CN104272311B - Dna序列的数据分析 - Google Patents

Dna序列的数据分析 Download PDF

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Publication number
CN104272311B
CN104272311B CN201380008411.9A CN201380008411A CN104272311B CN 104272311 B CN104272311 B CN 104272311B CN 201380008411 A CN201380008411 A CN 201380008411A CN 104272311 B CN104272311 B CN 104272311B
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China
Prior art keywords
sequence
reference data
data
genome
sequences
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Expired - Fee Related
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CN201380008411.9A
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Chinese (zh)
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CN104272311A (zh
Inventor
L·萨斯特里-登特
S·斯里拉姆
N·埃兰戈
Z·曹
K·N·穆瑟兰曼
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Corteva Agriscience LLC
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Dow AgroSciences LLC
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    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/10—Ontologies; Annotations

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  • Life Sciences & Earth Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Theoretical Computer Science (AREA)
  • Evolutionary Biology (AREA)
  • Biophysics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biotechnology (AREA)
  • Medical Informatics (AREA)
  • General Health & Medical Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Analytical Chemistry (AREA)
  • Chemical & Material Sciences (AREA)
  • Bioethics (AREA)
  • Databases & Information Systems (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Management, Administration, Business Operations System, And Electronic Commerce (AREA)
CN201380008411.9A 2012-02-08 2013-02-07 Dna序列的数据分析 Expired - Fee Related CN104272311B (zh)

Applications Claiming Priority (5)

Application Number Priority Date Filing Date Title
US201261596540P 2012-02-08 2012-02-08
US61/596,540 2012-02-08
US201261601090P 2012-02-21 2012-02-21
US61/601,090 2012-02-21
PCT/US2013/025087 WO2013119770A1 (en) 2012-02-08 2013-02-07 Data analysis of dna sequences

Publications (2)

Publication Number Publication Date
CN104272311A CN104272311A (zh) 2015-01-07
CN104272311B true CN104272311B (zh) 2018-08-28

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Family Applications (1)

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CN201380008411.9A Expired - Fee Related CN104272311B (zh) 2012-02-08 2013-02-07 Dna序列的数据分析

Country Status (13)

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US (1) US20130211729A1 (enExample)
EP (1) EP2812831A4 (enExample)
JP (1) JP6314091B2 (enExample)
KR (1) KR20140119723A (enExample)
CN (1) CN104272311B (enExample)
AR (1) AR089934A1 (enExample)
AU (1) AU2013217079B2 (enExample)
BR (1) BR112014019047A2 (enExample)
CA (1) CA2863524A1 (enExample)
IL (1) IL233819A0 (enExample)
IN (1) IN2014DN05963A (enExample)
TW (1) TWI596493B (enExample)
WO (1) WO2013119770A1 (enExample)

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UY35812A (es) 2013-11-04 2015-05-29 Dow Agrosciences Llc ?loci de maíz óptimos?.
EP3862434A1 (en) 2013-11-04 2021-08-11 Dow AgroSciences LLC Optimal soybean loci
MX362066B (es) 2013-11-04 2019-01-07 Dow Agrosciences Llc Loci óptimos de soya.
CN103824001A (zh) * 2014-02-27 2014-05-28 北京诺禾致源生物信息科技有限公司 染色体的检测方法和装置
US9600599B2 (en) * 2014-05-13 2017-03-21 Spiral Genetics, Inc. Prefix burrows-wheeler transformation with fast operations on compressed data
TWI571763B (zh) * 2014-12-01 2017-02-21 財團法人資訊工業策進會 次世代定序分析系統及其次世代定序分析方法
US10429342B2 (en) 2014-12-18 2019-10-01 Edico Genome Corporation Chemically-sensitive field effect transistor
US9859394B2 (en) 2014-12-18 2018-01-02 Agilome, Inc. Graphene FET devices, systems, and methods of using the same for sequencing nucleic acids
US10006910B2 (en) 2014-12-18 2018-06-26 Agilome, Inc. Chemically-sensitive field effect transistors, systems, and methods for manufacturing and using the same
US10020300B2 (en) 2014-12-18 2018-07-10 Agilome, Inc. Graphene FET devices, systems, and methods of using the same for sequencing nucleic acids
US9618474B2 (en) 2014-12-18 2017-04-11 Edico Genome, Inc. Graphene FET devices, systems, and methods of using the same for sequencing nucleic acids
US9857328B2 (en) 2014-12-18 2018-01-02 Agilome, Inc. Chemically-sensitive field effect transistors, systems and methods for manufacturing and using the same
SG11201707653TA (en) * 2015-06-24 2017-10-30 Samsung Life Public Welfare Foundation Method and device for analyzing genes
US10633703B2 (en) 2015-11-10 2020-04-28 Dow Agrosciences Llc Methods and systems for predicting the risk of transgene silencing
TWI582631B (zh) * 2015-11-20 2017-05-11 財團法人資訊工業策進會 用以分析細菌菌種之定序資料的系統及其方法
WO2017101112A1 (zh) * 2015-12-18 2017-06-22 云舟生物科技（广州）有限公司 载体设计方法及载体设计装置
WO2017201081A1 (en) 2016-05-16 2017-11-23 Agilome, Inc. Graphene fet devices, systems, and methods of using the same for sequencing nucleic acids
TWI629607B (zh) * 2017-08-15 2018-07-11 極諾生技股份有限公司 建立腸道菌數據庫的方法和相關檢測系統
US10649982B2 (en) 2017-11-09 2020-05-12 Fry Laboratories, LLC Automated database updating and curation
US20230030373A1 (en) * 2019-12-23 2023-02-02 Cold Spring Harbor Laboratory Mixseq: mixture sequencing using compressed sensing for in-situ and in-vitro applications
KR102322308B1 (ko) 2020-03-27 2021-11-05 주식회사 클리노믹스 일부 오믹스 정보를 활용하여 전체 오믹스 정보로 확대 생산하는 장치 및 방법
CN111613272B (zh) * 2020-05-21 2023-10-13 西湖大学 程序化框架gRNA及其应用
CN113724783B (zh) * 2021-06-16 2022-04-12 北京阅微基因技术股份有限公司 一种短串联重复序列重复数的检测和分型方法
US12112792B2 (en) * 2021-08-10 2024-10-08 Micron Technology, Inc. Memory device for wafer-on-wafer formed memory and logic
CN116343923B (zh) * 2023-03-21 2023-12-08 哈尔滨工业大学 一种基因组结构变异同源性识别方法

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US20040241657A1 (en) * 2003-05-28 2004-12-02 Perlegen Sciences, Inc. Liver related disease compositions and methods
CN101014719A (zh) * 2004-03-25 2007-08-08 基尼宗生物科学公司 核酸测序的方法和手段
US20100240133A1 (en) * 2009-03-20 2010-09-23 The Rockefeller University Compositions and Methods for Transposon Mutagenesis of Human Embryonic Stem Cells
US20110030086A1 (en) * 2004-09-29 2011-02-03 Pioneer Hi-Bred International, Inc. Corn event das-59122-7 and methods for detection thereof

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US20030204317A1 (en) * 2002-04-26 2003-10-30 Affymetrix, Inc. Methods, systems and software for displaying genomic sequence and annotations
JP2004139254A (ja) * 2002-10-16 2004-05-13 Nec Soft Ltd 近傍遺伝子情報検索装置及び方法
JP2006252541A (ja) * 2005-02-10 2006-09-21 Institute Of Physical & Chemical Research アノテーション方法、アノテーションシステム、プログラムおよびコンピューター読み取り可能な記録媒体
WO2010109463A2 (en) * 2009-03-24 2010-09-30 Yeda Research And Development Co. Ltd. Methods of predicting pairability and secondary structures of rna molecules

Patent Citations (4)

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Publication number Priority date Publication date Assignee Title
US20040241657A1 (en) * 2003-05-28 2004-12-02 Perlegen Sciences, Inc. Liver related disease compositions and methods
CN101014719A (zh) * 2004-03-25 2007-08-08 基尼宗生物科学公司 核酸测序的方法和手段
US20110030086A1 (en) * 2004-09-29 2011-02-03 Pioneer Hi-Bred International, Inc. Corn event das-59122-7 and methods for detection thereof
US20100240133A1 (en) * 2009-03-20 2010-09-23 The Rockefeller University Compositions and Methods for Transposon Mutagenesis of Human Embryonic Stem Cells

Also Published As

Publication number Publication date
AR089934A1 (es) 2014-10-01
WO2013119770A1 (en) 2013-08-15
BR112014019047A2 (pt) 2017-06-27
IL233819A0 (en) 2014-09-30
EP2812831A4 (en) 2015-11-18
CN104272311A (zh) 2015-01-07
US20130211729A1 (en) 2013-08-15
IN2014DN05963A (enExample) 2015-06-26
AU2013217079B2 (en) 2018-04-19
AU2013217079A1 (en) 2014-08-07
TW201337618A (zh) 2013-09-16
JP6314091B2 (ja) 2018-04-18
KR20140119723A (ko) 2014-10-10
EP2812831A1 (en) 2014-12-17
HK1201951A1 (en) 2015-09-11
CA2863524A1 (en) 2013-08-15
TWI596493B (zh) 2017-08-21
JP2015509623A (ja) 2015-03-30

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