CN107058622A - A kind of kit of multiple fluorescence PCR method joint-detection respiratory pathogen - Google Patents

A kind of kit of multiple fluorescence PCR method joint-detection respiratory pathogen Download PDF

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CN107058622A
CN107058622A CN201710201003.5A CN201710201003A CN107058622A CN 107058622 A CN107058622 A CN 107058622A CN 201710201003 A CN201710201003 A CN 201710201003A CN 107058622 A CN107058622 A CN 107058622A
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specific primer
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CN107058622B (en
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童超
邱帆
邱一帆
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Germany Will Acer Biotechnology (xiamen) Co Ltd
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Abstract

The present invention provides a kind of kit of multiple fluorescence PCR method joint-detection respiratory pathogen, includes 6 components:Reaction solution A, reaction solution B, reaction liquid C, enzyme mixation, positive control, negative control are detected comprising 11 kinds of common respiratory pathogens(Influenza A virus is universal, influenza B virus, Respiratory Syncytial Virus(RSV), 1/2/3 type of human parainfluenza viruses, adenovirus, mycoplasma pneumoniae, CPN, legionella pneumophilia, streptococcus pneumonia, haemophilus influenzae, A races streptococcus), expanded by 3 reaction buffers, each reaction buffer includes four fluorescence channels, can investigate clinically 90% pathogenic infection.

Description

A kind of kit of multiple fluorescence PCR method joint-detection respiratory pathogen
Technical field
The invention belongs to quantitative fluorescent PCR field, and in particular to a kind of multiple fluorescence PCR method joint-detection respiratory pathogenses The kit of body.
Background technology
ARI has higher morbidity and mortality, particularly ALRI to cause great disease Burden, the preschool child that the whole world has 20% dies from ALRI(SARI), 90% death is attributed to pneumonia.Pneumonia It is also to cause children to fall ill and main causes of death or acute pneumonia is the main infection form of heating respiratory tract symptom grouping.
Within 1 year old the children Streptococcus incidence of disease be 0.01 ~ 0.68 time/man-year, within 5 years old the children Streptococcus incidence of disease be 0.14 ~ 0.66 time/man-year;Pneumonia death rate children below 1 years old are 485/100,000 ~ 890/100,000, and less than 5 years old children are 184/10 Ten thousand ~ 1 223/100,000.(Data source refers to " China's Mainland pneumonia incidence and mortality ").
At this stage clinically to respiratory pathogen mainly by clinical symptoms, be separately cultured and the conventional hand such as immune detection Duan Jinhang is diagnosed and pathogen investigation.It is separately cultured and takes time and effort, it is necessary to strict laboratory environment, usually require 3 days ability Make a definite diagnosis;And sensitivity of immune detection is low, and there is " window phase ", can just detect corresponding antigen or antibody within 3 ~ 7 days after infection.
The content of the invention
It is main it is an object of the invention to provide a kind of kit of multiple fluorescence PCR method joint-detection respiratory pathogen Multiple real time fluorescence PCR methods are taken to detect respiratory pathogen.
To achieve the above object, the present invention is adopted the following technical scheme that:
The present invention is detected in a kit comprising 11 kinds of common respiratory pathogens(Influenza A virus is universal, second Type influenza virus, Respiratory Syncytial Virus(RSV), 1/2/3 type of human parainfluenza viruses, adenovirus, mycoplasma pneumoniae, CPN, Legionella pneumophilia, streptococcus pneumonia, haemophilus influenzae, A races streptococcus), expanded by 3 reaction buffers, each Reaction buffer includes four fluorescence channels, can investigate clinically 90% pathogenic infection.
The kit includes as follows;Reaction solution A includes Flu-A specific primer and probe, influenza B specificity Primer and probe, adenovirus specific primer and probe, Respiratory Syncytial Virus(RSV) specific primer and probe;
Reaction solution B includes mycoplasma pneumoniae specific primer and probe, CPN specific primer and probe, parainfluenza virus Malicious specific primer and probe, internal control specific primer and probe;
Reaction liquid C is bloodthirsty comprising legionella pneumophilia specific primer and probe, streptococcus pneumonia specific primer and probe, influenza Bacillus specific primer and probe, A races streptococcus specific primer and probe;
Enzyme mixation includes hot start Taq polymerase and M-MLV enzymes;
Positive control includes specific plasmids and TE water;
Negative control includes TE water.
Primer probe sequence:
Reagent component is formulated:
Reaction solution A is formulated:Tris(PH8.8)20mmol/L, KCl 60mmol/L, MgCl2 2.5mmol/L, EDTA2Na 0.1mmol/L, 1%DMSO, dATP 200 μm of ol/L, dGTP 200 μm of ol/L, dCTP 200 μm of ol/L of 200 μm of ol/L, dTTP, Influenza A virus sense primer 417nmol/L, influenza A virus anti-sense primer 417nmol/L, influenza A probe 125nmol/L, influenza B virus sense primer 417nmol/L, influenza B virus anti-sense primer 417nmol/L, B-mode stream Influenza Virus probe 125nmol/L, adenovirus sense primer 417nmol/L, adenovirus anti-sense primer 417nmol/L, adenovirus are visited Pin 125nmol/L, Respiratory Syncytial Virus(RSV) sense primer 417nmol/L, Respiratory Syncytial Virus(RSV) anti-sense primer 417nmol/L, Respiratory Syncytial Virus(RSV) probe 125nmol/L.
Reaction solution B is formulated:Tris(PH8.8)20mmol/L, KCl 60mmol/L, MgCl2 2.5mmol/L, EDTA2Na 0.1mmol/L, 1%DMSO, dATP 200 μm of ol/L, dGTP 200 μm of ol/L, dCTP 200 μm of ol/L of 200 μm of ol/L, dTTP, Mycoplasma pneumoniae sense primer 417nmol/L, mycoplasma pneumoniae anti-sense primer 417nmol/L, mycoplasma pneumoniae probe 125nmol/L, CPN sense primer 417nmol/L, CPN anti-sense primer 417nmol/L, CPN Probe 125nmol/L, parainfluenza virus sense primer 417nmol/L, parainfluenza virus anti-sense primer 417nmol/L, parainfluenza Viral Probe 125nmol/L, internal control sense primer 417nmol/L, internal control anti-sense primer 417nmol/L, internal control probe 125nmol/L。
Reaction liquid C is formulated:Tris(PH8.8)20mmol/L, KCl 60mmol/L, MgCl2 2.5mmol/L, EDTA2Na 0.1mmol/L, 1%DMSO, dATP 200 μm of ol/L, dGTP 200 μm of ol/L, dCTP 200 μm of ol/L of 200 μm of ol/L, dTTP, Streptococcus pneumonia sense primer 417nmol/L, streptococcus pneumonia anti-sense primer 417nmol/L, streptococcus pneumonia probe 125nmol/L, legionella pneumophilia sense primer 417nmol/L, legionella pneumophilia anti-sense primer 417nmol/L, legionella pneumophilia Streptococcus anti-sense primer 417nmol/L, A races of streptococcus sense primer 417nmol/L, A races of probe 125nmol/L, A races streptococcus Probe 125nmol/L, haemophilus influenzae sense primer 417nmol/L, haemophilus influenzae anti-sense primer 417nmol/L, stream Haemophilus influenza probe 125nmol/L.
Enzyme mixation is formulated:Taq enzyme 4U/ μ L, M-MLV enzyme 10U/ μ L.
The advantage of the invention is that:
The advantage of invention:The advantage of the present invention is 1, sensitivity reaches 500copies/mL;2nd, result is directly obtained after having expanded, Without subsequent operation, 3 hours are obtained after sample with regard to result can be obtained;3rd, the without window phase, once infection with regard to that can detect.
The beneficial effect of invention:1st, detection sensitivity is improved, increases recall rate, shortens the course of disease of patient;2nd, the clear and definite cause of disease, Improve medication accuracy rate, it is to avoid drug abuse;3rd, manual operations is reduced, shortens testing process, testing cost is reduced.
Brief description of the drawings
Fig. 1 reaction solution A specific outcome figures.
Fig. 2 reaction solution B specific outcome figures.
Fig. 3 reaction liquid C specific outcome figures.
Fig. 4 reaction solution A linear sensitivity result figures.
Fig. 5 reaction solution B linear sensitivity result figures.
Fig. 6 reaction liquid C linear sensitivity result figures.
Embodiment
Embodiment 1
1st, the preparation of reaction solution
(1)Reaction solution A preparation
10mL volumetric flasks are taken, 0.5mol/L Trizma are separately added into®HCl 64 μ L, 0.5mol/L Trizma® Base 336μ L, 1 mol/L MgCl225 μ L, 1mol/L KCl, 600 μ L, 0.5mol/L EDTA2Na 2 μ L, DMSO 100 μ L, dNTPs 90 μ L, 50 μm of ol/L influenza A virus upstream and downstream primer each 83.4 μ L, 50 μm of μ L of ol/L influenza A probes 25, 50 μm of ol/L influenza B virus upstream and downstream primer each 83.4 μ L, 50 μm of ol/L influenza B virus probes 25 μ L, 50 μm of ol/ In L adenovirus upstream and downstream primer each 83.4 μ L, 50 μm of μ L of ol/L adenovirus probe 25,50 μm of ol/L Respiratory Syncytial Virus(RSV) Anti-sense primer each 83.4 μ L, 50 μm of μ L of ol/L Respiratory Syncytial Virus(RSV) probe 25.Volume is supplied to 10mL with dual distilled water, is turned over Turn to be allowed to fully mixing, liquid is transferred in 10mL beakers, be dispensed into by 1mL/ branch in centrifuge tube, -20 DEG C save backup.
(2)Reaction solution B preparation
10mL volumetric flasks are taken, 0.5mol/L Trizma are separately added into®HCl 64 μ L, 0.5mol/L Trizma® Base 336μ L, 1 mol/L MgCl225 μ L, 1mol/L KCl, 600 μ L, 0.5mol/L EDTA2Na 2 μ L, DMSO 100 μ L, dNTPs 90 μ L, 50 μm of ol/L mycoplasma pneumoniae upstream and downstream primer each 83.4 μ L, 50 μm of ol/L mycoplasma pneumoniaes probes 25 μ L, 50 μ Mol/L CPN upstream and downstream primer each 83.4 μ L, 50 μm of μ L of ol/L CPNs probe 25,50 μm of ol/L sidestream Influenza Virus upstream and downstream primer each 83.4 μ L, 50 μm of μ L of ol/L parainfluenza viruses probe 25,50 μm of ol/L internal control upstream and downstream primer Each 83.4 μ L, 50 μm of μ L of ol/L internal controls probe 25.Volume is supplied with dual distilled water to 10mL, upset is allowed to fully mixing, will Liquid is transferred in 10mL beakers, is dispensed into by 1mL/ branch in centrifuge tube, -20 DEG C save backup.
(3)The preparation of reaction liquid C
10mL volumetric flasks are taken, 0.5mol/L Trizma are separately added into®HCl 64 μ L, 0.5mol/L Trizma® Base 336μ L, 1 mol/L MgCl225 μ L, 1mol/L KCl, 600 μ L, 0.5mol/L EDTA2Na 2 μ L, DMSO 100 μ L, dNTPs 90 μ L, 50 μm of ol/L streptococcus pneumonia upstream and downstream primer each 83.4 μ L, 50 μm of ol/L streptococcus pneumonias probes 25 μ L, 50 μ Mol/L legionella pneumophilia upstream and downstream primer each 83.4 μ L, 50 μm of μ L of ol/L legionella pneumophilias probe 25,50 μm of ol/L A races Above and below streptococcus upstream and downstream primer each 83.4 μ L, 50 μm of μ L of ol/LA races streptococcus probe 25,50 μm of ol/L haemophilus influenzae Swim primer each 83.4 μ L, 50 μm of μ L of ol/L haemophilus influenzaes probe 25.Volume is supplied with dual distilled water to 10mL, upset makes Abundant mixing, liquid is transferred in 10mL beakers, is dispensed into by 1mL/ branch in centrifuge tube, -20 DEG C save backup.
(4)The preparation of enzyme mixation
10mL volumetric flasks are taken, 10000U/mL Taq enzyme 4mL, 25000U/mL M-MLV enzymes 4mL is separately added into.Use dual distillation Water supplies volume to 10mL, and upset is allowed to fully mixing, liquid is transferred in 10mL beakers, and centrifugation is dispensed into by 100 μ L/ branch Guan Zhong, -20 DEG C save backup.
(5)The preparation of negative control
100mL volumetric flasks are taken, physiological saline is added and is settled to 100mL, liquid is transferred in 10mL beakers, by 500 μ L/ branch point It is attached in centrifuge tube, -20 DEG C save backup.
(6)The preparation of positive control(Concentration is 5.0 × 103copies/mL)
100mL volumetric flasks are taken, 5.0 × 10 are separately added into7Copies/mL influenza A virus, influenza B virus, adenovirus, Respiratory Syncytial Virus(RSV), mycoplasma pneumoniae, CPN, parainfluenza virus, streptococcus pneumonia, legionella pneumophilia, A races hammer Bacterium and haemophilus influenzae plasmid(Each plasmid entrusts general biosystem(Anhui)Co., Ltd synthesizes)Each 10 μ L.Use physiology salt Water is settled to 100mL, and liquid is transferred in 100mL beakers, is dispensed into by 500 μ L/ branch in centrifuge tube, -20 DEG C save backup.
2nd, nucleic acid extraction
Nucleic acid extraction is carried out using the nucleic acid extraction kit put on record, it is pure with micro ultraviolet specrophotometer survey nucleic acid after extraction Degree, its OD260/OD280 should be between 1.6 ~ 2.0.
3rd, machine on sample-adding
(1)Reactant mixture is prepared
Take out reaction solution A, reaction solution B, reaction liquid C, enzyme mixation room temperature to place, it is fully dissolved, prepare reactant mixture (Per test configurations system:The μ L enzyme mixations of 29.5 μ L reaction solutions+0.5), reagent dosage is calculated as required, is sufficiently mixed After uniform, 3000-5000g is centrifuged 5 seconds.
(2)Sample-adding
0.2mL amplifications pipe or eight unions are taken, the reactant mixture that 30 μ L are prepared is added, the sample extracted is then taken into 2 μ L adds amplification pipe or eight unions, covers lid, is inserted after somewhat centrifuging in fluorescent PCR amplification instrument.
(3)Upper machine testing
1)Cycling condition is set
38 DEG C 5 minutes, 95 DEG C 10 minutes;Into following circulation:95 DEG C 15 seconds, 58 DEG C 40 seconds(Detect signal), 40 circulations; 25 DEG C 30 seconds.
2)Instrument sense channel is selected
Fluorescein is set as FAM, ROX, HEX and CY5.
4th, result judges
(1)Negative control should be without Ct values or for 0;Positive control Ct values answer≤36;CY5 channel Cs t values answer≤36 in reaction solution B;
(2)Sample test result answers following table to judge
Embodiment 2
1st, reagent specificity verification
(1)Experiment sample
Take 10 parts of specific samples to verify the specificity of reagent, wherein 4 parts be physiological saline, 1 part be the inclined tuberculosis of people Malicious sample, 1 part be rubella virus sample, 1 part be measles virus sample, 1 part be Friedlander's bacillus sample, 1 part be large intestine Bacillus sample, 1 part be staphylococcus aureus sample.
(2)Experimentation
With reaction solution A, reaction solution B, respectively reaction liquid C, more than detection 10 parts of specific samples, testing result, checking examination are analyzed The specificity of agent.
(3)Experimental result
Three kinds of reaction solutions detect that 10 parts of specific samples are all negative, show that reagent specificity is good, no cross reaction situation.Specifically As a result it see the table below:
Reaction solution A specific detection results
Reaction solution B specific detection results
Reaction liquid C specific detection result
2nd, reagent accurate is verified
(1)Experiment sample
Take 1 part of accuracy sample(Concentration is 5.0 × 103copies/mL)Accuracy to reagent verifies that sample is prepared Method is separately added into 5.0 × 10 to take 100mL volumetric flasks7Copies/mL influenza A virus, influenza B virus, adenopathy Poison, Respiratory Syncytial Virus(RSV), mycoplasma pneumoniae, CPN, parainfluenza virus, internal control, streptococcus pneumonia, Shi Fei legions Bacterium, A races streptococcus and each 10 μ L of haemophilus influenzae plasmid, 100mL is settled to physiological saline.
(2)Experimentation
With reaction solution A, reaction solution B, respectively reaction liquid C, repeatedly detection above accuracy sample 10 times, testing result is analyzed, is tested Demonstrate,prove the accuracy of reagent.
(3)Experimental result
Three kinds of reaction solutions detect accuracy sample variation within batch coefficient(CV values)Equal < 5%, shows that reagent is reproducible.Specific knot Fruit see the table below:
Reaction solution A accuracy testing results
Reaction solution B accuracy testing results
Reaction liquid C accuracy testing result
3rd, reagent minimum detection limit is verified
(1)Experiment sample
Take 1 part of minimum detection limit sample(Concentration is 5.0 × 102copies/mL)Minimum detection limit to reagent verifies, Sample compound method is separately added into 5.0 × 10 to take 100mL volumetric flasks3Copies/mL accuracy sample 10mL, uses physiology Salt solution is settled to 100mL.
(2)Experimentation
With reaction solution A, reaction solution B, reaction liquid C, respectively repeatedly detection above minimum detection limit sample 10 times, analysis detection knot Really, the minimum detection limit of reagent is verified.
(3)Experimental result
Three kinds of reaction solution detection minimum detection limit samples are the positive, and the lowest detection of reagent is limited to 5.0 × 102copies/mL。 Concrete outcome see the table below:
4th, reagent linear sensitivity is verified
(1)Experiment sample
Take 8 parts of line style sensitivity samples(Concentration is respectively 5.0 × 108copies/mL、5.0×107copies/mL、5.0× 106copies/mL、5.0×105copies/mL、5.0×104copies/mL、5.0×103copies/mL、5.0× 102copies/mL、5.0×101copies/mL、)The linear of reagent is verified.
(2)Experimentation
With reaction solution A, reaction solution B, respectively reaction liquid C, detection above linear sample, testing result is analyzed, the line of reagent is verified Intelligent sensitivity.
(3)Experimental result
Three kinds of reaction solutions detection line style sensitivity samples are the positive, reagent it is linear good.Concrete outcome See Figure 4-6.
Embodiment 3:Detect the result of 120 clinical samples
1st, according to the compound method shown in embodiment 1, reagent preparation box related component is saved backup in -20 DEG C.
2nd, healthcare hospital for women & children of Wuhan City have collected 120 have clinical respiratory infection symptoms patient's throat swab sample and Sputum sample, must Acer biotechnology using moral(Xiamen)The nucleic acid extracting reagent of Co., Ltd's production(Virus type)Nucleic acid is carried out to carry Take, with the purity of UV spectrophotometer measuring DNA sample, 120 sample OD260/OD280 are all between 1.6 ~ 2.0.
3rd, according to the step shown in embodiment 1, DNA sample-addings is carried out and upper quantitative real time PCR Instrument is detected that this makes Instrument is ABI7500.
4th, according to criterion shown in embodiment 1, interpretation is carried out to result and is counted, as a result such as following table:
Presently preferred embodiments of the present invention is the foregoing is only, all equivalent changes done according to scope of the present invention patent are with repairing Decorations, should all belong to the covering scope of the present invention.
SEQUENCE LISTING
<110>Moral must Acer biotechnology (Xiamen) Co., Ltd
<120>A kind of kit of multiple fluorescence PCR method joint-detection respiratory pathogen
<130> 36
<160> 36
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<213>Artificial sequence
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ccgacttgca tttgctctct 20
<210> 32
<211> 20
<212> DNA
<213>Artificial sequence
<400> 32
gaacggtctt tgcgtttctc 20
<210> 33
<211> 21
<212> DNA
<213>Artificial sequence
<400> 33
aggggattcg cgctttgcag a 21
<210> 34
<211> 20
<212> DNA
<213>Artificial sequence
<400> 34
acagtcagcc gcatcttctt 20
<210> 35
<211> 20
<212> DNA
<213>Artificial sequence
<400> 35
acgaccaaat ccgttgactc 20
<210> 36
<211> 20
<212> DNA
<213>Artificial sequence
<400> 36
cagccgagcc acatcgctca 20

Claims (5)

1. a kind of kit of multiple fluorescence PCR method joint-detection respiratory pathogen, it is characterised in that;The kit includes It is as follows:Reaction solution A is special comprising Flu-A specific primer and probe, influenza B specific primer and probe, adenovirus Property primer and probe, Respiratory Syncytial Virus(RSV) specific primer and probe;
Reaction solution B includes mycoplasma pneumoniae specific primer and probe, CPN specific primer and probe, parainfluenza virus Malicious specific primer and probe, internal control specific primer and probe;
Reaction liquid C is bloodthirsty comprising legionella pneumophilia specific primer and probe, streptococcus pneumonia specific primer and probe, influenza Bacillus specific primer and probe, A races streptococcus specific primer and probe.
2. a kind of kit of multiple fluorescence PCR method joint-detection respiratory pathogen according to claim 1, its feature It is:The kit also includes as follows:Enzyme mixation includes hot start Taq polymerase and M-MLV enzymes;
Positive control includes specific plasmids and TE water;
Negative control includes TE water.
3. a kind of kit of multiple fluorescence PCR method joint-detection respiratory pathogen according to claim 1, its feature It is;Flu-A specific primer is in described reaction solution A:F:tgatcctctcgtcattgcag、R: Ctcaggcactccttccgtag, probe is FAM-tgggatcttgcacctgatattgtgga-BHQ1;
Influenza B specific primer is:F:atgcaagggtttccatgttc、R:Accctccgtctccacctact, probe is HEX-tccgatgaccagatctggggg-BHQ1;
Adenovirus specific primer is:F:agtcttgcatgagccgttct、R:Ggactcacacgtatgcatgg, probe is ROX-cgggcacttcttcctcacccg-BHQ2;
Respiratory Syncytial Virus(RSV) specific primer is:F:gtgcagggcaagtgatgtta、R:Tgatgcttttgggttgttca, Probe is CY5-tgctcagaaattgggtggagaagcaBHQ2.
4. a kind of kit of multiple fluorescence PCR method joint-detection respiratory pathogen according to claim 1, its feature It is;Mycoplasma pneumoniae specific primer is in described reaction solution B:F:cagctcgtgtcgtgagatgt、R: Ttgacgtcatcccttccttc, probe is FAM-agtcccgcaacgagcgcaac-BHQ1;
CPN specific primer is:F:agccataacgccgtgaatac、R:Atcccagtcatcagcctcac, probe For HEX-cccgggccttgtacacaccg-BHQ1;
Parainfluenza virus specific primer is:F:caggtgtcacggctgttcta、R:Ttccgtctgggttttactgg, probe For ROX-ccaatgcagcagaggcaaaatcc-BHQ2;
Internal control specific primer is:F:acagtcagccgcatcttctt、R:Acgaccaaatccgttgactc, probe is CY5- cagccgagccacatcgctca-BHQ2。
5. a kind of kit of multiple fluorescence PCR method joint-detection respiratory pathogen according to claim 1, its feature It is;Legionella pneumophilia specific primer is in described reaction liquid C:F:ggctttaaccgaacagcaaa、R: Ttgcaaaccacttggcaata, probe is HEX-caaaaacaagccaggcgttgttg-BHQ1;
Streptococcus pneumonia specific primer is:F:ttatcactggcggaaagacc、R:Tcagttcaaccgctgcatag, probe For FAM-acgttgggggcggttggaat-BHQ1;
Haemophilus influenzae specific primer is:F:ccgacttgcatttgctctct、R:Gaacggtctttgcgtttctc, is visited Pin is CY5-aggggattcgcgctttgcaga-BHQ2;
A races streptococcus specific primer is:F:gtgttttcggcacaaaaggt、R:Cgcactaaacccttcagctc, probe For ROX-cagctatgcggcgtgcctca-BHQ2.
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