CN104894150A - A saussurea involucrata cell phenylalanine ammonia lyase gene SiPAL, a coding product thereof and applications of the gene - Google Patents

A saussurea involucrata cell phenylalanine ammonia lyase gene SiPAL, a coding product thereof and applications of the gene Download PDF

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CN104894150A
CN104894150A CN201510256188.0A CN201510256188A CN104894150A CN 104894150 A CN104894150 A CN 104894150A CN 201510256188 A CN201510256188 A CN 201510256188A CN 104894150 A CN104894150 A CN 104894150A
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sipal
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saussurea involucrata
phenylalanine ammonia
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黄璐琦
袁媛
陈晓霞
杨健
查良平
刘汉石
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Dalian Practical Biotechnology Co Ltd (china)
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Abstract

A saussurea involucrata cell phenylalanine ammonia lyase gene SiPAL, a coding product thereof and applications of the gene are provided. The SiPAL gene is obtained by sequencing a transcriptome of saussurea involucrata cells and by analyzing and screening the sequencing results. The cDNA length of the gene is 2405 bp. The open reading frame is between 120 bp and 2264 bp. The nucleotide sequence of the gene is shown as SEQ ID NO:1. The phenylalanine ammonia lyase can be prepared by utilization of an SiPAL recombinant expression vector obtained by connecting the gene and a plant expression vector, and can be used for preparation of cinnamic acid by adopting L-phenylalanine as a substrate. By utilization of the gene and the coding product, the content of syringin that is a natural medicinal component can be increased by a genetic engineering technique especially in the field of cell and/or tissue culture of saussurea involucrate and plants of adjacent categories.

Description

Herba Saussureae Involueratae cell Phenylalanine Ammonia-Lyase Gene SiPAL and coded product thereof and application
Technical field
The invention belongs to gene engineering technology field, be specifically related to saussurea involucrata cell phenylalanine ammonia lyase (SiPAL) gene and coded product thereof and application.
Background technology
Herba Saussureae Involueratae (Saussurea involucrata) is composite family Genus Saussurea plant, main product is in Xinjiang Tianshan, Kun Lun Mountain, growth is more than snow line, among the people with all herbal medicine, there is the effects such as promoting blood circulation to restore menstrual flow, dispelling cold and removing dampness, by force muscle are supporing yang, be used for the treatment of the illness such as rheumatic arthritis, lung cold cough, amenorrhoea, retention of placenta, impotence [1].Because Herba Saussureae Involueratae growing environment is special, artificial culture is difficult, one of saussurea involucrata cell substitute becoming Herba Saussureae Involueratae.Main containing lignin compositions such as Syringins in saussurea involucrata cell [2-4], first key enzyme of its biosynthetic pathway is exactly phenylalanine ammonia lyase.Phenylalanine ammonia lyase (Phenylalanin ammonia-lyase, PAL) be the enzyme of catalysis phenylalanine metabolic pathways approach the first step reaction, be key enzyme and the rate-limiting enzyme of this approach, it plays an important role in the secondary metabolite synthesis such as xylogen, tonka bean camphor, flavonoid, flavonol, isoflavones and anthocyanidin.Its function is that catalysis L-Phe generates trans-cinnamic acid, is further converted to tonka bean camphor, chlorogenic acid, also can forms CoA ester, then be further converted to the xylogen such as Syringin.The clone of Herba Saussureae Involueratae cell phenylalanine ammonia lyase (SiPAL) gene, improving saussurea involucrata cytoactive composition Syringin content for utilizing genetically engineered provides important foundation.
Before the present invention comes forth, not yet have any open or reported Herba Saussureae Involueratae Phenylalanine Ammonia-Lyase Gene mentioned in the present invention and aminoacid sequence thereof.
Reference:
[1] Chinese Pharmacopoeia Commission. Pharmacopoeia of the People's Republic of China version () in 2010. Beijing: Chemical Industry Press, 2010:50-51.
[2] Li Junshan, Cai Shaoqing. the chemistry of saussurea involucrata flos materia medica and pharmacological research progress [J]. Chinese Pharmaceutical Journal, 1998,33 (8): 449-452
[3] Li Yan, Guo Shunxing, Wang Chunlan, etc. Herba Saussureae Involueratae cell culture chemical constitution study [J]. Chinese Pharmaceutical Journal, 2008,42 (23): 1768-1769.
[4] Chen Dao. the chemical composition of Herba Saussureae Involueratae culture and Syringin determination study [D]. Shenyang: Shenyang Pharmaceutical University, 2009.
Summary of the invention
The present invention is for solving the above-mentioned problems in the prior art, there is provided by Herba Saussureae Involueratae phenylalanine ammonia lyase (SiPAL) gene of cloning in Herba Saussureae Involueratae (Saussurea involucrata) cell, the length of this gene cDNA is 2405bp, opening code-reading frame is between 120-2264bp, and the nucleotide sequence of this gene is as shown in SEQ ID NO:1.
Another aspect of the present invention is the protein of SiPAL coded by said gene openly mentioned above, and its aminoacid sequence is as shown in SEQ ID NO:2.
Another aspect of the present invention is the amplimer of openly SiPAL gene mentioned above, and its sequence is as shown in SEQ ID NO:3 ~ 4.
Another aspect of the present invention is openly containing SiPAL gene recombinant vectors mentioned above.SiPAL gene provided by the present invention, is connected to and the expression vector of foreign gene in expression of plants can be guided to prepare SiPAL gene recombinant vectors.In preferred situation, described expression vector is plasmid pET-31b (+).SiPAL gene of the present invention, when being building up in expression vector, adds any one strong promoter or inducible promoter before its transcription initiation Nucleotide, simultaneously must be identical with the reading frame of encoding sequence, ensure the translation of whole sequence.For the ease of identifying transgenic plant cells or plant and screening, can process carrier when carrier construction, such as add selectable markers, usual spendable mark is to the gene of antibiotics resistance enzyme and Biosafety mark, also can be that GUS, GFP etc. can produce the enzyme of colour-change or the gene etc. of luminophor.
Another aspect of the present invention is the host cell of openly SiPAL gene mentioned above.Preferably, this host cell contains the above-described recombinant expression vector containing SiPAL gene.In the inventive solutions, described host cell preferably adopts the cells such as E.coli BL21 (DE3), E.coli BL21.
Another aspect of the present invention is the openly application of SiPAL gene mentioned above in saussurea involucrata cell or tissue is cultivated, and specifically can be applied to the preparation of biological process synthesis lignin composition.Further, described lignin composition is the important effective constituent Syringin of Herba Saussureae Involueratae.
Herba Saussureae Involueratae cell of the present invention is that the method recorded in the patent of invention of 200510115902.0 obtains according to application number, choose saussurea involucrata in vitro tissue, the callus formed through dedifferentiation, as subculture kind, is given and is carried out the red-purple agglomerate of extensive succeeding transfer culture acquisition with certain condition.
Beneficial effect of the present invention: the present invention's success has cloned a kind of Herba Saussureae Involueratae phenylalanine ammonia lyase (SiPAL) gene from saussurea involucrata cell, and it is that substrate prepares styracin that this enzyme can be applied to L-Phe.Utilize the present invention can be improved the content of natural effective component Syringin by genetic engineering technique, the content of saussurea involucrata cell effective component Syringin can also be evaluated by gene.
Accompanying drawing explanation
Fig. 1 is the correlation analysis result of ligustrin content and Phenylalanine Ammonia-Lyase Gene expression level;
Fig. 2 is SiPAL Structure and function domain forecast analysis (deriving from ncbi database);
Fig. 3 is SiPAL systematic evolution tree;
Fig. 4 is the collection of illustrative plates of the recombinant expression vector pET-SiPAL expressing SiPAL gene of the present invention;
Fig. 5 is that the present invention contains the pET plasmid of SiPAL clone through digestion with restriction enzyme electroresis appraisal result, and wherein swimming lane 1 is 1kb DNA ladder, and swimming lane 2 cuts pET-SiPAL product for XhoI enzyme, and swimming lane 3 cuts pET-SiPAL product for NdeI and XhoI enzyme.
Fig. 6 is the SDS-polyacrylamide gel electrophoresis result of SiPAL protein.Wherein swimming lane 1 is Protein Ruler Marker l, and swimming lane 2 is E.coli BL21 (DE3) culture containing pET-31b (+) empty carrier; Swimming lane 3 is E.coli BL21 (DE3) culture containing pET-SiPAL.
Embodiment
Following embodiment is convenient to better understand the present invention, but does not limit the present invention.In addition, in following embodiment, in the test method that the present invention uses, if no special instructions, be the common practise of those skilled in the art, various buffered soln, detection reagent etc., if no special instructions, all can be obtained by commercial sources or be prepared by normal experiment method.
Reagent such as T4-DNA ligase enzyme, Marker, E. coli competent DH5 α and E.coli BL21 (DE3), pET-31b (+) carrier and DNA gel is used to reclaim test kit purchased from Beijing Quanshijin Biotechnology Co., Ltd in test, ExTaq enzyme and RNA Reverse Transcription box are purchased from company of TIANGEN Biotech (Beijing) Co., Ltd., the restriction enzymes such as NdeI, XhoI are purchased from Niu Yinglun (NEB) biotechnology Beijing company limited, and other common agents are purchased from precious biological (Dalian) Engineering Co., Ltd (TaKaRa) company.Primer synthesis and order-checking are completed by Beijing Bioisystech Co., Ltd of farsighted Boxing section.
Below by example, the present invention is described in further detail.
Embodiment 1 saussurea involucrata cell transcription group checks order
Utilize Trizol to extract the total serum IgE of Herba Saussureae Involueratae cell respectively, by the order-checking of Illumina Hiseq2000 platform, amount to output 14372403000nt data.Assembling result total Unigene148718, overall length 138529450nt, mean length 931nt, N50 reach 1515nt.Unigene functional annotation, annotation is 77514 to the Unigene in NR, NT, Swiss-Prot, KEGG, COG, GO storehouse respectively, and 63458,49750,45573,28939,55950, the Unigene on all annotations is 83169.Predictive coding albumen frame (CDS), comparison has 75735 to the CDS of protein pool, and the CDS doped has 5305, totally 81040.Annotated by GO, the software analysis such as Blast comparative analysis and MEGA6.0 phylogenetic tree construction, therefrom obtain Herba Saussureae Involueratae cell Phenylalanine Ammonia-Lyase Gene man family sequence.
Described Herba Saussureae Involueratae cell is that the method recorded in the patent of invention of 200510115902.0 obtains according to application number, choose saussurea involucrata in vitro tissue, the callus formed through dedifferentiation, as subculture kind, is given and is carried out the red-purple agglomerate of extensive succeeding transfer culture acquisition with certain condition.
Embodiment 2 saussurea involucrata cell Phenylalanine Ammonia-Lyase Gene screens
UPLC-qTOF-MS (Ultra Performance Liquid Chromatography-quadrupole flight time mass spectrum) is utilized to measure liposoluble ingredient in Herba Saussureae Involueratae cell, and correlation analysis is carried out to Syringin content and Phenylalanine Ammonia-Lyase Gene family member expression level in the different cell mass of above-mentioned Herba Saussureae Involueratae clone, screening and activeconstituents accumulate closely-related Herba Saussureae Involueratae cell Phenylalanine Ammonia-Lyase Gene, called after SiPAL (as shown in Figure 1), its nucleotide sequence is as SEQ ID No:1, the aminoacid sequence of the protein of this genes encoding is as shown in SEQ ID NO:2.
Embodiment 3 saussurea involucrata cell Phenylalanine Ammonia-Lyase Gene
The clone of SiPAL utilizes forward primer P1:5 ' ACCACAACTCTCAGCTACCCTCCTC 3 ', reverse primer P2:5 ' TGGCAGGGGAGGGATAGAATTC 3 ', with Herba Saussureae Involueratae cell phenylalanine ammonia lyase SiPAL full length sequence for template carries out pcr amplification.Amplification system is as follows: 10 × Buffer 2.5 μ L, the each 1 μ L of dNTP (2.5mmolL-1) 1 μ L, primer P1 and P2, Taq archaeal dna polymerase (5UL-1) 0.2 μ L, template 1 μ L (about 20ng), all the other are supplied with aseptic double-distilled water.Reaction conditions: 94 DEG C of denaturation 5min, 94 DEG C of 30s, 56 DEG C of annealing 30s, 72 DEG C extend 2min30s, 35 rear 72 DEG C of extension 10min of circulation, 4 DEG C of preservations.So far Herba Saussureae Involueratae Phenylalanine Ammonia-Lyase Gene SiPAL is obtained.
The bioinformatic analysis of embodiment 4 SiPAL gene
The length of the Herba Saussureae Involueratae Phenylalanine Ammonia-Lyase Gene SiPAL full-length cDNA that the present invention relates to is 2405bp, and detailed sequence is as the SEQ ID NO.1 in sequence table, and wherein opening code-reading frame is positioned at 120-2264bp.Blast program in SiPAL gene order ncbi database is carried out nucleotide homology retrieval in Non-redundant GenBank+EMBL+DDBJ+PDB and Non-redundant GenBank CDS translation+PDB+Swissprot+Superdate+PIR database.This gene has higher homology with the PAL in other species on amino acid levels, has typical PAL-HAL structural domain simultaneously.As Fig. 2 and Fig. 3.Wherein Fig. 2 is SiPAL Structure and function domain forecast analysis (deriving from ncbi database); Fig. 3 is SiPAL systematic evolution tree (adjacent method).
The structure of embodiment 5 SiPAL gene plant expression vector
With SiPAL cDNA for template, design specific upstream primer P3 and downstream primer P4, carry out pcr amplification reaction, in primer, dashed part is restriction enzyme site.
Primer Sequence names Base sequence (5 ' → 3 ')
P3 SEQ ID NO.3 CATATGCCCCATTCAATCATCTC
P4 SEQ ID NO.4 CTCGAGGCAACAAAATACTAAAACGT
PCR reaction system (25 μ L) is: containing 10 × PCR damping fluid 2.5 μ L, dNTP (2.5mmolL-1) 1 μ L, each 0.2 μ L, Taq archaeal dna polymerase (5UL-1) the 0.2 μ L and template 1 μ L (about 20ng) of diagnostic primers (10 μm of olL-1) in reaction system, supply reaction volume with aseptic double-distilled water.
PCR reaction conditions: 95 DEG C of denaturation 5min, 95 DEG C of 30s, 56 DEG C of annealing 30s, 72 DEG C extend 2min30s, 35 rear 72 DEG C of extension 10min of circulation, 4 DEG C of preservations.
Get 5 μ l amplified productions to add 3 μ l bromine Finland and carry out agarose gel electrophoresis, take a picture after half an hour, observe glue figure, amplified fragments is 2144bp.Cut amplified production 2 hours with NdeI and XhoI enzyme at 37 DEG C, utilize DNA gel to reclaim test kit (Takara company, China) purifying digestion products.Utilize NdeI and XhoI enzyme at 37 DEG C to cut pET-31b (+) carrier 2 hours simultaneously, add 5 μ l bromine Finland and carry out agarose gel electrophoresis, observe glue figure, and utilize DNA gel to reclaim test kit recovery 5300bp fragment.
The two spends the night 8 DEG C of connections through T4 ligase enzyme.Electroporated bacillus coli DH 5 alpha competent cell, the LB flat board containing penbritin screens recon.Containing the pET plasmid of SiPAL clone through PCR and digestion with restriction enzyme electroresis appraisal (as Fig. 5) and DNA sequence analysis, preserve there is correct target sequence recombinant plasmid pET-SiPAL for expressing conversion.In Fig. 4, swimming lane 1 is 1kb DNA ladder, and swimming lane 2 cuts pET-SiPAL product for XhoI enzyme, and swimming lane 3 cuts pET-SiPAL product for NdeI and XhoI enzyme, this plant expression vector called after pET-SiPAL (Fig. 4).
The abduction delivering of embodiment 6 engineering bacteria
With target plasmid pET-SiPAL electricity Transformed E .coli BL21 (DE3) competent cell, cultivate the positive strain (E.coli BL21 (DE3)-SiPAL) of screening containing pET-SiPAL plasmid.This bacterial strain contains can the restructuring t7 rna polymerase gene of abduction delivering, thus starts the high expression of the SiPAL recombination of the upper T7 promotor control of pET-SiPAL.Positive colony E.coliBL21 (DE3)-SiPAL is inoculated in the LB substratum containing 50 μ g/ml penbritins, 37 DEG C of shaking culture 12-16h, OD600=0.9-1.0, be inoculated in fresh in the substratum of antibiotics ampicillin with 1: 100 ratio, 37 DEG C of shaking culture 3 ~ 5h increase, get 1ml bacterium liquid as contrast before induction, then the isopropylthio-β-D-galactoside (IPTG) that final concentration is 1mmol/L is added, engineering bacterium expression is induced in 37 DEG C of shaking culture, 1ml is sampled after induction 3h, with E.coli BL21 (DE3) culture containing pET-31b (+) empty carrier for negative control.SDS-polyacrylamide gel electrophoresis result shows, is about 76.3kD place at molecular weight, occurs an obvious specific protein band of expression, consistent with theoretical value (as Fig. 6).Wherein swimming lane 1 is Protein Ruler Marker l, and swimming lane 2 is E.coli BL21 (DE3) culture containing pET-31b (+) empty carrier; Swimming lane 3 is the culture containing pET-SiPAL.
The preparation of embodiment 7 crude enzyme liquid
1. the preparation of thick zyme extract: obtain positive strain (E.coli BL21 (DE3)-SiPAL) containing pET-SiPAL plasmid in the LB substratum containing 50 μ g/ml penbritins in embodiment 6,37 DEG C of shaking culture, after cell density reaches OD600=1.8-2.0,12000r/min, 4 DEG C, centrifugal 1min.Collect bacterial sediment, be resuspended in PBS (pH7.4) damping fluid, wash 2 times.Add the N,O-Diacetylmuramidase of 10mg/ml, room temperature places 15min, then adds 100 μ l cell pyrolysis liquids (containing 1mmol/LDTT, 0.1mmol/L EDTA, PBS, the pH7.4 of 10% glycerine), thermal agitation 1min, ice bath 1min, repeats 6 times.12000r/min, 4 DEG C, centrifugal 20min, Aspirate supernatant, as thick zyme extract, is put for subsequent use on ice.
2.PAL determination of activity: determination of activity is undertaken by following condition: reaction system is 0.1mol/L Tris-HCl (pH8.8) damping fluid 600 μ l, 0.01mol/L L-Phe (L-Phe) 150 μ l, thick zyme extract 30 μ l; Blank is with 30 μ l ddH 2o substitutes crude enzyme liquid.37 DEG C of water bath heat preservation reaction 1h.With the OD before and after ultraviolet spectrophotometer assaying reaction during 0h and 1h 290, with the actual vigor of the two mathematic interpolation cell crude enzyme liquid PAL.Enzyme activity unit adopts international unit of enzyme (IU), both generates 1 μm of ol styracin for 1IU with per minute.The unit of activity of formula specific activity of enzyme=enzyme/crude enzyme liquid protein content is utilized to calculate the Rate activity of restructuring PAL enzyme, find that SiPAL transgenic engineering bacterial strain (E.coli BL21 (D32)-SiPAL) is 237.3 μm of ol/ming pro, namely 237.3U/g, SiPAL protein (phenylalanine ammonia lyase) expression amount reaches about the 9wt% of total protein content.

Claims (9)

1. the SiPAL gene of Herba Saussureae Involueratae (Saussurea involucrata) cell, it is characterized in that, the length of this gene cDNA is 2405bp, and opening code-reading frame is between 120-2264bp, and the nucleotide sequence of this gene is as shown in SEQ ID NO:1.
2. the protein of SiPAL genes encoding according to claim 1, its aminoacid sequence is as shown in SEQ ID NO:2.
3. the primer of amplification SiPAL gene according to claim 1, its sequence is as shown in SEQ ID NO:3 ~ 4.
4. the recombinant expression vector containing gene according to claim 1.
5. the host cell containing gene according to claim 1.
6. host cell according to claim 5, is characterized in that, this host cell contains recombinant expression vector according to claim 4.
7. the application of SiPAL gene according to claim 1 in saussurea involucrata and close kind vegetable cell and/or tissue culture thereof.
8. SiPAL gene according to claim 1 is utilizing the application in Biological preparation lignin composition.
9. application according to claim 8, is characterized in that, described lignin composition is Syringin.
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