shown in Figure 4.
Embodiment 4:The AsCpf1 mutant proteins of purifying are contrasted with wild type AsCpf1 (WT) cleavage activity
(1) copR gene orders are expanded
Greedy copper bacterium is extracted from bitumen using conventional method, and using the greedy copper bacterium genomic DNA of extraction as template, PCR is expanded and is reclaimed copR genetic fragments, and PCR amplifications forward primer used is:
5’-ATGAAATTGCTGGTAGTCGAAGA-3’(SEQ ID NO:8), reverse primer is:5’- TCAGTCGCCTTCCTCCGGAT-3’(SEQ ID NO:9).PCR amplification system is:Genomic DNA template 100ng, forward direction is drawn The μ l of thing (20 μM) 1,1 μ l, 2X Ultra Pfu Mix of reverse primer (20 μM) 25 μ l, plus ddH2O to the μ l of cumulative volume 50;PCR is anti- The condition is answered to be:94 DEG C of thermal denaturations 10 minutes, 58 DEG C are annealed 30 seconds, and 72 DEG C extend 1 minute, and 35 circulations are carried out altogether.PCR amplification productions Thing is reclaimed, and is tested for AsCpf1 (S589Q/P711T) and wild type AsCpf1 (WT) In vitro digestion.
(2) cleavage activity is contrasted
What copR products, the AsCpf1 mutant proteins of 1 μ l purifying or AsCpf1 (WT), the 1 μ g for taking 1 μ g to reclaim were synthesized CrRNA, 2 μ l 10*Reaction Buffer, are configured to after 20 μ l In vitro digestion reaction systems, 37 DEG C of water-bath 30min, 2% fine jade Sepharose electrophoresis detection is cut;Wherein 10*Reaction Buffer composition is:500mM KAc, 200mM Tris- vinegar Acid, 100mM Mg (Ac)2、1mg/ml BSA pH7.9@25℃。
Wherein crRNA commissions Shanghai JiMa pharmacy Technology Co., Ltd synthesizes, and its sequence is:
5’-CGCGGGCCAGCAGTTCGGCAAAGGATCTACAACAGTAGAAATTCCCTATAGTGAGTCGTATTAATT TC-3’(SEQ ID NO:10)
As a result In vitro digestion experimental result as shown in figure 5, show AsCpf1 mutant proteins compared to wild type AsCpf1 (WT), cleavage activity is significantly improved.
Embodiment 5:AsCpf1 mutant protein editor's primary T cells PD-1
(1) PD-1 Gene Partials sequence amplification
Primary T cells are separated from human peripheral using conventional method, and using the primary T cells genomic DNA of extraction as Template, PCR is expanded and is reclaimed amplified fragments, and PCR amplifications forward primer used is:5’-ACTCCCCAGACAGGCCCTG-3’ (SEQ ID NO:11), reverse primer is:5’-CAGGGGCTGGCCGGTGCG-3’(SEQ ID NO:12).PCR amplification system: Genomic DNA template 100ng, the μ l of forward primer (20 μM) 1, the μ l of 1 μ l, 2X Ultra Pfu Mix of reverse primer (20 μM) 25, Plus ddH2O to the μ l of cumulative volume 50;PCR reaction conditions are:94 DEG C of thermal denaturations 5 minutes, 56 DEG C are annealed 30 seconds, and 72 DEG C extend 1 minute, 30 circulations are carried out altogether.Pcr amplification product is reclaimed, for the experiment of AsCpf1 (S589Q/P711T) In vitro digestion.
(2) AsCpf1 (S589Q/P711T) In vitro digestions PD-1
Take PD-1 products, crRNA, the 2 μ l of AsCpf1 (S589Q/P711T), 1 μ the g synthesis of 1 μ l purifying that 1 μ g are reclaimed 10*Reaction B μ ffer, are configured to after 20 μ l In vitro digestion reaction systems, 37 DEG C of water-bath 30min, 2% Ago-Gel electricity Swimming detection cutting.Wherein 10*Reaction B μ ffer composition is:500mM KAc, 200mM Tris- acetic acid, 100mM Mg (Ac)2、1mg/ml BSA pH7.9@25℃。
The crRNA of 3 targeting different locis is devised according to PD-1 gene orders, the lucky agate pharmaceutical technology in commission Shanghai is limited Company synthesizes:
crRNA1:AAUUUCUACUCUUGUAGAUGCACGAAGCUCUCCGAUGUGUUGG(SEQ ID NO:13);
crRNA2:AAUUUCUACUCUUGUAGAUAUCUGCGCCUUGGGGGCCAGGGAG(SEQ ID NO:14);
crRNA3:AAUUUCUACUCUUGUAGAUGAACUGGCCGGCUGGCCUGGGUGA(SEQ ID NO:15);
In vitro digestion experiment, experimental result are carried out to PD-1 using the AsCpf1 mutant proteins of purifying as shown in fig. 6, knot Fruit shows that 3 crRNA can mediate AsCpf1 (S589Q/P711T) to cut PD-1, illustrates AsCpf1 (S589Q/ P711T) recognize and cut PD-1 efficiency highs.
(3) Western Blotting detect after AsCpf1 mutant proteins processing primary T cells that PD-1 expressions become Change
Take 1 × 106Individual primary T cells PD-1, adds the AsCpf1 mutant proteins of 20 μ g purifying, 10 μ g synthesis CrRNA mixes ice bath, electric conversion instrument (BIO-RAD MicroPilserTM) click on conversion after spread 6 orifice plates, 72h after extract albumen Western Blotting detection PD-1 protein expression level changes.
Primary T cells are handled respectively with 3 crRNA of design synthesis, Western Blotting testing results As shown in fig. 7, after crRNA2 and crRNA3 processing primary T cells, PD-1 protein expression levels are substantially reduced, show that AsCpf1 dashes forward Misfolded proteins and two targeting crRNA for PD-1 genes of design can effectively strike drop primary T cells PD-1 expression.
<110>Jiangsu Pu Bo bio tech ltd
<120>A kind of AsCpf1 mutant proteins, encoding gene, recombinant expression carrier and preparation method and application
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<210> 1
<211> 1342
<212> PRT
<213>Artificial sequence
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Gly Phe Thr Asn Leu Tyr Gln Val Ser Lys Thr Leu Arg Phe Glu Leu
20 25 30
Ile Pro Gln Gly Lys Thr Leu Lys His Ile Gln Glu Gln Gly Phe Ile
35 40 45
Glu Glu Asp Lys Ala Arg Asn Asp His Tyr Lys Glu Leu Lys Pro Ile
50 55 60
Ile Asp Arg Ile Tyr Lys Thr Tyr Ala Asp Gln Cys Leu Gln Leu Val
65 70 75 80
Gln Leu Asp Trp Glu Asn Leu Ser Ala Ala Ile Asp Ser Tyr Arg Lys
85 90 95
Glu Lys Thr Glu Glu Thr Arg Asn Ala Leu Ile Glu Glu Gln Ala Thr
100 105 110
Tyr Arg Asn Ala Ile His Asp Tyr Phe Ile Gly Arg Thr Asp Asn Leu
115 120 125
Thr Asp Ala Ile Asn Lys Arg His Ala Glu Ile Tyr Lys Gly Leu Phe
130 135 140
Lys Ala Glu Leu Phe Asn Gly Lys Val Leu Lys Gln Leu Gly Thr Val
145 150 155 160
Thr Thr Thr Glu His Glu Asn Ala Leu Leu Arg Ser Phe Asp Lys Phe
165 170 175
Thr Thr Tyr Phe Ser Gly Phe Tyr Glu Asn Arg Lys Asn Val Phe Ser
180 185 190
Ala Glu Asp Ile Ser Thr Ala Ile Pro His Arg Ile Val Gln Asp Asn
195 200 205
Phe Pro Lys Phe Lys Glu Asn Cys His Ile Phe Thr Arg Leu Ile Thr
210 215 220
Ala Val Pro Ser Leu Arg Glu His Phe Glu Asn Val Lys Lys Ala Ile
225 230 235 240
Gly Ile Phe Val Ser Thr Ser Ile Glu Glu Val Phe Ser Phe Pro Phe
245 250 255
Tyr Asn Gln Leu Leu Thr Gln Thr Gln Ile Asp Leu Tyr Asn Gln Leu
260 265 270
Leu Gly Gly Ile Ser Arg Glu Ala Gly Thr Glu Lys Ile Lys Gly Leu
275 280 285
Asn Glu Val Leu Asn Leu Ala Ile Gln Lys Asn Asp Glu Thr Ala His
290 295 300
Ile Ile Ala Ser Leu Pro His Arg Phe Ile Pro Leu Phe Lys Gln Ile
305 310 315 320
Leu Ser Asp Arg Asn Thr Leu Ser Phe Ile Leu Glu Glu Phe Lys Ser
325 330 335
Asp Glu Glu Val Ile Gln Ser Phe Cys Lys Tyr Lys Thr Leu Leu Arg
340 345 350
Asn Glu Asn Val Leu Glu Thr Ala Glu Ala Leu Phe Asn Glu Leu Asn
355 360 365
Ser Ile Asp Leu Thr His Ile Phe Ile Ser His Lys Lys Leu Glu Thr
370 375 380
Ile Ser Ser Ala Leu Cys Asp His Trp Asp Thr Leu Arg Asn Ala Leu
385 390 395 400
Tyr Glu Arg Arg Ile Ser Glu Leu Thr Gly Lys Ile Thr Lys Ser Ala
405 410 415
Lys Glu Lys Val Gln Arg Ser Leu Lys His Glu Asp Ile Asn Leu Gln
420 425 430
Glu Ile Ile Ser Ala Ala Gly Lys Glu Leu Ser Glu Ala Phe Lys Gln
435 440 445
Lys Thr Ser Glu Ile Leu Ser His Ala His Ala Ala Leu Asp Gln Pro
450 455 460
Leu Pro Thr Thr Leu Lys Lys Gln Glu Glu Lys Glu Ile Leu Lys Ser
465 470 475 480
Gln Leu Asp Ser Leu Leu Gly Leu Tyr His Leu Leu Asp Trp Phe Ala
485 490 495
Val Asp Glu Ser Asn Glu Val Asp Pro Glu Phe Ser Ala Arg Leu Thr
500 505 510
Gly Ile Lys Leu Glu Met Glu Pro Ser Leu Ser Phe Tyr Asn Lys Ala
515 520 525
Arg Asn Tyr Ala Thr Lys Lys Pro Tyr Ser Val Glu Lys Phe Lys Leu
530 535 540
Asn Phe Gln Met Pro Thr Leu Ala Ser Gly Trp Asp Val Asn Lys Glu
545 550 555 560
Lys Asn Asn Gly Ala Ile Leu Phe Val Lys Asn Gly Leu Tyr Tyr Leu
565 570 575
Gly Ile Met Pro Lys Gln Lys Gly Arg Tyr Lys Ala Leu Ser Phe Glu
580 585 590
Pro Thr Glu Lys Thr Gln Glu Gly Phe Asp Lys Met Tyr Tyr Asp Tyr
595 600 605
Phe Pro Asp Ala Ala Lys Met Ile Pro Lys Cys Ser Thr Gln Leu Lys
610 615 620
Ala Val Thr Ala His Phe Gln Thr His Thr Thr Pro Ile Leu Leu Ser
625 630 635 640
Asn Asn Phe Ile Glu Pro Leu Glu Ile Thr Lys Glu Ile Tyr Asp Leu
645 650 655
Asn Asn Pro Glu Lys Glu Pro Lys Lys Phe Gln Thr Ala Tyr Ala Lys
660 665 670
Lys Thr Gly Asp Gln Lys Gly Tyr Arg Glu Ala Leu Cys Lys Trp Ile
675 680 685
Asp Phe Thr Arg Asp Phe Leu Ser Lys Tyr Thr Lys Thr Thr Ser Ile
690 695 700
Asp Leu Ser Ser Leu Arg Thr Ser Ser Gln Tyr Lys Asp Leu Gly Glu
705 710 715 720
Tyr Tyr Ala Glu Leu Asn Pro Leu Leu Tyr His Ile Ser Phe Gln Arg
725 730 735
Ile Ala Glu Lys Glu Ile Met Asp Ala Val Glu Thr Gly Lys Leu Tyr
740 745 750
Leu Phe Gln Ile Tyr Asn Lys Asp Phe Ala Lys Gly His His Gly Lys
755 760 765
Pro Asn Leu His Thr Leu Tyr Trp Thr Gly Leu Phe Ser Pro Glu Asn
770 775 780
Leu Ala Lys Thr Ser Ile Lys Leu Asn Gly Gln Ala Glu Leu Phe Tyr
785 790 795 800
Arg Pro Lys Ser Arg Met Lys Arg Met Ala His Arg Leu Gly Glu Lys
805 810 815
Met Leu Asn Lys Lys Leu Lys Asp Gln Lys Thr Pro Ile Pro Asp Thr
820 825 830
Leu Tyr Gln Glu Leu Tyr Asp Tyr Val Asn His Arg Leu Ser His Asp
835 840 845
Leu Ser Asp Glu Ala Arg Ala Leu Leu Pro Asn Val Ile Thr Lys Glu
850 855 860
Val Ser His Glu Ile Ile Lys Asp Arg Arg Phe Thr Ser Asp Lys Phe
865 870 875 880
Phe Phe His Val Pro Ile Thr Leu Asn Tyr Gln Ala Ala Asn Ser Pro
885 890 895
Ser Lys Phe Asn Gln Arg Val Asn Ala Tyr Leu Lys Glu His Pro Glu
900 905 910
Thr Pro Ile Ile Gly Ile Asp Arg Gly Glu Arg Asn Leu Ile Tyr Ile
915 920 925
Thr Val Ile Asp Ser Thr Gly Lys Ile Leu Glu Gln Arg Ser Leu Asn
930 935 940
Thr Ile Gln Gln Phe Asp Tyr Gln Lys Lys Leu Asp Asn Arg Glu Lys
945 950 955 960
Glu Arg Val Ala Ala Arg Gln Ala Trp Ser Val Val Gly Thr Ile Lys
965 970 975
Asp Leu Lys Gln Gly Tyr Leu Ser Gln Val Ile His Glu Ile Val Asp
980 985 990
Leu Met Ile His Tyr Gln Ala Val Val Val Leu Glu Asn Leu Asn Phe
995 1000 1005
Gly Phe Lys Ser Lys Arg Thr Gly Ile Ala Glu Lys Ala Val Tyr Gln
1110 1015 1020
Gln Phe Glu Lys Met Leu Ile Asp Lys Leu Asn Cys Leu Val Leu Lys
1125 1030 1035 1040
Asp Tyr Pro Ala Glu Lys Val Gly Gly Val Leu Asn Pro Tyr Gln Leu
1045 1050 1055
Thr Asp Gln Phe Thr Ser Phe Ala Lys Met Gly Thr Gln Ser Gly Phe
1060 1065 1070
Leu Phe Tyr Val Pro Ala Pro Tyr Thr Ser Lys Ile Asp Pro Leu Thr
1075 1080 1085
Gly Phe Val Asp Pro Phe Val Trp Lys Thr Ile Lys Asn His Glu Ser
1090 1095 1100
Arg Lys His Phe Leu Glu Gly Phe Asp Phe Leu His Tyr Asp Val Lys
1105 1110 1115 1120
Thr Gly Asp Phe Ile Leu His Phe Lys Met Asn Arg Asn Leu Ser Phe
1125 1130 1135
Gln Arg Gly Leu Pro Gly Phe Met Pro Ala Trp Asp Ile Val Phe Glu
1140 1145 1150
Lys Asn Glu Thr Gln Phe Asp Ala Lys Gly Thr Pro Phe Ile Ala Gly
1155 1160 1165
Lys Arg Ile Val Pro Val Ile Glu Asn His Arg Phe Thr Gly Arg Tyr
1170 1175 1180
Arg Asp Leu Tyr Pro Ala Asn Glu Leu Ile Ala Leu Leu Glu Glu Lys
1185 1190 1195 1200
Gly Ile Val Phe Arg Asp Gly Ser Asn Ile Leu Pro Lys Leu Leu Glu
1205 1210 1215
Asn Asp Asp Ser His Ala Ile Asp Thr Met Val Ala Leu Ile Arg Ser
1220 1225 1230
Val Leu Gln Met Arg Asn Ser Asn Ala Ala Thr Gly Glu Asp Tyr Ile
1235 1240 1245
Asn Ser Pro Val Arg Asp Leu Asn Gly Val Cys Phe Asp Ser Arg Phe
1250 1255 1260
Gln Asn Pro Glu Trp Pro Met Asp Ala Asp Ala Asn Gly Ala Tyr His
1265 1270 1275 1280
Ile Ala Leu Lys Gly Gln Leu Leu Leu Asn His Leu Lys Glu Ser Lys
1285 1290 1295
Asp Leu Lys Leu Gln Asn Gly Ile Ser Asn Gln Asp Trp Leu Ala Tyr
1300 1305 1310
Ile Gln Glu Leu Arg Asn Lys Arg Pro Ala Ala Thr Lys Lys Ala Gly
1315 1320 1325
Gln Ala Lys Lys Lys Lys Gly Ser His His His His His His ***
1330 1335 1340
<210> 2
<211> 4029
<212> DNA
<213>Artificial sequence
<220>
<223>
<400> 2
atgtacggtc gtaaaaaacg tcgtcagcgt cgtcgtacac agttcgaggg ctttaccaac 60
ctgtatcagg tgagcaagac actgcggttt gagctgatcc cacagggcaa gaccctgaag 120
cacatccagg agcagggctt catcgaggag gacaaggccc gcaatgatca ctacaaggag 180
ctgaagccca tcatcgatcg gatctacaag acctatgccg accagtgcct gcagctggtg 240
cagctggatt gggagaacct gagcgccgcc atcgactcct atagaaagga gaaaaccgag 300
gagacaagga acgccctgat cgaggagcag gccacatatc gcaatgccat ccacgactac 360
ttcatcggcc ggacagacaa cctgaccgat gccatcaata agagacacgc cgagatctac 420
aagggcctgt tcaaggccga gctgtttaat ggcaaggtgc tgaagcagct gggcaccgtg 480
accacaaccg agcacgagaa cgccctgctg cggagcttcg acaagtttac aacctacttc 540
tccggctttt atgagaacag gaagaacgtg ttcagcgccg aggatatcag cacagccatc 600
ccacaccgca tcgtgcagga caacttcccc aagtttaagg agaattgtca catcttcaca 660
cgcctgatca ccgccgtgcc cagcctgcgg gagcactttg agaacgtgaa gaaggccatc 720
ggcatcttcg tgagcacctc catcgaggag gtgttttcct tcccttttta taaccagctg 780
ctgacacaga cccagatcga cctgtataac cagctgctgg gaggaatctc tcgggaggca 840
ggcaccgaga agatcaaggg cctgaacgag gtgctgaatc tggccatcca gaagaatgat 900
gagacagccc acatcatcgc ctccctgcca cacagattca tccccctgtt taagcagatc 960
ctgtccgata ggaacaccct gtctttcatc ctggaggagt ttaagagcga cgaggaagtg 1020
atccagtcct tctgcaagta caagacactg ctgagaaacg agaacgtgct ggagacagcc 1080
gaggccctgt ttaacgagct gaacagcatc gacctgacac acatcttcat cagccacaag 1140
aagctggaga caatcagcag cgccctgtgc gaccactggg atacactgag gaatgccctg 1200
tatgagcgga gaatctccga gctgacaggc aagatcacca agtctgccaa ggagaaggtg 1260
cagcgcagcc tgaagcacga ggatatcaac ctgcaggaga tcatctctgc cgcaggcaag 1320
gagctgagcg aggccttcaa gcagaaaacc agcgagatcc tgtcccacgc acacgccgcc 1380
ctggatcagc cactgcctac aaccctgaag aagcaggagg agaaggagat cctgaagtct 1440
cagctggaca gcctgctggg cctgtaccac ctgctggact ggtttgccgt ggatgagtcc 1500
aacgaggtgg accccgagtt ctctgcccgg ctgaccggca tcaagctgga gatggagcct 1560
tctctgagct tctacaacaa ggccagaaat tatgccacca agaagcccta ctccgtggag 1620
aagttcaagc tgaactttca gatgcctaca ctggcctctg gctgggacgt gaataaggag 1680
aagaacaatg gcgccatcct gtttgtgaag aacggcctgt actatctggg catcatgcca 1740
aagcagaagg gcaggtataa ggccctgagc ttcgagccca cagagaaaac ccaggagggc 1800
tttgataaga tgtactatga ctacttccct gatgccgcca agatgatccc aaagtgcagc 1860
acccagctga aggccgtgac agcccacttt cagacccaca caacccccat cctgctgtcc 1920
aacaatttca tcgagcctct ggagatcaca aaggagatct acgacctgaa caatcctgag 1980
aaggagccaa agaagtttca gacagcctac gccaagaaaa ccggcgacca gaagggctac 2040
agagaggccc tgtgcaagtg gatcgacttc acaagggatt ttctgtccaa gtataccaag 2100
acaacctcta tcgatctgtc tagcctgcgg acttcctctc agtataagga cctgggcgag 2160
tactatgccg agctgaatcc cctgctgtac cacatcagct tccagagaat cgccgagaag 2220
gagatcatgg atgccgtgga gacaggcaag ctgtacctgt tccagatcta taacaaggac 2280
tttgccaagg gccaccacgg caagcctaat ctgcacacac tgtattggac cggcctgttt 2340
tctccagaga acctggccaa gacaagcatc aagctgaatg gccaggccga gctgttctac 2400
cgccctaagt ccaggatgaa gaggatggca caccggctgg gagagaagat gctgaacaag 2460
aagctgaagg atcagaaaac cccaatcccc gacaccctgt accaggagct gtacgactat 2520
gtgaatcaca gactgtccca cgacctgtct gatgaggcca gggccctgct gcccaacgtg 2580
atcaccaagg aggtgtctca cgagatcatc aaggataggc gctttaccag cgacaagttc 2640
tttttccacg tgcctatcac actgaactat caggccgcca attccccatc taagttcaac 2700
cagagggtga atgcctacct gaaggagcac cccgagacac ctatcatcgg catcgatcgg 2760
ggcgagagaa acctgatcta tatcacagtg atcgactcca ccggcaagat cctggagcag 2820
cggagcctga acaccatcca gcagtttgat taccagaaga agctggacaa cagggagaag 2880
gagagggtgg cagcaaggca ggcctggtct gtggtgggca caatcaagga tctgaagcag 2940
ggctatctga gccaggtcat ccacgagatc gtggacctga tgatccacta ccaggccgtg 3000
gtggtgctgg agaacctgaa tttcggcttt aagagcaaga ggaccggcat cgccgagaag 3060
gccgtgtacc agcagttcga gaagatgctg atcgataagc tgaattgcct ggtgctgaag 3120
gactatccag cagagaaagt gggaggcgtg ctgaacccat accagctgac agaccagttc 3180
acctcctttg ccaagatggg cacccagtct ggcttcctgt tttacgtgcc tgccccatat 3240
acatctaaga tcgatcccct gaccggcttc gtggacccct tcgtgtggaa aaccatcaag 3300
aatcacgaga gccgcaagca cttcctggag ggcttcgact ttctgcacta cgacgtgaaa 3360
accggcgact tcatcctgca ctttaagatg aacagaaatc tgtccttcca gaggggcctg 3420
cccggcttta tgcctgcatg ggatatcgtg ttcgagaaga acgagacaca gtttgacgcc 3480
aagggcaccc ctttcatcgc cggcaagaga atcgtgccag tgatcgagaa tcacagattc 3540
accggcagat accgggacct gtatcctgcc aacgagctga tcgccctgct ggaggagaag 3600
ggcatcgtgt tcagggatgg ctccaacatc ctgccaaagc tgctggagaa tgacgattct 3660
cacgccatcg acaccatggt ggccctgatc cgcagcgtgc tgcagatgcg gaactccaat 3720
gccgccacag gcgaggacta tatcaacagc cccgtgcgcg atctgaatgg cgtgtgcttc 3780
gactcccggt ttcagaaccc agagtggccc atggacgccg atgccaatgg cgcctaccac 3840
atcgccctga agggccagct gctgctgaat cacctgaagg agagcaagga tctgaagctg 3900
cagaacggca tctccaatca ggactggctg gcctacatcc aggagctgcg caacaaaagg 3960
ccggcggcca cgaaaaaggc cggccaggca aaaaagaaaa agggatccca tcatcatcat 4020
catcactaa 4029
<210> 3
<211> 33
<212> DNA
<213>Artificial sequence
<220>
<223>
<400> 3
tacggtcgta aaaaacgtcg tcagcgtcgt cgt 33
<210> 4
<211> 54
<212> DNA
<213>Artificial sequence
<220>
<223>
<400> 4
aaaaggccgg cggccacgaa aaaggccggc caggcaaaaa agaaaaaggg atcc 54
<210> 5
<211> 18
<212> DNA
<213>Artificial sequence
<220>
<223>
<400> 5
catcatcatc atcatcac 18
<210> 6
<211> 82
<212> DNA
<213>Artificial sequence
<220>
<223>
<400> 6
gtttaacttt aagaaggaga tataccatgt acggtcgtaa aaaacgtcgt cagcgtcgtc 60
gtacacagtt cgagggcttt ac 82
<210> 7
<211> 52
<212> DNA
<213>Artificial sequence
<220>
<223>
<400> 7
tcgggctttg ttagcagccg gatcctcgag ttagtgatga tgatgatgat gg 52
<210> 8
<211> 23
<212> DNA
<213>Artificial sequence
<220>
<223>
<400> 8
atgaaattgc tggtagtcga aga 23
<210> 9
<211> 23
<212> DNA
<213>Artificial sequence
<220>
<223>
<400> 9
atgaaattgc tggtagtcga aga 23
<210> 10
<211> 68
<212> DNA
<213>Artificial sequence
<220>
<223>
<400> 10
cgcgggccag cagttcggca aaggatctac aacagtagaa attccctata gtgagtcgta 60
ttaatttc 68
<210> 11
<211> 19
<212> DNA
<213>Artificial sequence
<220>
<223>
<400> 11
actccccaga caggccctg 19
<210> 12
<211> 18
<212> DNA
<213>Artificial sequence
<220>
<223>
<400> 12
caggggctgg ccggtgcg 18
<210> 13
<211> 43
<212> DNA
<213>Artificial sequence
<220>
<223>
<400> 13
aauuucuacu cuuguagaug cacgaagcuc uccgaugugu ugg 43
<210> 14
<211> 43
<212> DNA
<213>Artificial sequence
<220>
<223>
<400> 14
aauuucuacu cuuguagaua ucugcgccuu gggggccagg gag 43
<210> 15
<211> 43
<212> DNA
<213>Artificial sequence
<220>
<223>
<400> 15
aauuucuacu cuuguagaug aacuggccgg cuggccuggg uga 43

Claims (8)

1. a kind of AsCpf1 mutant proteins, it is characterised in that its amino acid sequence such as SEQ ID NO:Shown in 1.
2. a kind of restructuring AsCpf1 gene mutation bodies for encoding AsCpf1 mutant proteins described in claim 1.
3. restructuring AsCpf1 gene mutation bodies according to claim 2, it is characterised in that its nucleotide sequence such as SEQ ID NO:Shown in 2.
4. a kind of recombinant expression carrier of the restructuring AsCpf1 gene mutation bodies containing described in Claims 2 or 33.
5. recombinant expression carrier according to claim 4, it is characterised in that the recombinant expression carrier is with SEQ ID NO:AsCpf1 (S589Q/P711T) shown in 2 enters performing PCR amplification for template design primer, then by the PCR primer nothing of purifying Obtained between the multiple cloning sites NcoI and XhoI of seam cloning process insertion pET15b carriers.
6. the preparation method of AsCpf1 mutant proteins described in a kind of claim 1, it is characterised in that comprise the following steps:
1. the structure of AsCpf1 mutant protein prokaryotic expression carriers described in claim 1 is encoded:With the AsCpf1 of synthesis (S589Q/P711T) genomic DNA is template, and AsCpf1 (S589Q/P711T) coded sequence is expanded with PCR method, will To PCR primer purified, with seamless cloning process insert pET15b carriers multiple cloning sites NcoI and XhoI between, obtain It is all correct through sequence verification reading frame and DNA sequence dna to recombinant expression carrier, i.e., successfully construct the AsCpf1 genes containing restructuring The prokaryotic expression carrier of mutant, is named as pET15b-AsCpf1 (S589Q/P711T);
2. the expression of AsCpf1 mutant proteins:Prokaryotic expression carrier pET15b-AsCpf (S589Q/P711T) is transferred to expression Host Strains Escherichiacoli BL21 (DE3), picking monoclonal is seeded to the LB of the fresh ampicillin containing 50mg/l Culture medium, through 37 DEG C of shaking table cultures to OD600For 0.6, the final concentration of 0.6mM of addition IPTG induction AsCpf1 (S589Q/ P711T expression);
3. the purifying of AsCpf1 mutant proteins:The cell of one liter of zymotic fluid is collected, and is resuspended with the Buffer A of 40ml ice baths, Ice-bath ultrasonic cell lysis, centrifuging and taking supernatant, supernatant passes through Ni-IDA posts;Loading is finished washs Ni- with 50ml Buffer E IDA posts;50ml Buffer G elute Ni-IDA posts, are in charge of collection;The destination protein being eluted to is crossed into CM ion columns;100ml Buffer D wash CM ion columns;10ml Buffer B elute CM ion columns, are in charge of collection;Use specialty analysis software Grab- It 2.5 analyzes TAT-As-cpf1 purity of protein;The AsCpf1 (S589Q/P711T) of elution dialyses albumen to 20mM after merging In Tris, 50mM NaCl pH7.5,20%glycerol;Wherein, Buffer A composition is:20mM Tris-HCl, 50mM NaCl, 1%Triton-100,20%glycerol pH7.5;Buffer E composition is:20mM Tris-HCl pH7.5,2M NaCl, 0.1%TritonX-100,20%glycerol;Buffer G composition is:20mM Tris-HCl pH7.5,50mM NaCl, 0.1%TritonX-100,500mM imidazoles, 20%glycerol;Buffer D composition is:20mM Tris-HCl PH7.5,50mM NaCl, 0.1%TritonX-100,20%glycerol;Buffer B composition is:20mM Tris-HCl PH7.5,50mM NaCl, 0.1%TritonX-100,20%glycerol.
7. the restructuring AsCpf1 gene mutation bodies described in AsCpf1 mutant proteins and Claims 2 or 3 described in claim 1 With application of the recombinant expression carrier described in claim 4 or 5 in terms of gene editing primary T cells PD-1.
8. the method for AsCpf1 mutant protein editor's primary T cells PD-1 genes described in claim 1, it is characterised in that Comprise the following steps:
(1) primary T cells PD-1 Gene Partials sequence amplification
Primary T cells PD-1 genomic DNAs using extraction is templates, and PCR is expanded and reclaimed amplified fragments, used in PCR amplifications just It is to primer:5’-ACTCCCCAGACAGGCCCTG-3’(SEQ ID NO:6), reverse primer is:5’- CAGGGGCTGGCCGGTGCG-3’(SEQ ID NO:7);PCR reaction systems are:Genomic DNA template 100ng, 20 μM of forward directions Primer 1 μ l, 20 μM of μ l of 1 μ l, 2X Ultra Pfu Mix of reverse primer 25, plus ddH2O to the μ l of cumulative volume 50;PCR reaction conditions For:94 DEG C of thermal denaturations 5 minutes, 56 DEG C are annealed 30 seconds, and 72 DEG C extend 1 minute, and 30 circulations are carried out altogether;
(2) AsCpf1 mutant proteins In vitro digestion PD-1
Take PD-1 products, the AsCpf1 mutant proteins of 1 μ l purifying, crRNA, the 2 μ l of 1 μ g synthesis that 1 μ g steps (1) are reclaimed 10*Reaction Buffer, are configured to after 20 μ l In vitro digestion reaction systems, 37 DEG C of water-bath 30min, 2% Ago-Gel electricity Swimming detection cutting;Wherein 10*Reaction B μ ffer composition is:500mM KAc, 200mM Tris- acetic acid, 100mM Mg (Ac)2、1mg/ml BSA pH7.9@25℃;
(3) Western Blotting are detected after AsCpf1 mutant proteins processing primary T cells, the change of PD-1 expressions
Take 1 × 106Individual primary T cells PD-1, adds the AsCpf1 mutant proteins of 20 μ g purifying, and the crRNA of 10 μ g synthesis is mixed Ice bath, electric conversion instrument, which is clicked on to spread after conversion, extracts albumen after 6 orifice plates, 72h, Western Blotting detection PD-1 protein expressions Level changes.
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CN109825532A (en) * 2019-03-04 2019-05-31 中国科学院昆明植物研究所 Application of the CRISPR/Cas12a gene editing system in small liwan moss gene editing
WO2019237383A1 (en) * 2018-06-16 2019-12-19 深圳市博奥康生物科技有限公司 Modified vector used for human tnfsf18 gene editing, preparation method therefor and application thereof
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WO2021031085A1 (en) * 2019-08-19 2021-02-25 南方医科大学 Construction of high-fidelity crispr/ascpf1 mutant and application thereof
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CN113355362A (en) * 2021-06-16 2021-09-07 北京大学 Use of chemically modified CRISPR/Cpf1 complex
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CN114409809A (en) * 2022-02-07 2022-04-29 西安医学院 Recombinant fusion protein TAT-mAIDA-CD47, and preparation method and application thereof

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