IN2014DN05963A - - Google Patents

Info

Publication number
IN2014DN05963A
IN2014DN05963A IN5963DEN2014A IN2014DN05963A IN 2014DN05963 A IN2014DN05963 A IN 2014DN05963A IN 5963DEN2014 A IN5963DEN2014 A IN 5963DEN2014A IN 2014DN05963 A IN2014DN05963 A IN 2014DN05963A
Authority
IN
India
Prior art keywords
genome
insertion sites
sequence
data
analysis
Prior art date
Application number
Inventor
Dent Lakshmi Sastry
Shreedharan Sriram
Navin Elango
Zehui Cao
Karthik Narayan Muthuranman
Original Assignee
Dow Agrosciences Llc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Dow Agrosciences Llc filed Critical Dow Agrosciences Llc
Publication of IN2014DN05963A publication Critical patent/IN2014DN05963A/en

Links

Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/10—Ontologies; Annotations

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Theoretical Computer Science (AREA)
  • Evolutionary Biology (AREA)
  • Biophysics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biotechnology (AREA)
  • Medical Informatics (AREA)
  • General Health & Medical Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Analytical Chemistry (AREA)
  • Chemical & Material Sciences (AREA)
  • Bioethics (AREA)
  • Databases & Information Systems (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Management, Administration, Business Operations System, And Electronic Commerce (AREA)

Abstract

Systems and methods for data analysis are provided. In one embodiment a method for analysis is provided including electronically receiving sequence data; electronically receiving one or more reference data sequences related to at least an expression vector; associating the sequence data with at least one of the reference data sequences to identify a transgene flanking sequence; searching a genome for one or more insertion sites of the transgene flanking sequence; and annotating the genome and the one or more insertion sites within the genome when one or more insertion sites are found in said searching step.
IN5963DEN2014 2012-02-08 2013-02-07 IN2014DN05963A (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US201261596540P 2012-02-08 2012-02-08
US201261601090P 2012-02-21 2012-02-21
PCT/US2013/025087 WO2013119770A1 (en) 2012-02-08 2013-02-07 Data analysis of dna sequences

Publications (1)

Publication Number Publication Date
IN2014DN05963A true IN2014DN05963A (en) 2015-06-26

Family

ID=48946332

Family Applications (1)

Application Number Title Priority Date Filing Date
IN5963DEN2014 IN2014DN05963A (en) 2012-02-08 2013-02-07

Country Status (14)

Country Link
US (1) US20130211729A1 (en)
EP (1) EP2812831A4 (en)
JP (1) JP6314091B2 (en)
KR (1) KR20140119723A (en)
CN (1) CN104272311B (en)
AR (1) AR089934A1 (en)
AU (1) AU2013217079B2 (en)
BR (1) BR112014019047A2 (en)
CA (1) CA2863524A1 (en)
HK (1) HK1201951A1 (en)
IL (1) IL233819A0 (en)
IN (1) IN2014DN05963A (en)
TW (1) TWI596493B (en)
WO (1) WO2013119770A1 (en)

Families Citing this family (26)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
BR102014027436B1 (en) 2013-11-04 2022-06-28 Dow Agrosciences Llc RECOMBINANT NUCLEIC ACID MOLECULE AND METHOD FOR PRODUCTION OF A TRANSGENIC PLANT CELL
MX364662B (en) 2013-11-04 2019-05-03 Dow Agrosciences Llc Optimal maize loci.
CA3226233A1 (en) * 2013-11-04 2015-05-07 Corteva Agriscience Llc Optimal soybean loci for targeted transgene integration
WO2015066636A2 (en) 2013-11-04 2015-05-07 Dow Agrosciences Llc Optimal maize loci
CN103824001A (en) * 2014-02-27 2014-05-28 北京诺禾致源生物信息科技有限公司 Method and device for detecting chromosome
US9600599B2 (en) * 2014-05-13 2017-03-21 Spiral Genetics, Inc. Prefix burrows-wheeler transformation with fast operations on compressed data
TWI571763B (en) * 2014-12-01 2017-02-21 財團法人資訊工業策進會 Next generation sequencing analysis system and next generation sequencing analysis method thereof
US9857328B2 (en) 2014-12-18 2018-01-02 Agilome, Inc. Chemically-sensitive field effect transistors, systems and methods for manufacturing and using the same
US9618474B2 (en) 2014-12-18 2017-04-11 Edico Genome, Inc. Graphene FET devices, systems, and methods of using the same for sequencing nucleic acids
CA2971589C (en) 2014-12-18 2021-09-28 Edico Genome Corporation Chemically-sensitive field effect transistor
US10006910B2 (en) 2014-12-18 2018-06-26 Agilome, Inc. Chemically-sensitive field effect transistors, systems, and methods for manufacturing and using the same
US10020300B2 (en) 2014-12-18 2018-07-10 Agilome, Inc. Graphene FET devices, systems, and methods of using the same for sequencing nucleic acids
US9859394B2 (en) 2014-12-18 2018-01-02 Agilome, Inc. Graphene FET devices, systems, and methods of using the same for sequencing nucleic acids
CN107408162B (en) * 2015-06-24 2020-12-01 吉尼努斯公司 Method and apparatus for analyzing gene
EP3374907B1 (en) * 2015-11-10 2022-10-19 Corteva Agriscience LLC Methods and systems for predicting the risk of transgene silencing
TWI582631B (en) * 2015-11-20 2017-05-11 財團法人資訊工業策進會 Dna sequence analyzing system for analyzing bacterial species and method thereof
WO2017101112A1 (en) * 2015-12-18 2017-06-22 云舟生物科技（广州）有限公司 Vector design method and vector design apparatus
US10811539B2 (en) 2016-05-16 2020-10-20 Nanomedical Diagnostics, Inc. Graphene FET devices, systems, and methods of using the same for sequencing nucleic acids
TWI629607B (en) * 2017-08-15 2018-07-11 極諾生技股份有限公司 A method of building gut microbiota database and the related detection system
US10649982B2 (en) * 2017-11-09 2020-05-12 Fry Laboratories, LLC Automated database updating and curation
WO2021133911A1 (en) * 2019-12-23 2021-07-01 Cold Spring Harbor Laboratory Mixseq: mixture sequencing using compressed sensing for in-situ and in-vitro applications
KR102322308B1 (en) 2020-03-27 2021-11-05 주식회사 클리노믹스 Apparatus and method for expanding the amount of omics sequencing data from partial omics sequencing data
CN111613272B (en) * 2020-05-21 2023-10-13 西湖大学 Programmable framework gRNA and application thereof
CN113362892B (en) * 2021-06-16 2021-12-17 北京阅微基因技术股份有限公司 Method for detecting and typing repetition number of short tandem repeat sequence
US20230051863A1 (en) * 2021-08-10 2023-02-16 Micron Technology, Inc. Memory device for wafer-on-wafer formed memory and logic
CN116343923B (en) * 2023-03-21 2023-12-08 哈尔滨工业大学 Genome structural variation homology identification method

Family Cites Families (8)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20030204317A1 (en) * 2002-04-26 2003-10-30 Affymetrix, Inc. Methods, systems and software for displaying genomic sequence and annotations
JP2004139254A (en) * 2002-10-16 2004-05-13 Nec Soft Ltd Neighborhood gene information retrieval device and method
US20040241657A1 (en) * 2003-05-28 2004-12-02 Perlegen Sciences, Inc. Liver related disease compositions and methods
GB2413796B (en) * 2004-03-25 2006-03-29 Global Genomics Ab Methods and means for nucleic acid sequencing
UA97088C2 (en) * 2004-09-29 2012-01-10 Пионер Хай-Бред Интернешнл, Инк. Transgenic insect resistant maize das-59122-7 and methods for detection thereof
JP2006252541A (en) * 2005-02-10 2006-09-21 Institute Of Physical & Chemical Research Annotation method, annotation system, program, and computer readable recording medium
US8592211B2 (en) * 2009-03-20 2013-11-26 The Rockefeller University Enhanced PiggyBac transposon and methods for transposon mutagenesis
EP2411537A2 (en) * 2009-03-24 2012-02-01 Yeda Research and Development Co. Ltd. Methods of predicting pairability and secondary structures of rna molecules

Also Published As

Publication number Publication date
TWI596493B (en) 2017-08-21
WO2013119770A1 (en) 2013-08-15
TW201337618A (en) 2013-09-16
CN104272311B (en) 2018-08-28
BR112014019047A2 (en) 2017-06-27
US20130211729A1 (en) 2013-08-15
IL233819A0 (en) 2014-09-30
AU2013217079A1 (en) 2014-08-07
JP2015509623A (en) 2015-03-30
AR089934A1 (en) 2014-10-01
KR20140119723A (en) 2014-10-10
EP2812831A4 (en) 2015-11-18
JP6314091B2 (en) 2018-04-18
EP2812831A1 (en) 2014-12-17
CA2863524A1 (en) 2013-08-15
CN104272311A (en) 2015-01-07
AU2013217079B2 (en) 2018-04-19
HK1201951A1 (en) 2015-09-11

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